RchiOBHm_Chr3g0476021

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
21976987 .. 21978219
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44147

Sequence Viewer

Length: 1233 bp
ATGGCTGAAGATATTGAAGTTCCTCAGTATTTCGTATGCCCGATCTCCCTTCAGATCATGACCGACCCTGTAACAGCTATTACAGGCATCACATACAACCGAGACAGCATCGAGCACTGGCTATTCCACGCCAAGAACACCACCTGCCCCGTAACCAAACAGCCGCTCCCCAAAGACTCCGAGTTAACCCCGAATCACACGTTACGCCGGTTGATCCAGGCGTGGTGCATGGACAATGCCTCTAAAGGCGTGGATCGAATTCCAACTCCGAAACCGCCTCTCAGCAAGGCCCAAGTCGTGAAGCTGCTCAAGGACTTTCCGGACCCGCAGTTCCAGCTAAAAATCATTAGAAAACTGGAGCTGCTCGCTACCGAAAACGAAGGTAACCTAAAGTACATGGCGGAAGCCGGTGTGGCTAAAACCATGCTGTTATTCATCGTAACATGTTATAAAAATGGTAGGGTAGATGGTCTGGAAGAAGCTCTCAGCGTGCTTCACTTTATTCGGATTTCACCCGAAGAATTAAATCATCTTTTGTTAGAGAACAATCAGATCATGGACTCGTTGACGTGGGTTTTGAGCCGTGAAATGGAGAACCAAATCGAGGTGAACACCCACGTCATGTTGGTGCTGAAGTCCATAATTCAGAAGGTCAGTTCAAGCGTGCTAGAAACCCTCAATCCTGAATTTTTCAGGAACATCTTAGGGGTTTTGAGAAATGGTGCCGTTACACAACAAGGCACCAATGCGGCTTTACAAGTGATGCTAGACACTTGTCGCTGTGGAAGCAATCGGATCAAAATGGTGGAATCCGGCGCAGTTTATGAGCTCGTTGAGCTCGAATTGGGTGGTGCAGTTCAGGAAAAGAAAACAACTGAGCTCGTTTTGGGGATACTGTTCCATTTGTGTTCTTGTGCCGCAGGGAGAGCTCAGTTTCTTAGTCATAAAGCAAGCATATTTGTCGTGTCCGAGAGGATCTTGAAGGGTTCGCAGGCGGCCGACGACCGAGCTGTTCTGATCCTTTACTTGATAAGCAAGTACTCTGGAAATAAGATGGTACTTCAGGAAATGTTGGAGTTTGGAACGGTGAAGAAGCTTATAACGCTGATCCAAGTCGATTGTGCTCCATATTTGAAAGAAAAGGCAAGTGAAATTCTTAGTTCACATTCCAGTGAGTGGAAGAACTCTCCTTGTTTTCCTCGGAGCTCAGTCACAGGTCATGATATATATTGA

Protein Analysis

410

Amino Acids

45.91

Weight (kDa)

