FvH4_6g20390

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
14009364 .. 14010842
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20390.t1

Sequence Viewer

Length: 1233 bp
ATGGCTGAAGATATTGATGTTCCTCAGTATTTCGTATGCCCTATTTCCCTTCAGATCATGACAGACCCTGTAACAGCCATTACAGGCATCACATACGACCGAGACAGCATCGAGCACTGGCTATTCCACGCCAAGAACACCACCTGCCCTGTAACCAAACAGCGTCTTCCCAAAGACTCCGAGTTAACTCCTAATCACACGTTACGCCGTTTGATCCAGGCGTGGTGCACAGACAATGCCTCTAAAGGCGTGAATCGAATTCCGACTCCGAAACCACCTCTCAGCAAAGCTCAAGTCGTGAAGCTGCTCAAGGACTTTCCAGACCCGCAGTTCCAGCTGAAAATCGTTCGAAAACTGGAGCTGCTTGCTACCGAAAACGAAGGTAACCTAAAATACATGGCGGAAGCCGGTGTGGCAAAAACAATGCTGTTATTCATCGTAACATGTTATAAAAATGGTAGGGTTGATGGTCTGGAAGAAGCTCTCAGCGTGCTTCACTTTGTTCGGATTCCACCCGATGAATTAAATCATCTTTTGTTAGAGAACAATCACATTATGGACTCGTTGACGTGGGTTTTGAGCCGCGAGATGGAGAACCAAATCGCGGTGAACACGCACGTCATGTTGGTGCTCAAGTCCATGATTCAGAAGGTGAGTTCAAGCGTGCTAGAAACTCTCAACCCTGAATTTTTCAGGAACATTTTAGGGGTTTTGAGAAATGGTGCCGTCACGCAACAAGGCATTAATGCGGCTCTACAAGTGATGCTAGACACTTGCCGCTGCGGAAGCAATCGAATCAAATTGGTTGAATCCGGCGCAGTTTATGAGCTCGTTGAGCTCGAATTAGGTGGTGCAGTTCACGAAAAGAAAACTACTGAGCTCGTTTTGGGGATACTATTCCATTTGTGTTCTTGTGCGGAAGGGAGAGCTCAGTTTCTTGGTCATAAAGCAAGCATATTAGTAGTGTCCGATAGGATCTTGAAGGGTTCGCAGGCGGCCGACGATCGAGCTGTTCTGATCCTTTACTTGATAAGCAAGTACTCTGGAAATAAGATGGTGCTTCAGGAAATGTTGGAGTTTGGAGCTGTGAAGAAGCTTATAATGTTGATCCAAGTCGACTGTGCTCCATATTTGAAAGAAAAAGCAAGGGAAATTCTTAGTTCACATTCTGGTGAGTGGAAGAACTCACCTTGTTTTCCTCGGAGCTCTGTCACAGGTCATGATATATATTGA

Protein Analysis

411

Amino Acids

45.89

Weight (kDa)

