MD12G1040800.v1.1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
4514194 .. 4515405
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1040800.v1.1.491

Sequence Viewer

Length: 1212 bp
ATGGATGATATTGAAGTTCCTCAGTATTTCATCTGCCCAATATCTCTTCAGATCATGAAAGACCCTGTGACAACCATTACAGGTATCACGTATGACCGGGAGAGCATCGAGCACTGGCTATTCCAGAGCAAGAACATCACATGTCCTGCCACCAAACAGCCGCTCCCGAAAGACTCCGAACTAACCCCCAACCACACGTTGCGCCGCTTAATTCAGGCGTGGTGCACTGACAATGCCTCCTACGGCATTGATCGAATACCAACTCCGAAACCACCTCTCAACAAGGCTCAAGTCCTCAAGCTCCTCAAGGACTTTTGGCACCCTCAGCTCCAGCTGAATATTATTCGAAAGTTGGAGTTCCTCGCGGTGGAAAACGAAGGGAATAGGAAGTACATGGTGGAAGCCGGCGTGGCTAAGGCCATGTTGTTATTCATTACAAACATATGTTACAAGAACGGCCAGGTGGATGGCCTAGAAGAAGCCCTTAGCATACTTCACTTTGTTCGGATTTCTTCCGAAGAATTAAACCGTCTCTTTATGGAAAACGATCAGATCATCAATTCGTTGACATGGGTTTTTGGTTGCGAAACGGAGAATCAAATCGCGGTCAGTACGCATGCGGTGTTGGTGCTCAAATATATCATCCAAAAGGCAAACTCAACAGTGCTAGAAACCCTAGACCGTAATTTTTTTAAGAAACTTGTTGGGATTTTGAGAAATGGGGTCACACAACAAGGGGTGAATGCAGCTCTACATGTCATGTTAGACGCTTGTCCTTGGGGAAGAAATCGAATCAAGATGGTCGACGCTGGGGCTGTTTACGAGCTCATAGAGCTTGAATTTTGTGCTCCAGAAAAGAGAACAACGGAGCTCATTTTTGGTATATTGTTTCATTTGTGTTCTTGTGCTGATGGGAGAGCTCAGTTTATTAGTCACAAAGGAGGCATCTCTGTTGTGTCAAAGAGACTCCTTAGGGTTTCTCCAACAACTAATGACCGAGCAGTTTTGATCCTTTCTATGGTAAGCAAGTACTCAGGAACCAACTCGGTGCTTCAGGAGATGTTGGAGGTTGGAGCTGTGCCTAAGCTTTGCACTTTGCTCCAAGTTGACTGTGCTCCATACCTGAAAGACAAAGCAAGGGAAATCCTTAAATCACATTATGAGGAGTGGAAGAACTGTCCTTGTCTTGGTATGTCTCTGTATCCCAGATGA

Protein Analysis

404

Amino Acids

45.66

Weight (kDa)

