Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004027

Physical Location & Seq

Genomic Coordinates Reverse (-)

12672449 .. 12673660

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G094100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGATGATATTGAAGTTCCTCAGTATTTCGTCTGCCCAATATCTCTCCAGATCATGCAAGACCCTGTGACGGCCATTACCGGCATCACATATGACAGGGACAGCATCGAGCACTGGCTTTTCCAGAGCAAGAACACCACATGCCCCGTCACCAAACAGCCTCTCCCAAGAGACTCAGAATTAACCCCTAACCACACCTTACGCCGCTTAATTCAGGCTTGGTGCACTGAAAATGCGTCTTATGGCATTGATCGAATACCAACCCCGAAACCACCTCTGGATAAGGCTCAAGTCCTTAAGCTCCTCAAGGACTTCTGGAACCCTAAGCTCCAACTGAAAATCATTCGAAAAATCGAGTTCCTCGCGACCAAAAGCGAAGGGAATAGGAAGTACTTGGTTGACGCTGGCGTGGCTAAGGCCATGTTGTTGTTCATCGCAAACAGGTGTTATAAGGAGGGTCTGGTTGATGGCCTTGAAGAAGCCCTTAGCATACTTCACTTTGTTCGGATTTCATCCGAAGAACTAAGTCTTCTTTTCATGGAAAACGATCAGATTATCGATTCGTTGACGTGGGTTTTTGGTTGCAAATTGCAGAATCAAATCTCGGTGAGCACACATGCAGTCTTGGTACTAAAATCGATCATCCAGAAGGCAACCTCAAGTGTGCTAGAAACTCTGAACCCTGATTTCTTCAAGAAACTTGTTGGGGTTTTGAGAAACGGGGTTACGCAACAAGGGACAAACGCAGCTCTACATATCATGTTAGACGCTTGTCCATGGGGAAGAAACCGAATCAAGATGGTCGATGCCGGGGCGGTTTACCAGCTCATTGAGCTTGAGTTTGAAGCACCTGAAAAGAAAATCACAGAGCTCATTTTCGGAATATTGTTTCACTTGTGTTCTTGTGCTGATGGGAGGGCTCAGTTTGTGAGCCACAAAGGAGGCATCTTTGTTGTGTCGAATAGACTCTTGAAGGTTTCGCCGTCTGCAGACGACCGAGTAGTTTTGATCCTTTCTTTGATCTGCAAGTACTCAGGAACCAACATGGTGCTTCAGGAAATGTTGGAGGTTGGAGCTGTGTATAGGCTTTGCACTTTGCTCCAAGTTGACTGCGCTCCATACTTGAAAGACAAAGCAAGGCAAATCCTGAGATCACATTATGAGGAGTGGAAGAAGTGTCCCTGTCTTGGTATTTCTCTCCATCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

404

Amino Acids

45.55

Weight (kDa)