7.17

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 7 - 79 1.1e-18 U-box domain
ARM_PUB PF25598 112 - 405 2.8e-59 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 450, 1100
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 722
AccI GTMKAC 1 cut(s) 1116
AccII CGCG 2 cut(s) 585, 605
AciI CCGC 9 cut(s) 326, 401, 583, 605, 749, 778, 783, 917, 995
AclWI GGATC 4 cut(s) 208, 983, 1012, 1102
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 3 cut(s) 258, 686, 1152
AcuI CTGAAG 3 cut(s) 27, 35, 1046
AfaI GTAC 1 cut(s) 1040
AfiI CCNNNNNNNGG 2 cut(s) 589, 604
AflIII ACRYGT 2 cut(s) 198, 443
AgsI TTSAA 4 cut(s) 660, 809, 982, 1135
AjiI CACGTC 2 cut(s) 570, 619
AjnI CCWGG 1 cut(s) 216
Alw21I GWGCWC 9 cut(s) 117, 230, 633, 831, 840, 882, 931, 1126, 1208
Alw26I GTCTC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 226
AlwI GGATC 4 cut(s) 208, 983, 1012, 1102
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 1 cut(s) 996
ApaLI GTGCAC 1 cut(s) 226
ApeKI GCWGC 3 cut(s) 304, 361, 780
ApoI RAATTY 3 cut(s) 258, 686, 1152
ArsI GACNNNNNNTTYG 4 cut(s) 279, 311, 559, 591
AseI ATTAAT 1 cut(s) 744
AspLEI GCGC 1 cut(s) 818
AsuHPI GGTGA 4 cut(s) 619, 664, 1179, 1184
AsuII TTCGAA 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 722
BanII GRGCYC 5 cut(s) 831, 840, 882, 931, 1208
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 9 cut(s) 117, 230, 633, 831, 840, 882, 931, 1126, 1208
BbvI GCAGC 3 cut(s) 291, 348, 767
BccI CCATC 3 cut(s) 461, 583, 1048
BceAI ACGGC 2 cut(s) 192, 710
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 885
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 2 cut(s) 668, 767
BfuAI ACCTGC 1 cut(s) 152
BfuI GTATCC 1 cut(s) 885
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 7 cut(s) 305, 362, 583, 750, 778, 781, 996
BlsI GCNGC 7 cut(s) 306, 363, 584, 751, 779, 782, 997
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 1 cut(s) 218
BmgBI CACGTC 2 cut(s) 570, 619
BmiI GGNNCC 1 cut(s) 724
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 3 cut(s) 96, 117, 753
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 377
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 3 cut(s) 276, 293, 617
BsaJI CCNNGG 1 cut(s) 1199
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 604
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 2 cut(s) 122, 360
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 1199
BseLI CCNNNNNNNGG 2 cut(s) 589, 604
BseMII CTCAG 5 cut(s) 38, 295, 499, 867, 944
BseNI ACTGG 2 cut(s) 122, 360
BseSI GKGCMC 1 cut(s) 230
BseX3I CGGCCG 1 cut(s) 996
BseXI GCAGC 3 cut(s) 291, 348, 767
BsgI GTGCAG 1 cut(s) 873
Bsh1236I CGCG 2 cut(s) 585, 605
Bsh1285I CGRYCG 3 cut(s) 100, 999, 1006
BshFI GGCC 1 cut(s) 998
BshNI GGYRCC 1 cut(s) 722
BsiEI CGRYCG 3 cut(s) 100, 999, 1006
BsiHKAI GWGCWC 9 cut(s) 117, 230, 633, 831, 840, 882, 931, 1126, 1208
BsiSI CCGG 2 cut(s) 408, 813
BslI CCNNNNNNNGG 2 cut(s) 589, 604
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 998
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 9 cut(s) 117, 230, 633, 831, 840, 882, 931, 1126, 1208
Bsp143I GATC 6 cut(s) 54, 213, 975, 1003, 1017, 1107
BspACI CCGC 9 cut(s) 326, 401, 583, 605, 749, 778, 783, 917, 995
BspANI GGCC 1 cut(s) 998
BspCNI CTCAG 5 cut(s) 37, 294, 498, 868, 943
BspFNI CGCG 2 cut(s) 585, 605
BspHI TCATGA 2 cut(s) 57, 1219
BspLI GGNNCC 1 cut(s) 724
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 4 cut(s) 208, 983, 1012, 1102
BspT104I TTCGAA 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 2 cut(s) 122, 360