6.57

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 7 - 79 2.1e-18 U-box domain
ARM_PUB PF25598 112 - 405 5.5e-59 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 450, 1100
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AccB1I GGYRCC 2 cut(s) 722, 740
AccB7I CCANNNNNTGG 1 cut(s) 1176
AccBSI CCGCTC 1 cut(s) 166
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 7 cut(s) 164, 275, 326, 401, 749, 918, 995
AclWI GGATC 6 cut(s) 208, 261, 803, 983, 1012, 1102
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 3 cut(s) 258, 686, 1152
AcuI CTGAAG 4 cut(s) 27, 35, 653, 1046
AfaI GTAC 3 cut(s) 395, 1040, 1059
AfiI CCNNNNNNNGG 3 cut(s) 589, 604, 1176
AflIII ACRYGT 2 cut(s) 198, 443
AgsI TTSAA 4 cut(s) 17, 660, 982, 1135
AjiI CACGTC 2 cut(s) 570, 619
AjnI CCWGG 1 cut(s) 216
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
Alw21I GWGCWC 7 cut(s) 117, 831, 840, 882, 931, 1126, 1208
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 6 cut(s) 208, 261, 803, 983, 1012, 1102
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 2 cut(s) 288, 996
ApeKI GCWGC 2 cut(s) 304, 361
ApoI RAATTY 3 cut(s) 258, 686, 1152
ArsI GACNNNNNNTTYG 2 cut(s) 559, 591
AspLEI GCGC 1 cut(s) 818
AspS9I GGNCC 2 cut(s) 289, 322
AsuHPI GGTGA 3 cut(s) 504, 619, 1099
AvaII GGWCC 1 cut(s) 322
BanI GGYRCC 2 cut(s) 722, 740
BanII GRGCYC 5 cut(s) 831, 840, 882, 931, 1208
Bbv12I GWGCWC 7 cut(s) 117, 831, 840, 882, 931, 1126, 1208
BbvI GCAGC 2 cut(s) 291, 348
BccI CCATC 2 cut(s) 461, 1048
BceAI ACGGC 2 cut(s) 567, 710
BcgI CGANNNNNNTGC 2 cut(s) 943, 977
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 885
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 2 cut(s) 668, 767
BfuAI ACCTGC 1 cut(s) 152
BfuI GTATCC 1 cut(s) 885
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 6 cut(s) 164, 305, 362, 750, 918, 996
BlsI GCNGC 6 cut(s) 165, 306, 363, 751, 919, 997
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 322
BmgBI CACGTC 2 cut(s) 570, 619
BmgT120I GGNCC 2 cut(s) 289, 322
BmiI GGNNCC 3 cut(s) 324, 724, 742
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 3 cut(s) 96, 117, 753
BoxI GACNNNNGTC 1 cut(s) 774
BpmI CTGGAG 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 1199
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 3 cut(s) 589, 604, 1176
Bse118I RCCGGY 2 cut(s) 207, 407
Bse1I ACTGG 3 cut(s) 122, 360, 1170
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 1199
BseLI CCNNNNNNNGG 3 cut(s) 589, 604, 1176
BseMII CTCAG 6 cut(s) 38, 295, 499, 867, 944, 1221
BseNI ACTGG 3 cut(s) 122, 360, 1170
BseX3I CGGCCG 1 cut(s) 996
BseXI GCAGC 2 cut(s) 291, 348
BsgI GTGCAG 1 cut(s) 873
Bsh1285I CGRYCG 2 cut(s) 999, 1006
BshFI GGCC 2 cut(s) 290, 998
BshNI GGYRCC 2 cut(s) 722, 740
BsiEI CGRYCG 2 cut(s) 999, 1006
BsiHKAI GWGCWC 7 cut(s) 117, 831, 840, 882, 931, 1126, 1208
BsiSI CCGG 4 cut(s) 208, 320, 408, 813
BslI CCNNNNNNNGG 3 cut(s) 589, 604, 1176
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 2 cut(s) 290, 998
Bsp1286I GDGCHC 7 cut(s) 117, 831, 840, 882, 931, 1126, 1208
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 9 cut(s) 42, 54, 213, 253, 552, 795, 975, 1017, 1107
BspACI CCGC 7 cut(s) 164, 275, 326, 401, 749, 918, 995
BspANI GGCC 2 cut(s) 290, 998
BspCNI CTCAG 6 cut(s) 37, 294, 498, 868, 943, 1220
BspEI TCCGGA 1 cut(s) 319
BspHI TCATGA 2 cut(s) 57, 1219
BspLI GGNNCC 3 cut(s) 324, 724, 742
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 6 cut(s) 208, 261, 803, 983, 1012, 1102