8.33

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11840
fragaria_vesca	FvH4_3g26390 FvH4_6g20390
malus_domestica	MD11G1173500.v1.1 MD12G1040800.v1.1 MD14G1039900.v1.1
prunus_persica	Prupe.6G145200_v2.0.a1 Prupe.6G145200_v2.0.a1 Prupe.7G094100_v2.0.a1
pyrus_communis	pycom11g14800 pycom12g03490 pycom14g03410
rosa_chinensis	RchiOBHm_Chr3g0476021 RchiOBHm_Chr5g0048571
rosa_laevigata	RLG00000023791 RLG00000034535
rosa_multiflora	Rmu_sc0000585.1_g000008 Rmu_sc0007341.1_g000034
rosa_roxburghii	Rroxscaffold_1G00033260 Rroxscaffold_6G00405500
rosa_rugosa	Rorug03G0152800 Rorug05G0239500
rosa_samantha	Rh3AG203700 Rh3BG233600 Rh3CG229000 Rh3DG229100 Rh5AG319200 Rh5BG329600 Rh5CG355500 Rh5DG340800
rosa_wichuraiana	Rw0G021240 Rw3G018510 Rw5G029850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccII	CGCG	1 cut(s)	365
AciI	CCGC	2 cut(s)	205, 815
AclWI	GGATC	1 cut(s)	1003
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	1037
AfaI	GTAC	3 cut(s)	392, 630, 1031
AfiI	CCNNNNNNNGG	2 cut(s)	70, 1187
AflII	CTTAAG	1 cut(s)	296
AgsI	TTSAA	6 cut(s)	14, 476, 694, 845, 973, 1126
AjiI	CACGTC	1 cut(s)	570
AluBI	AGCT	7 cut(s)	301, 328, 749, 826, 835, 871, 1076
AluI	AGCT	7 cut(s)	301, 328, 749, 826, 835, 871, 1076
Alw21I	GWGCWC	4 cut(s)	114, 227, 614, 873
Alw26I	GTCTC	1 cut(s)	165
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	1003
AoxI	GGCC	3 cut(s)	72, 417, 469
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	1115
AsuC2I	CCSGG	1 cut(s)	811
AsuHPI	GGTGA	2 cut(s)	142, 619
AsuII	TTCGAA	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	873, 922
BbsI	GAAGAC	1 cut(s)	521
Bbv12I	GWGCWC	4 cut(s)	114, 227, 614, 873
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	4 cut(s)	461, 793, 905, 1209
BceAI	ACGGC	2 cut(s)	87, 967
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	668
BfmI	CTRYAG	1 cut(s)	987
BfrI	CTTAAG	1 cut(s)	296
BisI	GCNGC	2 cut(s)	205, 747
BlsI	GCNGC	2 cut(s)	206, 748
BmcAI	AGTACT	2 cut(s)	392, 1031
Bme1390I	CCNGG	1 cut(s)	811
BmgBI	CACGTC	1 cut(s)	570
BmiI	GGNNCC	2 cut(s)	320, 1039
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	4 cut(s)	93, 114, 796, 954
BoxI	GACNNNNGTC	1 cut(s)	771
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	32
Bpu10I	CCTNAGC	3 cut(s)	324, 414, 485
Bpu14I	TTCGAA	1 cut(s)	346
BpuEI	CTTGAG	4 cut(s)	273, 290, 643, 857
BpuMI	CCSGG	1 cut(s)	811
Bsa29I	ATCGAT	2 cut(s)	558, 638
BsaJI	CCNNGG	2 cut(s)	776, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 1187
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	119
BseCI	ATCGAT	2 cut(s)	558, 638
BseDI	CCNNGG	2 cut(s)	776, 810
BseGI	GGATG	4 cut(s)	10, 512, 642, 1201
BseLI	CCNNNNNNNGG	2 cut(s)	70, 1187
BseMII	CTCAG	5 cut(s)	35, 189, 935, 1047, 1139
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	2 cut(s)	293, 1178
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	758
Bsh1236I	CGCG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	997
BshFI	GGCC	3 cut(s)	74, 419, 471
BshVI	ATCGAT	2 cut(s)	558, 638
BsiEI	CGRYCG	1 cut(s)	997
BsiHKAI	GWGCWC	4 cut(s)	114, 227, 614, 873
BsiSI	CCGG	2 cut(s)	81, 810
BslFI	GGGAC	3 cut(s)	113, 751, 1164
BslI	CCNNNNNNNGG	2 cut(s)	70, 1187
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	3 cut(s)	113, 751, 1164
BsnI	GGCC	3 cut(s)	74, 419, 471
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	5 cut(s)	114, 227, 614, 873, 922