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 1199
BssMI GATC 6 cut(s) 54, 213, 975, 1003, 1017, 1107
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 1121
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 5 cut(s) 366, 491, 665, 952, 993
BstDEI CTNAG 6 cut(s) 24, 281, 485, 876, 930, 1157
BstEII GGTNACC 1 cut(s) 383
BstFNI CGCG 2 cut(s) 585, 605
BstHHI GCGC 1 cut(s) 818
BstKTI GATC 6 cut(s) 57, 216, 978, 1006, 1020, 1110
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 6 cut(s) 54, 213, 975, 1003, 1017, 1107
BstMCI CGRYCG 3 cut(s) 100, 999, 1006
BstMWI GCNNNNNNNGC 4 cut(s) 334, 413, 786, 835
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 447
BstPI GGTNACC 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 2 cut(s) 585, 605
BstV1I GCAGC 3 cut(s) 291, 348, 767
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 975
BstYI RGATCY 1 cut(s) 975
BstZI CGGCCG 1 cut(s) 996
BsuI GTATCC 1 cut(s) 885
BsuRI GGCC 1 cut(s) 998
BtrI CACGTC 2 cut(s) 570, 619
BtsIMutI CAGTG 1 cut(s) 115
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 5 cut(s) 366, 491, 665, 952, 993
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 2 cut(s) 57, 1219
CfoI GCGC 1 cut(s) 818
Cfr10I RCCGGY 1 cut(s) 407
CseI GACGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 1039
CviAII CATG 6 cut(s) 58, 397, 444, 622, 640, 1220
CviQI GTAC 1 cut(s) 1039
DdeI CTNAG 6 cut(s) 24, 281, 485, 876, 930, 1157
DpnI GATC 6 cut(s) 56, 215, 977, 1005, 1019, 1109
DpnII GATC 6 cut(s) 54, 213, 975, 1003, 1017, 1107
EaeI YGGCCR 1 cut(s) 996
EagI CGGCCG 1 cut(s) 996
EciI GGCGGA 1 cut(s) 416
Ecl136II GAGCTC 5 cut(s) 829, 838, 880, 929, 1206
EclXI CGGCCG 1 cut(s) 996
Eco24I GRGCYC 5 cut(s) 831, 840, 882, 931, 1208
Eco52I CGGCCG 1 cut(s) 996
Eco53kI GAGCTC 5 cut(s) 829, 838, 880, 929, 1206
Eco57I CTGAAG 3 cut(s) 27, 35, 1046
Eco91I GGTNACC 1 cut(s) 383
EcoICRI GAGCTC 5 cut(s) 829, 838, 880, 929, 1206
EcoO65I GGTNACC 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 5 cut(s) 831, 840, 882, 931, 1208
FaeI CATG 6 cut(s) 61, 400, 447, 625, 643, 1223
FatI CATG 6 cut(s) 57, 396, 443, 621, 639, 1219
FauI CCCGC 1 cut(s) 333
FblI GTMKAC 1 cut(s) 1116
Fnu4HI GCNGC 7 cut(s) 305, 362, 583, 750, 778, 781, 996
FriOI GRGCYC 5 cut(s) 831, 840, 882, 931, 1208
Fsp4HI GCNGC 7 cut(s) 305, 362, 583, 750, 778, 781, 996
FspBI CTAG 2 cut(s) 668, 767
GlaI GCGC 1 cut(s) 817
GluI GCNGC 7 cut(s) 305, 362, 583, 750, 778, 781, 996
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 1 cut(s) 998
HapII CCGG 2 cut(s) 408, 813
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 818
Hin1II CATG 6 cut(s) 61, 400, 447, 625, 643, 1223
Hin6I GCGC 1 cut(s) 816
HinP1I GCGC 1 cut(s) 816
HincII GTYRAC 3 cut(s) 186, 567, 1117
HindII GTYRAC 3 cut(s) 186, 567, 1117
HindIII AAGCTT 1 cut(s) 1094
HinfI GANTC 8 cut(s) 176, 253, 265, 508, 560, 643, 795, 809
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 2 cut(s) 408, 813
HphI GGTGA 4 cut(s) 619, 664, 1179, 1184
Hpy166II GTNNAC 7 cut(s) 186, 228, 567, 610, 859, 1117, 1163
Hpy188I TCNGA 9 cut(s) 54, 181, 264, 270, 507, 648, 970, 1017, 1203
Hpy8I GTNNAC 7 cut(s) 186, 228, 567, 610, 859, 1117, 1163
Hpy99I CGWCG 1 cut(s) 1004
HpyAV CCTTC 5 cut(s) 59, 374, 643, 914, 976
HpyCH4III ACNGT 1 cut(s) 1121
HpyCH4IV ACGT 3 cut(s) 200, 569, 618
HpyCH4V TGCA 2 cut(s) 228, 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 334, 413, 786, 835
HpyF3I CTNAG 6 cut(s) 24, 281, 485, 876, 930, 1157
HpySE526I ACGT 3 cut(s) 200, 569, 618
Hsp92II CATG 6 cut(s) 61, 400, 447, 625, 643, 1223
HspAI GCGC 1 cut(s) 816