7.89

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 6 - 78 4.1e-19 U-box domain
ARM_PUB PF25598 111 - 397 2.2e-64 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AccBSI CCGCTC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 804
AccII CGCG 2 cut(s) 365, 605
AciI CCGC 5 cut(s) 161, 205, 365, 605, 620
AclWI GGATC 1 cut(s) 1003
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 1 cut(s) 839
AcuI CTGAAG 2 cut(s) 32, 1037
AfaI GTAC 3 cut(s) 392, 613, 1031
AfiI CCNNNNNNNGG 3 cut(s) 367, 1018, 1187
AflIII ACRYGT 3 cut(s) 140, 195, 754
AgsI TTSAA 2 cut(s) 14, 839
AjnI CCWGG 1 cut(s) 459
Alw21I GWGCWC 8 cut(s) 114, 227, 633, 828, 850, 873, 922, 1117
Alw26I GTCTC 3 cut(s) 536, 958, 1200
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 1 cut(s) 1003
AoxI GGCC 3 cut(s) 417, 457, 469
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 746
ApoI RAATTY 1 cut(s) 839
AspLEI GCGC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 751
AsuII TTCGAA 1 cut(s) 346
AxyI CCTNAGG 1 cut(s) 971
BaeGI GKGCMC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 3 cut(s) 828, 873, 922
Bbv12I GWGCWC 8 cut(s) 114, 227, 633, 828, 850, 873, 922, 1117
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 758
BccI CCATC 3 cut(s) 461, 793, 905
BceAI ACGGC 2 cut(s) 259, 472
BciT130I CCWGG 1 cut(s) 461
BciVI GTATCC 1 cut(s) 1212
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 3 cut(s) 536, 958, 1200
BfaI CTAG 3 cut(s) 473, 668, 677
BfuI GTATCC 1 cut(s) 1212
BglI GCCNNNNNGGC 1 cut(s) 410
BisI GCNGC 3 cut(s) 161, 205, 747
BlsI GCNGC 3 cut(s) 162, 206, 748
BmcAI AGTACT 1 cut(s) 1031
Bme1390I CCNGG 2 cut(s) 98, 461
BmiI GGNNCC 2 cut(s) 320, 1039
BmrFI CCNGG 2 cut(s) 98, 461
BmsI GCATC 2 cut(s) 114, 954
BoxI GACNNNNGTC 1 cut(s) 771
BpmI CTGGAG 2 cut(s) 314, 834
Bpu10I CCTNAGC 4 cut(s) 324, 414, 485, 1083
Bpu14I TTCGAA 1 cut(s) 346
BpuEI CTTGAG 3 cut(s) 273, 281, 290
BpuMI CCSGG 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 776
BsaXI ACNNNNNCTCC 4 cut(s) 147, 177, 221, 251
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 1018, 1187
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 119
Bse21I CCTNAGG 1 cut(s) 971
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 1 cut(s) 776
BseGI GGATG 3 cut(s) 10, 472, 642
BseLI CCNNNNNNNGG 3 cut(s) 367, 1018, 1187
BseMII CTCAG 4 cut(s) 35, 338, 935, 1047
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 2 cut(s) 293, 1178
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 1 cut(s) 758
BseYI CCCAGC 1 cut(s) 809
Bsh1236I CGCG 2 cut(s) 365, 605
BshFI GGCC 3 cut(s) 419, 459, 471
BshNI GGYRCC 1 cut(s) 318
BsiHKAI GWGCWC 8 cut(s) 114, 227, 633, 828, 850, 873, 922, 1117
BsiSI CCGG 2 cut(s) 97, 405
BslI CCNNNNNNNGG 3 cut(s) 367, 1018, 1187
BsmAI GTCTC 3 cut(s) 536, 958, 1200
BsmBI CGTCTC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 3 cut(s) 419, 459, 471
Bsp119I TTCGAA 1 cut(s) 346
Bsp1286I GDGCHC 8 cut(s) 114, 227, 633, 828, 850, 873, 922, 1117
Bsp143I GATC 5 cut(s) 51, 250, 547, 552, 1008
BspACI CCGC 5 cut(s) 161, 205, 365, 605, 620
BspANI GGCC 3 cut(s) 419, 459, 471
BspCNI CTCAG 4 cut(s) 34, 337, 934, 1046
BspFNI CGCG 2 cut(s) 365, 605
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 320, 1039
BspPI GGATC 1 cut(s) 1003
BspT104I TTCGAA 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 318
BsrBI CCGCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 776