Bsp143I	GATC	7 cut(s)	51, 250, 547, 639, 1008, 1020, 1151
Bsp19I	CCATGG	1 cut(s)	776
Bsp68I	TCGCGA	1 cut(s)	365
BspACI	CCGC	2 cut(s)	205, 815
BspANI	GGCC	3 cut(s)	74, 419, 471
BspCNI	CTCAG	5 cut(s)	34, 188, 934, 1046, 1140
BspDI	ATCGAT	2 cut(s)	558, 638
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	2 cut(s)	320, 1039
BspMAI	CTGCAG	1 cut(s)	991
BspPI	GGATC	1 cut(s)	1003
BspT104I	TTCGAA	1 cut(s)	346
BspTI	CTTAAG	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	776, 810
BssMI	GATC	7 cut(s)	51, 250, 547, 639, 1008, 1020, 1151
BssT1I	CCWWGG	1 cut(s)	776
BstAFI	CTTAAG	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	9 cut(s)	21, 175, 324, 414, 485, 524, 921, 1033, 1148
BstDSI	CCRYGG	1 cut(s)	776
BstF5I	GGATG	4 cut(s)	10, 512, 642, 1201
BstFNI	CGCG	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	1115
BstKTI	GATC	7 cut(s)	54, 253, 550, 642, 1011, 1023, 1154
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	7 cut(s)	51, 250, 547, 639, 1008, 1020, 1151
BstMCI	CGRYCG	1 cut(s)	997
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 832
BstNSI	RCATGY	2 cut(s)	144, 620
BstPAI	GACNNNNGTC	1 cut(s)	771
BstSCI	CCNGG	1 cut(s)	809
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	1 cut(s)	521
Bsu15I	ATCGAT	2 cut(s)	558, 638
BsuRI	GGCC	3 cut(s)	74, 419, 471
BsuTUI	ATCGAT	2 cut(s)	558, 638
BtgI	CCRYGG	1 cut(s)	776
BtgZI	GCGATG	1 cut(s)	418
BtrI	CACGTC	1 cut(s)	570
BtsCI	GGATG	4 cut(s)	10, 512, 642, 1201
BtsIMutI	CAGTG	2 cut(s)	112, 225
BtuMI	TCGCGA	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	406
CfoI	GCGC	1 cut(s)	1115
Cfr10I	RCCGGY	1 cut(s)	80
ClaI	ATCGAT	2 cut(s)	558, 638
CseI	GACGC	3 cut(s)	225, 410, 776
Csp6I	GTAC	3 cut(s)	391, 629, 1030
CviAII	CATG	8 cut(s)	55, 141, 421, 538, 617, 760, 777, 1045
CviQI	GTAC	3 cut(s)	391, 629, 1030
DdeI	CTNAG	9 cut(s)	21, 175, 324, 414, 485, 524, 921, 1033, 1148
DpnI	GATC	7 cut(s)	53, 252, 549, 641, 1010, 1022, 1153
DpnII	GATC	7 cut(s)	51, 250, 547, 639, 1008, 1020, 1151
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	1 cut(s)	776
Eco24I	GRGCYC	2 cut(s)	873, 922
Eco53kI	GAGCTC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	1037
EcoICRI	GAGCTC	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	776
EcoT38I	GRGCYC	2 cut(s)	873, 922
ErhI	CCWWGG	1 cut(s)	776
FaeI	CATG	8 cut(s)	58, 144, 424, 541, 620, 763, 780, 1048
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	3 cut(s)	113, 751, 1164
FatI	CATG	8 cut(s)	54, 140, 420, 537, 616, 759, 776, 1044
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	205, 747
FokI	GGATG	4 cut(s)	17, 499, 629, 1188
FriOI	GRGCYC	2 cut(s)	873, 922
Fsp4HI	GCNGC	2 cut(s)	205, 747
FspBI	CTAG	1 cut(s)	668
GlaI	GCGC	1 cut(s)	1114
GluI	GCNGC	2 cut(s)	205, 747
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	74, 419, 471
HapII	CCGG	2 cut(s)	81, 810
HgaI	GACGC	3 cut(s)	225, 410, 776
HhaI	GCGC	1 cut(s)	1115
Hin1II	CATG	8 cut(s)	58, 144, 424, 541, 620, 763, 780, 1048
Hin6I	GCGC	1 cut(s)	1113
HinP1I	GCGC	1 cut(s)	1113
HincII	GTYRAC	3 cut(s)	400, 567, 1108
HindII	GTYRAC	3 cut(s)	400, 567, 1108
HinfI	GANTC	5 cut(s)	173, 560, 595, 792, 966
HpaII	CCGG	2 cut(s)	81, 810
HphI	GGTGA	2 cut(s)	142, 619
Hpy166II	GTNNAC	5 cut(s)	225, 400, 567, 820, 1108
Hpy188I	TCNGA	6 cut(s)	178, 507, 517, 552, 678, 881
Hpy8I	GTNNAC	5 cut(s)	225, 400, 567, 820, 1108
