Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004027

Physical Location & Seq

Genomic Coordinates Forward (+)

14963952 .. 14965190

Gene Structure 1239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAGGAAGTTGAAATAGAAGTACCTCAGTATTTCATATGTCCCATCTCTCTCCAGATCATGAATGACCCCGTAACGGTGGTAACAGGCATCACTTACGACCGGGAAAGCATCGAGCAGTGGTTCTTGGCAACCAACGACTTGTCGTGCCCAGTCACAAAGCAGGCCTTGCCAAGAGGCGACGACTTGACGCCCAATCACACCCTCCGCAGGCTAATCCAGCAATGGTGCAAAGAAAACGCAACCAACGGGGTTGATTTCATCCCGACCCCAAGACTCCCTCTCGACAAGATCTATCTCACTAGACTAGTTCGGGATCTTGGGGTTTCTCATTTGCAGTTAACTGCACTGAAAAAATTGGAAGCGCTTGTGTTAGAGAACGATGAAAGGAAGAGGTTCTCCATGGCCGAAGCAGGTGTTGCCAAGGCAGTGATTTTGCTCGTCATAAGATGTTTCAGGGGAGGTGAAACAAATGGACTTCTAGAAGCTTTTAGAATTTTGCATCATGTTTGGAATGTGAGTGGTGATCATGAAGTCCAACTTCTTGTTAATGGAAACACCGACTTTCTTGATTCTTTGACATGGGTTTTCAGGTGTGGTCTTGATCAGATGGATAACCATCGCCTTGTGAAAAACGAAGCGATATTGGTATCGAAAATGACAATGGAAGTCCTAAGTCCATGTCTGCTCGAGAGGTTGAACCTTGAATTCTTCAAGAATATTGTCATGGTGTTAAAAGAAAAAATTTCACAGAAAGCTGTCAAATCTGCACTCCACATTTTAATAAATGCATGCCCGTGGGGGAGAAACCGAATTAAAATCGTTGAATCCGGTGCAGTCTTCCACATCATCGAGCTTGAGCTTGCAAAACCTGAAAAGCGTGTAACAGAGCTGATATTCAATCTTTTGGCCAATTTATGTGGCTGTGCTGATGGGAGAGATCAGCTGCTGAAACACGGTGGAGGTATGGCCATGGTGTCTAAAAGAATACTTAGGGTTTCGCCAGCAACAGATGATCGAGCAGTTCATACACTTTCCTCGATCGCGATGTTCTCCGCTACACATAATGTTCTTTCAGAGATGCTGTTGGTTGGAGCAGTGTCAAAACTGTGCATGGTAATGCAATCAGACCGTGAAGCCTATTTAAAGGAAAAGGTTAGAGGGATCTTAAGGTTGCACTCTAATGTGTGGAACAACTCGCCTTGTATTGCTGTATATCTGATAACAAGGCCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

413

Amino Acids

46.55

Weight (kDa)