BssMI GATC 5 cut(s) 51, 250, 547, 552, 1008
BssT1I CCWWGG 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 5 cut(s) 530, 664, 683, 1112, 1178
Bst6I CTCTTC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 406, 618
BstDEI CTNAG 8 cut(s) 21, 324, 414, 485, 921, 971, 1033, 1083
BstF5I GGATG 3 cut(s) 10, 472, 642
BstFNI CGCG 2 cut(s) 365, 605
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 5 cut(s) 54, 253, 550, 555, 1011
BstMAI GTCTC 3 cut(s) 536, 958, 1200
BstMBI GATC 5 cut(s) 51, 250, 547, 552, 1008
BstMWI GCNNNNNNNGC 3 cut(s) 325, 410, 832
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 3 cut(s) 144, 620, 758
BstPAI GACNNNNGTC 1 cut(s) 771
BstSCI CCNGG 2 cut(s) 96, 459
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 2 cut(s) 365, 605
BstV1I GCAGC 1 cut(s) 758
BstXI CCANNNNNNTGG 1 cut(s) 467
Bsu36I CCTNAGG 1 cut(s) 971
BsuI GTATCC 1 cut(s) 1212
BsuRI GGCC 3 cut(s) 419, 459, 471
BtsCI GGATG 3 cut(s) 10, 472, 642
BtsIMutI CAGTG 3 cut(s) 112, 225, 669
Cac8I GCNNGC 2 cut(s) 406, 618
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 404
CseI GACGC 2 cut(s) 776, 815
Csp6I GTAC 3 cut(s) 391, 612, 1030
CviAII CATG 8 cut(s) 55, 141, 394, 421, 570, 617, 755, 760
CviQI GTAC 3 cut(s) 391, 612, 1030
DdeI CTNAG 8 cut(s) 21, 324, 414, 485, 921, 971, 1033, 1083
DpnI GATC 5 cut(s) 53, 252, 549, 554, 1010
DpnII GATC 5 cut(s) 51, 250, 547, 552, 1008
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 3 cut(s) 826, 871, 920
Eco130I CCWWGG 1 cut(s) 776
Eco24I GRGCYC 3 cut(s) 828, 873, 922
Eco53kI GAGCTC 3 cut(s) 826, 871, 920
Eco57I CTGAAG 2 cut(s) 32, 1037
Eco81I CCTNAGG 1 cut(s) 971
EcoICRI GAGCTC 3 cut(s) 826, 871, 920
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 776
EcoT38I GRGCYC 3 cut(s) 828, 873, 922
ErhI CCWWGG 1 cut(s) 776
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 8 cut(s) 58, 144, 397, 424, 573, 620, 758, 763
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 8 cut(s) 54, 140, 393, 420, 569, 616, 754, 759
FauNDI CATATG 1 cut(s) 443
FblI GTMKAC 1 cut(s) 804
Fnu4HI GCNGC 3 cut(s) 161, 205, 747
FokI GGATG 3 cut(s) 17, 479, 629
FriOI GRGCYC 3 cut(s) 828, 873, 922
Fsp4HI GCNGC 3 cut(s) 161, 205, 747
FspBI CTAG 3 cut(s) 473, 668, 677
GlaI GCGC 1 cut(s) 203
GluI GCNGC 3 cut(s) 161, 205, 747
GsaI CCCAGC 1 cut(s) 813
GsuI CTGGAG 2 cut(s) 314, 834
HaeIII GGCC 3 cut(s) 419, 459, 471
HapII CCGG 2 cut(s) 97, 405
HgaI GACGC 2 cut(s) 776, 815
HhaI GCGC 1 cut(s) 204
Hin1II CATG 8 cut(s) 58, 144, 397, 424, 573, 620, 758, 763
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 3 cut(s) 567, 805, 1108
HindII GTYRAC 3 cut(s) 567, 805, 1108
HindIII AAGCTT 1 cut(s) 1085
HinfI GANTC 4 cut(s) 173, 595, 792, 966
HpaII CCGG 2 cut(s) 97, 405
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 5 cut(s) 225, 567, 805, 820, 1108
Hpy188I TCNGA 6 cut(s) 51, 178, 267, 507, 517, 552
Hpy188III TCNNGA 7 cut(s) 55, 124, 166, 796, 851, 1035, 1055
Hpy8I GTNNAC 5 cut(s) 225, 567, 805, 820, 1108
Hpy99I CGWCG 1 cut(s) 809
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 5 cut(s) 530, 664, 683, 1112, 1178
HpyCH4IV ACGT 2 cut(s) 89, 197
HpyCH4V TGCA 3 cut(s) 225, 746, 1092
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 410, 832
HpyF3I CTNAG 8 cut(s) 21, 324, 414, 485, 921, 971, 1033, 1083
HpySE526I ACGT 2 cut(s) 89, 197
Hsp92II CATG 8 cut(s) 58, 144, 397, 424, 573, 620, 758, 763
HspAI GCGC 1 cut(s) 202