BspT107I GGYRCC 2 cut(s) 722, 740
BsrBI CCGCTC 1 cut(s) 166
BsrFI RCCGGY 2 cut(s) 207, 407
BsrI ACTGG 3 cut(s) 122, 360, 1170
BssAI RCCGGY 2 cut(s) 207, 407
BssECI CCNNGG 1 cut(s) 1199
BssMI GATC 9 cut(s) 42, 54, 213, 253, 552, 795, 975, 1017, 1107
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 897, 1087
BstC8I GCNNGC 5 cut(s) 366, 491, 665, 952, 993
BstDEI CTNAG 9 cut(s) 24, 281, 485, 703, 876, 930, 938, 1157, 1207
BstEII GGTNACC 1 cut(s) 383
BstHHI GCGC 1 cut(s) 818
BstKTI GATC 9 cut(s) 45, 57, 216, 256, 555, 798, 978, 1020, 1110
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 9 cut(s) 42, 54, 213, 253, 552, 795, 975, 1017, 1107
BstMCI CGRYCG 2 cut(s) 999, 1006
BstMWI GCNNNNNNNGC 6 cut(s) 334, 413, 786, 835, 926, 1102
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 447
BstPAI GACNNNNGTC 1 cut(s) 774
BstPI GGTNACC 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 291, 348
BstX2I RGATCY 1 cut(s) 975
BstYI RGATCY 1 cut(s) 975
BstZI CGGCCG 1 cut(s) 996
BsuI GTATCC 1 cut(s) 885
BsuRI GGCC 2 cut(s) 290, 998
BtrI CACGTC 2 cut(s) 570, 619
BtsIMutI CAGTG 2 cut(s) 115, 1177
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 5 cut(s) 366, 491, 665, 952, 993
CciI TCATGA 2 cut(s) 57, 1219
CfoI GCGC 1 cut(s) 818
Cfr10I RCCGGY 2 cut(s) 207, 407
Cfr13I GGNCC 2 cut(s) 289, 322
Csp6I GTAC 3 cut(s) 394, 1039, 1058
CviAII CATG 8 cut(s) 58, 229, 397, 424, 444, 556, 622, 1220
CviQI GTAC 3 cut(s) 394, 1039, 1058
DdeI CTNAG 9 cut(s) 24, 281, 485, 703, 876, 930, 938, 1157, 1207
DpnI GATC 9 cut(s) 44, 56, 215, 255, 554, 797, 977, 1019, 1109
DpnII GATC 9 cut(s) 42, 54, 213, 253, 552, 795, 975, 1017, 1107
EaeI YGGCCR 1 cut(s) 996
EagI CGGCCG 1 cut(s) 996
EciI GGCGGA 1 cut(s) 416
Ecl136II GAGCTC 5 cut(s) 829, 838, 880, 929, 1206
EclXI CGGCCG 1 cut(s) 996
Eco24I GRGCYC 5 cut(s) 831, 840, 882, 931, 1208
Eco47I GGWCC 1 cut(s) 322
Eco52I CGGCCG 1 cut(s) 996
Eco53kI GAGCTC 5 cut(s) 829, 838, 880, 929, 1206
Eco57I CTGAAG 4 cut(s) 27, 35, 653, 1046
Eco91I GGTNACC 1 cut(s) 383
EcoICRI GAGCTC 5 cut(s) 829, 838, 880, 929, 1206
EcoO65I GGTNACC 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 5 cut(s) 831, 840, 882, 931, 1208
FaeI CATG 8 cut(s) 61, 232, 400, 427, 447, 559, 625, 1223
FatI CATG 8 cut(s) 57, 228, 396, 423, 443, 555, 621, 1219
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 6 cut(s) 164, 305, 362, 750, 918, 996
FriOI GRGCYC 5 cut(s) 831, 840, 882, 931, 1208
Fsp4HI GCNGC 6 cut(s) 164, 305, 362, 750, 918, 996
FspBI CTAG 2 cut(s) 668, 767
GlaI GCGC 1 cut(s) 817
GluI GCNGC 6 cut(s) 164, 305, 362, 750, 918, 996
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 290, 998
HapII CCGG 4 cut(s) 208, 320, 408, 813
HhaI GCGC 1 cut(s) 818
Hin1II CATG 8 cut(s) 61, 232, 400, 427, 447, 559, 625, 1223
Hin6I GCGC 1 cut(s) 816
HinP1I GCGC 1 cut(s) 816
HincII GTYRAC 2 cut(s) 186, 567
HindII GTYRAC 2 cut(s) 186, 567
HindIII AAGCTT 1 cut(s) 1094
HinfI GANTC 4 cut(s) 176, 193, 560, 809
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 4 cut(s) 208, 320, 408, 813
HphI GGTGA 3 cut(s) 504, 619, 1099
Hpy166II GTNNAC 4 cut(s) 186, 567, 610, 1163
Hpy8I GTNNAC 4 cut(s) 186, 567, 610, 1163
Hpy99I CGWCG 1 cut(s) 1004
HpyAV CCTTC 4 cut(s) 59, 374, 643, 976
HpyCH4III ACNGT 2 cut(s) 897, 1087
HpyCH4IV ACGT 3 cut(s) 200, 569, 618
HpyCH4V TGCA 2 cut(s) 228, 854
HpyF10VI GCNNNNNNNGC 6 cut(s) 334, 413, 786, 835, 926, 1102
HpyF3I CTNAG 9 cut(s) 24, 281, 485, 703, 876, 930, 938, 1157, 1207
HpySE526I ACGT 3 cut(s) 200, 569, 618