8.25

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	8 - 80	9.6e-19	U-box domain
ARM_PUB	PF25598	113 - 409	6.1e-56	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11840
fragaria_vesca	FvH4_3g26390 FvH4_6g20390
malus_domestica	MD11G1173500.v1.1 MD12G1040800.v1.1 MD14G1039900.v1.1
prunus_persica	Prupe.6G145200_v2.0.a1 Prupe.6G145200_v2.0.a1 Prupe.7G094100_v2.0.a1
pyrus_communis	pycom11g14800 pycom12g03490 pycom14g03410
rosa_chinensis	RchiOBHm_Chr3g0476021 RchiOBHm_Chr5g0048571
rosa_laevigata	RLG00000023791 RLG00000034535
rosa_multiflora	Rmu_sc0000585.1_g000008 Rmu_sc0007341.1_g000034
rosa_roxburghii	Rroxscaffold_1G00033260 Rroxscaffold_6G00405500
rosa_rugosa	Rorug03G0152800 Rorug05G0239500
rosa_samantha	Rh3AG203700 Rh3BG233600 Rh3CG229000 Rh3DG229100 Rh5AG319200 Rh5BG329600 Rh5CG355500 Rh5DG340800
rosa_wichuraiana	Rw0G021240 Rw3G018510 Rw5G029850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
AccII	CGCG	1 cut(s)	1046
AciI	CCGC	2 cut(s)	208, 1056
AclWI	GGATC	2 cut(s)	324, 1172
AcoI	YGGCCR	3 cut(s)	405, 909, 969
AcsI	RAATTY	3 cut(s)	495, 707, 744
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	24
AfeI	AGCGCT	1 cut(s)	366
AfiI	CCNNNNNNNGG	2 cut(s)	76, 210
AflII	CTTAAG	1 cut(s)	1168
AgsI	TTSAA	6 cut(s)	14, 700, 707, 715, 827, 901
AhlI	ACTAGT	1 cut(s)	307
AluBI	AGCT	6 cut(s)	488, 758, 856, 862, 892, 946
AluI	AGCT	6 cut(s)	488, 758, 856, 862, 892, 946
AlwI	GGATC	2 cut(s)	324, 1172
AlwNI	CAGNNNCTG	1 cut(s)	949
Ama87I	CYCGRG	1 cut(s)	689
Aor51HI	AGCGCT	1 cut(s)	366
AoxI	GGCC	5 cut(s)	165, 405, 909, 969, 1229
ApeKI	GCWGC	1 cut(s)	946
ApoI	RAATTY	3 cut(s)	495, 707, 744
Asp700I	GAANNNNTTC	1 cut(s)	395
AspA2I	CCTAGG	1 cut(s)	1232
AspLEI	GCGC	1 cut(s)	367
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	476, 536
AvaI	CYCGRG	1 cut(s)	689
AvrII	CCTAGG	1 cut(s)	1232
BaeGI	GKGCMC	1 cut(s)	152
BalI	TGGCCA	2 cut(s)	911, 971
BbsI	GAAGAC	1 cut(s)	832
BbvI	GCAGC	1 cut(s)	933
BccI	CCATC	4 cut(s)	53, 604, 627, 926
BclI	TGATCA	2 cut(s)	526, 604
BcnI	CCSGG	1 cut(s)	104
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	4 cut(s)	303, 308, 482, 1233
BfoI	RGCGCY	1 cut(s)	368
BfrI	CTTAAG	1 cut(s)	1168
BfuAI	ACCTGC	1 cut(s)	404
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	1 cut(s)	947
BlnI	CCTAGG	1 cut(s)	1232
BlsI	GCNGC	1 cut(s)	948
Bme1390I	CCNGG	1 cut(s)	104
BmeT110I	CYCGRG	1 cut(s)	689
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	4 cut(s)	99, 120, 511, 1071
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	832
BpmI	CTGGAG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	5 cut(s)	402, 423, 797, 972, 1232
BsaWI	WCCGGW	1 cut(s)	830
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 210
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	618
BseDI	CCNNGG	5 cut(s)	402, 423, 797, 972, 1232
BseGI	GGATG	1 cut(s)	261
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	2 cut(s)	76, 210
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	933
BsgI	GTGCAG	3 cut(s)	330, 753, 855
Bsh1236I	CGCG	1 cut(s)	1046
Bsh1285I	CGRYCG	2 cut(s)	103, 1044
BshFI	GGCC	5 cut(s)	167, 407, 911, 971, 1231
BsiEI	CGRYCG	2 cut(s)	103, 1044
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	2 cut(s)	103, 831
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	76, 210
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	5 cut(s)	167, 407, 911, 971, 1231