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 6 cut(s) 54, 213, 975, 1003, 1017, 1107
LmnI GCTCC 4 cut(s) 358, 1082, 1129, 1203
Lsp1109I GCAGC 3 cut(s) 291, 348, 767
LweI GCATC 3 cut(s) 96, 117, 753
MaeI CTAG 2 cut(s) 668, 767
MaeII ACGT 3 cut(s) 200, 569, 618
MaeIII GTNAC 7 cut(s) 70, 151, 201, 383, 439, 727, 1210
MalI GATC 6 cut(s) 56, 215, 977, 1005, 1019, 1109
MboI GATC 6 cut(s) 54, 213, 975, 1003, 1017, 1107
MboII GAAGA 5 cut(s) 20, 158, 488, 1102, 1192
MflI RGATCY 1 cut(s) 975
MhlI GDGCHC 9 cut(s) 117, 230, 633, 831, 840, 882, 931, 1126, 1208
MluCI AATT 6 cut(s) 258, 521, 686, 800, 842, 1152
MlyI GAGTC 3 cut(s) 170, 259, 554
MmeI TCCRAC 2 cut(s) 287, 1053
MnlI CCTC 4 cut(s) 33, 250, 288, 1209
MseI TTAA 3 cut(s) 185, 524, 744
MslI CAYNNNNRTG 2 cut(s) 626, 1170
MspA1I CMGCKG 2 cut(s) 337, 780
MspI CCGG 2 cut(s) 408, 813
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 2 cut(s) 585, 605
MwoI GCNNNNNNNGC 4 cut(s) 334, 413, 786, 835
NdeII GATC 6 cut(s) 54, 213, 975, 1003, 1017, 1107
NlaIII CATG 6 cut(s) 61, 400, 447, 625, 643, 1223
NlaIV GGNNCC 1 cut(s) 724
NmuCI GTSAC 2 cut(s) 727, 1210
NspI RCATGY 1 cut(s) 447
NspV TTCGAA 1 cut(s) 349
PagI TCATGA 2 cut(s) 57, 1219
PaqCI CACCTGC 1 cut(s) 152
PciI ACATGT 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PfeI GAWTC 5 cut(s) 253, 508, 643, 795, 809
PkrI GCNGC 7 cut(s) 306, 363, 584, 751, 779, 782, 997
Ple19I CGATCG 1 cut(s) 1006
PleI GAGTC 3 cut(s) 170, 259, 554
PpsI GAGTC 3 cut(s) 170, 259, 554
PscI ACATGT 1 cut(s) 443
PshBI ATTAAT 1 cut(s) 744
PsiI TTATAA 2 cut(s) 450, 1100
Psp124BI GAGCTC 5 cut(s) 831, 840, 882, 931, 1208
Psp6I CCWGG 1 cut(s) 216
PspEI GGTNACC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 724
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 975
PvuI CGATCG 1 cut(s) 1006
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 1 cut(s) 1040
RsaNI GTAC 1 cut(s) 1039
RseI CAYNNNNRTG 2 cut(s) 626, 1170
SacI GAGCTC 5 cut(s) 831, 840, 882, 931, 1208
SalI GTCGAC 1 cut(s) 1115
SaqAI TTAA 3 cut(s) 185, 524, 744
SatI GCNGC 7 cut(s) 305, 362, 583, 750, 778, 781, 996
Sau3AI GATC 6 cut(s) 54, 213, 975, 1003, 1017, 1107
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 3 cut(s) 170, 259, 554
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 9 cut(s) 117, 230, 633, 831, 840, 882, 931, 1126, 1208
SfaNI GCATC 3 cut(s) 96, 117, 753
SfuI TTCGAA 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 626, 1170
SmlI CTYRAG 3 cut(s) 291, 308, 632
SmoI CTYRAG 3 cut(s) 291, 308, 632
Sse9I AATT 6 cut(s) 258, 521, 686, 800, 842, 1152
SsiI CCGC 9 cut(s) 326, 401, 583, 605, 749, 778, 783, 917, 995
SspMI CTAG 2 cut(s) 668, 767
SstI GAGCTC 5 cut(s) 831, 840, 882, 931, 1208
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 1121
TaiI ACGT 3 cut(s) 203, 572, 621
TaqI TCGA 7 cut(s) 111, 256, 349, 793, 840, 1006, 1116
TaqII GACCGA 1 cut(s) 114
TasI AATT 6 cut(s) 258, 521, 686, 800, 842, 1152
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 4 cut(s) 585, 752, 780, 998
TfiI GAWTC 5 cut(s) 253, 508, 643, 795, 809
Tru1I TTAA 3 cut(s) 185, 524, 744
Tru9I TTAA 3 cut(s) 185, 524, 744
TscAI CASTG 1 cut(s) 122
TseFI GTSAC 2 cut(s) 727, 1210
TseI GCWGC 3 cut(s) 304, 361, 780
Tsp45I GTSAC 2 cut(s) 727, 1210
TspDTI ATGAA 2 cut(s) 424, 534
TspRI CASTG 1 cut(s) 122
VneI GTGCAC 1 cut(s) 226
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 3 cut(s) 258, 686, 1152
XceI RCATGY 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 1116
XspI CTAG 2 cut(s) 668, 767
ZrmI AGTACT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.