MD14G1039900.v1.1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
3748368 .. 3749579
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1039900.v1.1.491

Sequence Viewer

Length: 1212 bp
ATGGATGGCATAGAAGTTCCTCAGTATTTCATCTGCCCAATATCTCTTCAGATCATGAAGGACCCTGTGACAGCCATTACAGGCATCACGTACGACAGGGAGAGCATCGAGCACTGGCTATTCCAGAGCAAGAACATCACATGTCCCGTCACCAAACAGCCACTCCAGAAGGACTCCGAACTAACGCCTAACCACACATTGCACCGCTTAATTCAGGCATGGTGCACTAAGAATGCCTCCTACGGCATTGATCAAATACCAACTCCGAAAACACCTCTCAACAAAGCTCAAGTCCTCAAGCTCCTCAAGGACTTCTGGCACCCTCAGCTCCAGCTGAAGATTATCAGAAAGTTGGAGCTCCTGGCGGTGGAAAACGAAGGGAATAGGAAGTACATGGTGGAAGCCGGCGTGGCTAATGCCATGTTGTTATTCATTACAAACAGATGTTACAAGAACGACCAGGTGGATGGCCTAGAAGAAGCCCTTAGCATACTTCACTTTGTTCGGATTTCGTCCGAAGAATTAAACCGTCACTTTATGGAAAACTATCATATCATCGATTCGTTGACATGGGTTTTTGGTTGCGAAATGGAGAATCAAATCACGGTGAGTACGTATGCGGTGTTGGTCCTAAAATATATCATCCAAAAGGCAAACTCACGCGTGCTAGAAACCCTAAACCCTGATTTTTTTAAGAAACTTGTTGGGGTTTTGAGAAATGGGGTCACAGAACAAGGGATGAATGCAGCTCTACATGTCATGTTAGACGCTTGTCCTTGGGGAAGAAATCGAATCAAGATGGTCGAAGCTGGGGCTGTTCACGAGCTCATCGAGCTTGAATTTGGTGCACCGGAAAAGAGAACAACGGAGCTCATTTTTGGTATATTATTTCATTTGTGTTCTTGTGCTGATGGGAGAGCTCAGTTTATTAGTCATAAAGGAGGCATCTCCGTTGTGTCAAGGAGACTTCTTAGGGTTTCTCCAGCAGCTGATGACCGAGCAGTTTTGATCCTTTCTATGATATGCAAGTACTCAGGAACCAACTTGGTGCTTCAGGAGATGTTGGAGTTTGGAGCTGTTGCTAGGCTTTGCACTTTGATCCAAGTTGACTGTCCTCCATACTTGAAAGGCAAAGCAAGGGAAATCCTTAGATCACATTATGAGGAGTGGAAGAACTGTCGTTGTCATGATATTTCTCTGTATCCCAAGTGA

Protein Analysis

404

Amino Acids

45.96

Weight (kDa)