Hsp92II CATG 8 cut(s) 61, 232, 400, 427, 447, 559, 625, 1223
HspAI GCGC 1 cut(s) 816
Kpn2I TCCGGA 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 9 cut(s) 42, 54, 213, 253, 552, 795, 975, 1017, 1107
LmnI GCTCC 4 cut(s) 171, 358, 1129, 1203
Lsp1109I GCAGC 2 cut(s) 291, 348
LweI GCATC 3 cut(s) 96, 117, 753
MaeI CTAG 2 cut(s) 668, 767
MaeII ACGT 3 cut(s) 200, 569, 618
MaeIII GTNAC 7 cut(s) 70, 151, 201, 383, 439, 727, 1210
MalI GATC 9 cut(s) 44, 56, 215, 255, 554, 797, 977, 1019, 1109
MbiI CCGCTC 1 cut(s) 166
MboI GATC 9 cut(s) 42, 54, 213, 253, 552, 795, 975, 1017, 1107
MboII GAAGA 5 cut(s) 20, 488, 530, 1102, 1192
MflI RGATCY 1 cut(s) 975
MhlI GDGCHC 7 cut(s) 117, 831, 840, 882, 931, 1126, 1208
MluCI AATT 6 cut(s) 258, 521, 642, 686, 842, 1152
MlyI GAGTC 2 cut(s) 170, 554
MmeI TCCRAC 2 cut(s) 287, 1053
MnlI CCTC 7 cut(s) 33, 250, 288, 598, 686, 966, 1209
MroI TCCGGA 1 cut(s) 319
MseI TTAA 2 cut(s) 185, 524
MslI CAYNNNNRTG 2 cut(s) 626, 1170
MspI CCGG 4 cut(s) 208, 320, 408, 813
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 6 cut(s) 334, 413, 786, 835, 926, 1102
NdeII GATC 9 cut(s) 42, 54, 213, 253, 552, 795, 975, 1017, 1107
NlaIII CATG 8 cut(s) 61, 232, 400, 427, 447, 559, 625, 1223
NlaIV GGNNCC 3 cut(s) 324, 724, 742
NmuCI GTSAC 1 cut(s) 1210
NspI RCATGY 1 cut(s) 447
PagI TCATGA 2 cut(s) 57, 1219
PaqCI CACCTGC 1 cut(s) 152
PciI ACATGT 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PfeI GAWTC 2 cut(s) 193, 809
PflMI CCANNNNNTGG 1 cut(s) 1176
PkrI GCNGC 6 cut(s) 165, 306, 363, 751, 919, 997
PleI GAGTC 2 cut(s) 170, 554
PpsI GAGTC 2 cut(s) 170, 554
PscI ACATGT 1 cut(s) 443
PshAI GACNNNNGTC 1 cut(s) 774
PsiI TTATAA 2 cut(s) 450, 1100
Psp124BI GAGCTC 5 cut(s) 831, 840, 882, 931, 1208
Psp6I CCWGG 1 cut(s) 216
PspEI GGTNACC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 3 cut(s) 324, 724, 742
PspPI GGNCC 2 cut(s) 289, 322
PsuI RGATCY 1 cut(s) 975
RsaI GTAC 3 cut(s) 395, 1040, 1059
RsaNI GTAC 3 cut(s) 394, 1039, 1058
RseI CAYNNNNRTG 2 cut(s) 626, 1170
SacI GAGCTC 5 cut(s) 831, 840, 882, 931, 1208
SaqAI TTAA 2 cut(s) 185, 524
SatI GCNGC 6 cut(s) 164, 305, 362, 750, 918, 996
Sau3AI GATC 9 cut(s) 42, 54, 213, 253, 552, 795, 975, 1017, 1107
Sau96I GGNCC 2 cut(s) 289, 322
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 2 cut(s) 170, 554
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 7 cut(s) 117, 831, 840, 882, 931, 1126, 1208
SfaNI GCATC 3 cut(s) 96, 117, 753
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 2 cut(s) 626, 1170
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 6 cut(s) 258, 521, 642, 686, 842, 1152
SsiI CCGC 7 cut(s) 164, 275, 326, 401, 749, 918, 995
SspMI CTAG 2 cut(s) 668, 767
SstI GAGCTC 5 cut(s) 831, 840, 882, 931, 1208
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 897, 1087
TaiI ACGT 3 cut(s) 203, 572, 621
TaqI TCGA 5 cut(s) 111, 256, 603, 840, 1116
TaqII GACCGA 2 cut(s) 77, 1020
TasI AATT 6 cut(s) 258, 521, 642, 686, 842, 1152
TatI WGTACW 2 cut(s) 393, 1038
TauI GCSGC 4 cut(s) 166, 752, 920, 998
TfiI GAWTC 2 cut(s) 193, 809
Tru1I TTAA 2 cut(s) 185, 524
Tru9I TTAA 2 cut(s) 185, 524
TscAI CASTG 2 cut(s) 122, 1177
TseFI GTSAC 1 cut(s) 1210
TseI GCWGC 2 cut(s) 304, 361
Tsp45I GTSAC 1 cut(s) 1210
TspDTI ATGAA 1 cut(s) 424
TspRI CASTG 2 cut(s) 122, 1177
Van91I CCANNNNNTGG 1 cut(s) 1176
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 3 cut(s) 258, 686, 1152
XceI RCATGY 1 cut(s) 447
XspI CTAG 2 cut(s) 668, 767
ZrmI AGTACT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.