HpyAV	CCTTC	3 cut(s)	371, 643, 967
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	8 cut(s)	58, 225, 585, 592, 620, 989, 1026, 1092
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 832
HpyF3I	CTNAG	9 cut(s)	21, 175, 324, 414, 485, 524, 921, 1033, 1148
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	8 cut(s)	58, 144, 424, 541, 620, 763, 780, 1048
HspAI	GCGC	1 cut(s)	1113
Kzo9I	GATC	7 cut(s)	51, 250, 547, 639, 1008, 1020, 1151
LmnI	GCTCC	5 cut(s)	306, 333, 1073, 1104, 1120
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	4 cut(s)	93, 114, 796, 954
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	1 cut(s)	569
MaeIII	GTNAC	3 cut(s)	67, 148, 724
MalI	GATC	7 cut(s)	53, 252, 549, 641, 1010, 1022, 1153
MboI	GATC	7 cut(s)	51, 250, 547, 639, 1008, 1020, 1151
MboII	GAAGA	6 cut(s)	488, 521, 530, 682, 795, 1183
MhlI	GDGCHC	5 cut(s)	114, 227, 614, 873, 922
MluCI	AATT	3 cut(s)	179, 210, 587
MlyI	GAGTC	2 cut(s)	167, 960
MmeI	TCCRAC	3 cut(s)	355, 1044, 1051
MseI	TTAA	3 cut(s)	182, 209, 297
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	2 cut(s)	81, 810
MspR9I	CCNGG	1 cut(s)	811
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	410, 832
NciI	CCSGG	1 cut(s)	811
NcoI	CCATGG	1 cut(s)	776
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	7 cut(s)	51, 250, 547, 639, 1008, 1020, 1151
NlaIII	CATG	8 cut(s)	58, 144, 424, 541, 620, 763, 780, 1048
NlaIV	GGNNCC	2 cut(s)	320, 1039
NmuCI	GTSAC	2 cut(s)	67, 148
NruI	TCGCGA	1 cut(s)	365
NspI	RCATGY	2 cut(s)	144, 620
NspV	TTCGAA	1 cut(s)	346
PfeI	GAWTC	3 cut(s)	560, 595, 792
PkrI	GCNGC	2 cut(s)	206, 748
PleI	GAGTC	2 cut(s)	167, 960
PpsI	GAGTC	2 cut(s)	167, 960
PshAI	GACNNNNGTC	1 cut(s)	771
PsiI	TTATAA	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	873
PspN4I	GGNNCC	2 cut(s)	320, 1039
PstI	CTGCAG	1 cut(s)	991
RruI	TCGCGA	1 cut(s)	365
RsaI	GTAC	3 cut(s)	392, 630, 1031
RsaNI	GTAC	3 cut(s)	391, 629, 1030
SacI	GAGCTC	1 cut(s)	873
SaqAI	TTAA	3 cut(s)	182, 209, 297
SatI	GCNGC	2 cut(s)	205, 747
Sau3AI	GATC	7 cut(s)	51, 250, 547, 639, 1008, 1020, 1151
ScaI	AGTACT	2 cut(s)	392, 1031
SchI	GAGTC	2 cut(s)	167, 960
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	5 cut(s)	114, 227, 614, 873, 922
SfaNI	GCATC	4 cut(s)	93, 114, 796, 954
SfcI	CTRYAG	1 cut(s)	987
SfuI	TTCGAA	1 cut(s)	346
SmlI	CTYRAG	5 cut(s)	288, 296, 305, 658, 836
SmoI	CTYRAG	5 cut(s)	288, 296, 305, 658, 836
Sse9I	AATT	3 cut(s)	179, 210, 587
SsiI	CCGC	2 cut(s)	205, 815
SspI	AATATT	1 cut(s)	885
SspMI	CTAG	1 cut(s)	668
SstI	GAGCTC	1 cut(s)	873
StyD4I	CCNGG	1 cut(s)	809
StyI	CCWWGG	1 cut(s)	776
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	8 cut(s)	108, 253, 346, 354, 558, 638, 804, 959
TaqII	GACCGA	1 cut(s)	1011
TasI	AATT	3 cut(s)	179, 210, 587
TatI	WGTACW	2 cut(s)	390, 1029
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	3 cut(s)	560, 595, 792
Tru1I	TTAA	3 cut(s)	182, 209, 297
Tru9I	TTAA	3 cut(s)	182, 209, 297
TscAI	CASTG	2 cut(s)	119, 232
TseFI	GTSAC	2 cut(s)	67, 148
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	2 cut(s)	67, 148
TspDTI	ATGAA	3 cut(s)	421, 501, 526
TspRI	CASTG	2 cut(s)	119, 232
Vha464I	CTTAAG	1 cut(s)	296
VneI	GTGCAC	1 cut(s)	223
XceI	RCATGY	2 cut(s)	144, 620
XspI	CTAG	1 cut(s)	668
ZrmI	AGTACT	2 cut(s)	392, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.