7.91

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 6 - 78 4.3e-19 U-box domain
ARM_PUB PF25598 111 - 398 1.1e-62 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AccII CGCG 1 cut(s) 663
AciI CCGC 3 cut(s) 205, 365, 620
AclWI GGATC 2 cut(s) 1003, 1093
AcsI RAATTY 1 cut(s) 839
AcuI CTGAAG 3 cut(s) 32, 356, 1037
AfaI GTAC 4 cut(s) 92, 392, 613, 1031
AfiI CCNNNNNNNGG 1 cut(s) 367
AflIII ACRYGT 3 cut(s) 140, 661, 754
AgsI TTSAA 2 cut(s) 839, 1126
AjnI CCWGG 2 cut(s) 360, 459
Alw21I GWGCWC 7 cut(s) 114, 227, 360, 828, 850, 873, 922
Alw26I GTCTC 1 cut(s) 958
Alw44I GTGCAC 2 cut(s) 223, 846
AlwI GGATC 2 cut(s) 1003, 1093
AlwNI CAGNNNCTG 1 cut(s) 989
AoxI GGCC 1 cut(s) 469
ApaLI GTGCAC 2 cut(s) 223, 846
ApeKI GCWGC 2 cut(s) 746, 986
ApoI RAATTY 1 cut(s) 839
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
AspS9I GGNCC 2 cut(s) 61, 628
AsuHPI GGTGA 2 cut(s) 142, 619
AvaII GGWCC 2 cut(s) 61, 628
BaeGI GKGCMC 2 cut(s) 227, 850
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 4 cut(s) 360, 828, 873, 922
BauI CACGAG 1 cut(s) 821
Bbv12I GWGCWC 7 cut(s) 114, 227, 360, 828, 850, 873, 922
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 758, 998
BccI CCATC 3 cut(s) 461, 793, 905
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 362, 461
BciVI GTATCC 1 cut(s) 1212
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 958
BfaI CTAG 3 cut(s) 473, 668, 1083
BfuI GTATCC 1 cut(s) 1212
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 2 cut(s) 747, 987
BlsI GCNGC 2 cut(s) 748, 988
BmcAI AGTACT 1 cut(s) 1031
Bme1390I CCNGG 2 cut(s) 362, 461
Bme18I GGWCC 2 cut(s) 61, 628
BmgT120I GGNCC 2 cut(s) 61, 628
BmiI GGNNCC 3 cut(s) 63, 320, 1039
BmrFI CCNGG 2 cut(s) 362, 461
BmsI GCATC 3 cut(s) 93, 114, 954
BoxI GACNNNNGTC 1 cut(s) 771
BpmI CTGGAG 3 cut(s) 149, 314, 966
Bpu10I CCTNAGC 2 cut(s) 324, 485
BpuEI CTTGAG 3 cut(s) 273, 281, 290
Bsa29I ATCGAT 1 cut(s) 558
BsaAI YACGTR 2 cut(s) 90, 615
BsaJI CCNNGG 1 cut(s) 776
BsaWI WCCGGW 1 cut(s) 850
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 2 cut(s) 362, 461
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 776
BseGI GGATG 4 cut(s) 10, 472, 642, 744
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 4 cut(s) 35, 338, 935, 1047
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 2 cut(s) 293, 1178
BseSI GKGCMC 2 cut(s) 227, 850
BseXI GCAGC 2 cut(s) 758, 998
BseYI CCCAGC 1 cut(s) 809
Bsh1236I CGCG 1 cut(s) 663
BshFI GGCC 1 cut(s) 471
BshNI GGYRCC 1 cut(s) 318
BshVI ATCGAT 1 cut(s) 558
BsiHKAI GWGCWC 7 cut(s) 114, 227, 360, 828, 850, 873, 922
BsiSI CCGG 2 cut(s) 405, 851
BsiWI CGTACG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 958
BsmFI GGGAC 1 cut(s) 129
BsmI GAATGC 2 cut(s) 238, 748
BsnI GGCC 1 cut(s) 471
Bsp1286I GDGCHC 7 cut(s) 114, 227, 360, 828, 850, 873, 922
Bsp143I GATC 5 cut(s) 51, 250, 1008, 1098, 1151
BspACI CCGC 3 cut(s) 205, 365, 620
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 4 cut(s) 34, 337, 934, 1046
BspDI ATCGAT 1 cut(s) 558
BspFNI CGCG 1 cut(s) 663
BspHI TCATGA 2 cut(s) 54, 1186
BspLI GGNNCC 3 cut(s) 63, 320, 1039
BspPI GGATC 2 cut(s) 1003, 1093
BspT107I GGYRCC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 776
BssMI GATC 5 cut(s) 51, 250, 1008, 1098, 1151
BssSI CACGAG 1 cut(s) 821
BssT1I CCWWGG 1 cut(s) 776
Bst2BI CACGAG 1 cut(s) 821
Bst2UI CCWGG 2 cut(s) 362, 461
Bst4CI ACNGT 4 cut(s) 530, 607, 1112, 1178
Bst6I CTCTTC 1 cut(s) 51
BstBAI YACGTR 2 cut(s) 90, 615