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Kzo9I GATC 5 cut(s) 51, 250, 547, 552, 1008
LmnI GCTCC 8 cut(s) 168, 306, 333, 853, 868, 1073, 1104, 1120
Lsp1109I GCAGC 1 cut(s) 758
LweI GCATC 2 cut(s) 114, 954
MaeI CTAG 3 cut(s) 473, 668, 677
MaeII ACGT 2 cut(s) 89, 197
MaeIII GTNAC 4 cut(s) 67, 446, 724, 932
MalI GATC 5 cut(s) 53, 252, 549, 554, 1010
MbiI CCGCTC 1 cut(s) 163
MboI GATC 5 cut(s) 51, 250, 547, 552, 1008
MboII GAAGA 6 cut(s) 38, 488, 504, 530, 795, 1183
MhlI GDGCHC 8 cut(s) 114, 227, 633, 828, 850, 873, 922, 1117
MluCI AATT 5 cut(s) 210, 521, 559, 685, 839
MlyI GAGTC 2 cut(s) 167, 960
MmeI TCCRAC 4 cut(s) 333, 1007, 1044, 1051
MroNI GCCGGC 1 cut(s) 404
MseI TTAA 4 cut(s) 209, 524, 693, 1149
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 2 cut(s) 97, 405
MspR9I CCNGG 2 cut(s) 98, 461
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 2 cut(s) 365, 605
MwoI GCNNNNNNNGC 3 cut(s) 325, 410, 832
NaeI GCCGGC 1 cut(s) 406
NciI CCSGG 1 cut(s) 98
NdeI CATATG 1 cut(s) 443
NdeII GATC 5 cut(s) 51, 250, 547, 552, 1008
NgoMIV GCCGGC 1 cut(s) 404
NlaIII CATG 8 cut(s) 58, 144, 397, 424, 573, 620, 758, 763
NlaIV GGNNCC 2 cut(s) 320, 1039
NmuCI GTSAC 3 cut(s) 67, 724, 932
NspI RCATGY 3 cut(s) 144, 620, 758
NspV TTCGAA 1 cut(s) 346
PaeI GCATGC 1 cut(s) 620
PagI TCATGA 1 cut(s) 54
PciI ACATGT 2 cut(s) 140, 754
PctI GAATGC 1 cut(s) 748
PdiI GCCGGC 1 cut(s) 406
PfeI GAWTC 2 cut(s) 595, 792
PkrI GCNGC 3 cut(s) 162, 206, 748
PleI GAGTC 2 cut(s) 167, 960
PpsI GAGTC 2 cut(s) 167, 960
Ppu21I YACGTR 1 cut(s) 90
PscI ACATGT 2 cut(s) 140, 754
PshAI GACNNNNGTC 1 cut(s) 771
Psp124BI GAGCTC 3 cut(s) 828, 873, 922
Psp6I CCWGG 1 cut(s) 459
PspFI CCCAGC 1 cut(s) 809
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 320, 1039
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 3 cut(s) 392, 613, 1031
RsaNI GTAC 3 cut(s) 391, 612, 1030
SacI GAGCTC 3 cut(s) 828, 873, 922
SalI GTCGAC 1 cut(s) 803
SaqAI TTAA 4 cut(s) 209, 524, 693, 1149
SatI GCNGC 3 cut(s) 161, 205, 747
Sau3AI GATC 5 cut(s) 51, 250, 547, 552, 1008
ScaI AGTACT 1 cut(s) 1031
SchI GAGTC 2 cut(s) 167, 960
ScrFI CCNGG 2 cut(s) 98, 461
SduI GDGCHC 8 cut(s) 114, 227, 633, 828, 850, 873, 922, 1117
SfaNI GCATC 2 cut(s) 114, 954
SfuI TTCGAA 1 cut(s) 346
SmlI CTYRAG 3 cut(s) 288, 296, 305
SmoI CTYRAG 3 cut(s) 288, 296, 305
SphI GCATGC 1 cut(s) 620
Sse9I AATT 5 cut(s) 210, 521, 559, 685, 839
SsiI CCGC 5 cut(s) 161, 205, 365, 605, 620
SspI AATATT 1 cut(s) 340
SspMI CTAG 3 cut(s) 473, 668, 677
SstI GAGCTC 3 cut(s) 828, 873, 922
StyD4I CCNGG 2 cut(s) 96, 459
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 5 cut(s) 530, 664, 683, 1112, 1178
TaiI ACGT 2 cut(s) 92, 200
TaqI TCGA 5 cut(s) 108, 253, 346, 790, 804
TaqII GACCGA 1 cut(s) 1011
TasI AATT 5 cut(s) 210, 521, 559, 685, 839
TatI WGTACW 2 cut(s) 390, 1029
TauI GCSGC 2 cut(s) 163, 207
TfiI GAWTC 2 cut(s) 595, 792
Tru1I TTAA 4 cut(s) 209, 524, 693, 1149
Tru9I TTAA 4 cut(s) 209, 524, 693, 1149
TscAI CASTG 3 cut(s) 119, 232, 669
TseFI GTSAC 3 cut(s) 67, 724, 932
TseI GCWGC 1 cut(s) 746
Tsp45I GTSAC 3 cut(s) 67, 724, 932
TspDTI ATGAA 4 cut(s) 19, 71, 421, 881
TspGWI ACGGA 2 cut(s) 605, 881
TspRI CASTG 3 cut(s) 119, 232, 669
VneI GTGCAC 1 cut(s) 223
XapI RAATTY 1 cut(s) 839
XceI RCATGY 3 cut(s) 144, 620, 758
XmiI GTMKAC 1 cut(s) 804
XspI CTAG 3 cut(s) 473, 668, 677
ZrmI AGTACT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.