BstC8I GCNNGC 2 cut(s) 406, 665
BstDEI CTNAG 8 cut(s) 21, 228, 324, 485, 921, 971, 1033, 1148
BstF5I GGATG 4 cut(s) 10, 472, 642, 744
BstFNI CGCG 1 cut(s) 663
BstKTI GATC 5 cut(s) 54, 253, 1011, 1101, 1154
BstMAI GTCTC 1 cut(s) 958
BstMBI GATC 5 cut(s) 51, 250, 1008, 1098, 1151
BstMWI GCNNNNNNNGC 3 cut(s) 325, 410, 832
BstNI CCWGG 2 cut(s) 362, 461
BstNSI RCATGY 2 cut(s) 144, 758
BstPAI GACNNNNGTC 1 cut(s) 771
BstSCI CCNGG 2 cut(s) 360, 459
BstSLI GKGCMC 2 cut(s) 227, 850
BstSNI TACGTA 1 cut(s) 615
BstUI CGCG 1 cut(s) 663
BstV1I GCAGC 2 cut(s) 758, 998
BstXI CCANNNNNNTGG 1 cut(s) 467
Bsu15I ATCGAT 1 cut(s) 558
BsuI GTATCC 1 cut(s) 1212
BsuRI GGCC 1 cut(s) 471
BsuTUI ATCGAT 1 cut(s) 558
BtsCI GGATG 4 cut(s) 10, 472, 642, 744
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 406, 665
CaiI CAGNNNCTG 1 cut(s) 989
CciI TCATGA 2 cut(s) 54, 1186
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 61, 628
ClaI ATCGAT 1 cut(s) 558
CseI GACGC 1 cut(s) 776
CsiI ACCWGGT 1 cut(s) 459
Csp6I GTAC 4 cut(s) 91, 391, 612, 1030
CviAII CATG 9 cut(s) 55, 141, 219, 394, 421, 570, 755, 760, 1187
CviQI GTAC 4 cut(s) 91, 391, 612, 1030
DdeI CTNAG 8 cut(s) 21, 228, 324, 485, 921, 971, 1033, 1148
DpnI GATC 5 cut(s) 53, 252, 1010, 1100, 1153
DpnII GATC 5 cut(s) 51, 250, 1008, 1098, 1151
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 4 cut(s) 358, 826, 871, 920
Eco105I TACGTA 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 776
Eco24I GRGCYC 4 cut(s) 360, 828, 873, 922
Eco47I GGWCC 2 cut(s) 61, 628
Eco53kI GAGCTC 4 cut(s) 358, 826, 871, 920
Eco57I CTGAAG 3 cut(s) 32, 356, 1037
EcoICRI GAGCTC 4 cut(s) 358, 826, 871, 920
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 360, 459
EcoT14I CCWWGG 1 cut(s) 776
EcoT38I GRGCYC 4 cut(s) 360, 828, 873, 922
ErhI CCWWGG 1 cut(s) 776
FaeI CATG 9 cut(s) 58, 144, 222, 397, 424, 573, 758, 763, 1190
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 1 cut(s) 129
FatI CATG 9 cut(s) 54, 140, 218, 393, 420, 569, 754, 759, 1186
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 747, 987
FokI GGATG 4 cut(s) 17, 479, 629, 751
FriOI GRGCYC 4 cut(s) 360, 828, 873, 922
Fsp4HI GCNGC 2 cut(s) 747, 987
FspBI CTAG 3 cut(s) 473, 668, 1083
GluI GCNGC 2 cut(s) 747, 987
GsaI CCCAGC 1 cut(s) 813
GsuI CTGGAG 3 cut(s) 149, 314, 966
HaeIII GGCC 1 cut(s) 471
HapII CCGG 2 cut(s) 405, 851
HgaI GACGC 1 cut(s) 776
Hin1II CATG 9 cut(s) 58, 144, 222, 397, 424, 573, 758, 763, 1190
HincII GTYRAC 2 cut(s) 567, 1108
HindII GTYRAC 2 cut(s) 567, 1108
HinfI GANTC 4 cut(s) 173, 560, 595, 792
HpaII CCGG 2 cut(s) 405, 851
HphI GGTGA 2 cut(s) 142, 619
Hpy166II GTNNAC 5 cut(s) 225, 567, 820, 848, 1108
Hpy188I TCNGA 6 cut(s) 51, 178, 267, 347, 507, 517
Hpy188III TCNNGA 8 cut(s) 55, 124, 166, 796, 821, 1035, 1055, 1187
Hpy8I GTNNAC 5 cut(s) 225, 567, 820, 848, 1108
HpyAV CCTTC 3 cut(s) 52, 163, 371
HpyCH4III ACNGT 4 cut(s) 530, 607, 1112, 1178
HpyCH4IV ACGT 2 cut(s) 89, 614
HpyCH4V TGCA 6 cut(s) 202, 225, 746, 848, 1026, 1092
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 410, 832
HpyF3I CTNAG 8 cut(s) 21, 228, 324, 485, 921, 971, 1033, 1148
HpySE526I ACGT 2 cut(s) 89, 614
Hsp92II CATG 9 cut(s) 58, 144, 222, 397, 424, 573, 758, 763, 1190
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 5 cut(s) 51, 250, 1008, 1098, 1151
LmnI GCTCC 6 cut(s) 306, 333, 355, 363, 868, 1073
Lsp1109I GCAGC 2 cut(s) 758, 998
LweI GCATC 3 cut(s) 93, 114, 954
MabI ACCWGGT 1 cut(s) 459
MaeI CTAG 3 cut(s) 473, 668, 1083
MaeII ACGT 2 cut(s) 89, 614
MaeIII GTNAC 5 cut(s) 67, 148, 446, 530, 724
MalI GATC 5 cut(s) 53, 252, 1010, 1100, 1153
MboI GATC 5 cut(s) 51, 250, 1008, 1098, 1151
MboII GAAGA 6 cut(s) 38, 349, 488, 530, 795, 1183
MhlI GDGCHC 7 cut(s) 114, 227, 360, 828, 850, 873, 922
MluCI AATT 3 cut(s) 210, 521, 839
MluI ACGCGT 1 cut(s) 661
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 2 cut(s) 333, 1044
MnlI CCTC 9 cut(s) 30, 247, 285, 305, 314, 333, 935, 1125, 1156
MroNI GCCGGC 1 cut(s) 404
MseI TTAA 3 cut(s) 209, 524, 693
MspA1I CMGCKG 2 cut(s) 334, 989
MspI CCGG 2 cut(s) 405, 851
MspR9I CCNGG 2 cut(s) 362, 461
Mva1269I GAATGC 2 cut(s) 238, 748
MvaI CCWGG 2 cut(s) 362, 461
MvnI CGCG 1 cut(s) 663
MwoI GCNNNNNNNGC 3 cut(s) 325, 410, 832
NaeI GCCGGC 1 cut(s) 406
NdeII GATC 5 cut(s) 51, 250, 1008, 1098, 1151
NgoMIV GCCGGC 1 cut(s) 404
NlaIII CATG 9 cut(s) 58, 144, 222, 397, 424, 573, 758, 763, 1190
NlaIV GGNNCC 3 cut(s) 63, 320, 1039
NmuCI GTSAC 4 cut(s) 67, 148, 530, 724
NspI RCATGY 2 cut(s) 144, 758
PagI TCATGA 2 cut(s) 54, 1186
PciI ACATGT 2 cut(s) 140, 754
PcsI WCGNNNNNNNCGW 2 cut(s) 611, 828
PctI GAATGC 2 cut(s) 238, 748
PdiI GCCGGC 1 cut(s) 406
PfeI GAWTC 3 cut(s) 560, 595, 792
Pfl23II CGTACG 1 cut(s) 90
PkrI GCNGC 2 cut(s) 748, 988
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Ppu21I YACGTR 2 cut(s) 90, 615
PpuMI RGGWCCY 1 cut(s) 61
PscI ACATGT 2 cut(s) 140, 754
PshAI GACNNNNGTC 1 cut(s) 771
Psp124BI GAGCTC 4 cut(s) 360, 828, 873, 922
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 360, 459
PspFI CCCAGC 1 cut(s) 809
PspGI CCWGG 2 cut(s) 360, 459
PspLI CGTACG 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 63, 320, 1039
PspPI GGNCC 2 cut(s) 61, 628
PspPPI RGGWCCY 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 989
PvuII CAGCTG 2 cut(s) 334, 989
RsaI GTAC 4 cut(s) 92, 392, 613, 1031
RsaNI GTAC 4 cut(s) 91, 391, 612, 1030
SacI GAGCTC 4 cut(s) 360, 828, 873, 922
SaqAI TTAA 3 cut(s) 209, 524, 693
SatI GCNGC 2 cut(s) 747, 987
Sau3AI GATC 5 cut(s) 51, 250, 1008, 1098, 1151
Sau96I GGNCC 2 cut(s) 61, 628
ScaI AGTACT 1 cut(s) 1031
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 362, 461
SduI GDGCHC 7 cut(s) 114, 227, 360, 828, 850, 873, 922
SexAI ACCWGGT 1 cut(s) 459
SfaNI GCATC 3 cut(s) 93, 114, 954
SinI GGWCC 2 cut(s) 61, 628
SmlI CTYRAG 3 cut(s) 288, 296, 305
SmoI CTYRAG 3 cut(s) 288, 296, 305
SnaBI TACGTA 1 cut(s) 615
Sse9I AATT 3 cut(s) 210, 521, 839
SsiI CCGC 3 cut(s) 205, 365, 620
SspMI CTAG 3 cut(s) 473, 668, 1083
SstI GAGCTC 4 cut(s) 360, 828, 873, 922
StyD4I CCNGG 2 cut(s) 360, 459
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 4 cut(s) 530, 607, 1112, 1178
TaiI ACGT 2 cut(s) 92, 617
TaqI TCGA 5 cut(s) 108, 558, 790, 804, 831
TaqII GACCGA 1 cut(s) 1011
TasI AATT 3 cut(s) 210, 521, 839
TatI WGTACW 2 cut(s) 390, 1029
TfiI GAWTC 3 cut(s) 560, 595, 792
Tru1I TTAA 3 cut(s) 209, 524, 693
Tru9I TTAA 3 cut(s) 209, 524, 693
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 4 cut(s) 67, 148, 530, 724
TseI GCWGC 2 cut(s) 746, 986
Tsp45I GTSAC 4 cut(s) 67, 148, 530, 724
TspDTI ATGAA 5 cut(s) 19, 71, 421, 755, 881
TspGWI ACGGA 2 cut(s) 881, 940
TspRI CASTG 1 cut(s) 119
VneI GTGCAC 2 cut(s) 223, 846
VpaK11BI GGWCC 2 cut(s) 61, 628
XapI RAATTY 1 cut(s) 839
XceI RCATGY 2 cut(s) 144, 758
XspI CTAG 3 cut(s) 473, 668, 1083
ZrmI AGTACT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.