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	9 cut(s)	57, 291, 316, 526, 604, 940, 1015, 1041, 1164
Bsp19I	CCATGG	2 cut(s)	402, 972
Bsp68I	TCGCGA	1 cut(s)	1046
BspACI	CCGC	2 cut(s)	208, 1056
BspANI	GGCC	5 cut(s)	167, 407, 911, 971, 1231
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	1046
BspHI	TCATGA	2 cut(s)	60, 529
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	2 cut(s)	324, 1172
BspTI	CTTAAG	1 cut(s)	1168
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	5 cut(s)	402, 423, 797, 972, 1232
BssMI	GATC	9 cut(s)	57, 291, 316, 526, 604, 940, 1015, 1041, 1164
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	4 cut(s)	402, 423, 972, 1232
Bst4CI	ACNGT	4 cut(s)	79, 959, 1110, 1133
Bst6I	CTCTTC	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	191
BstAFI	CTTAAG	1 cut(s)	1168
BstAPI	GCANNNNNTGC	2 cut(s)	169, 419
BstC8I	GCNNGC	5 cut(s)	165, 212, 793, 864, 1005
BstDEI	CTNAG	3 cut(s)	27, 674, 992
BstDSI	CCRYGG	3 cut(s)	402, 797, 972
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	1046
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	9 cut(s)	60, 294, 319, 529, 607, 943, 1018, 1044, 1167
BstMBI	GATC	9 cut(s)	57, 291, 316, 526, 604, 940, 1015, 1041, 1164
BstMCI	CGRYCG	2 cut(s)	103, 1044
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 220, 419
BstNSI	RCATGY	1 cut(s)	795
BstSCI	CCNGG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	152
BstUI	CGCG	1 cut(s)	1046
BstV1I	GCAGC	1 cut(s)	933
BstV2I	GAAGAC	1 cut(s)	832
BstX2I	RGATCY	3 cut(s)	291, 316, 1164
BstYI	RGATCY	3 cut(s)	291, 316, 1164
BsuRI	GGCC	5 cut(s)	167, 407, 911, 971, 1231
BtgI	CCRYGG	3 cut(s)	402, 797, 972
BtgZI	GCGATG	2 cut(s)	605, 1061
BtsCI	GGATG	1 cut(s)	261
BtsI	GCAGTG	3 cut(s)	125, 435, 1104
BtsIMutI	CAGTG	4 cut(s)	125, 347, 435, 1104
BtuMI	TCGCGA	1 cut(s)	1046
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	5 cut(s)	165, 212, 793, 864, 1005
CaiI	CAGNNNCTG	1 cut(s)	949
CciI	TCATGA	2 cut(s)	60, 529
CfoI	GCGC	1 cut(s)	367
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	901, 936
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	3 cut(s)	27, 674, 992
DpnI	GATC	9 cut(s)	59, 293, 318, 528, 606, 942, 1017, 1043, 1166
DpnII	GATC	9 cut(s)	57, 291, 316, 526, 604, 940, 1015, 1041, 1164
DraI	TTTAAA	1 cut(s)	1146
EaeI	YGGCCR	3 cut(s)	405, 909, 969
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco130I	CCWWGG	4 cut(s)	402, 423, 972, 1232
Eco147I	AGGCCT	2 cut(s)	167, 1231
Eco47III	AGCGCT	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	707
EcoT14I	CCWWGG	4 cut(s)	402, 423, 972, 1232
EcoT22I	ATGCAT	1 cut(s)	793
ErhI	CCWWGG	4 cut(s)	402, 423, 972, 1232
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 525, 557
FaqI	GGGAC	1 cut(s)	27
FauNDI	CATATG	1 cut(s)	38
FbaI	TGATCA	2 cut(s)	526, 604
Fnu4HI	GCNGC	1 cut(s)	947
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	947
FspBI	CTAG	4 cut(s)	303, 308, 482, 1233
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	947
GsuI	CTGGAG	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	5 cut(s)	167, 407, 911, 971, 1231
HapII	CCGG	2 cut(s)	103, 831
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	3 cut(s)	276, 572, 827
HpaI	GTTAAC	1 cut(s)	342
HpaII	CCGG	2 cut(s)	103, 831
HphI	GGTGA	2 cut(s)	476, 536
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	4 cut(s)	609, 1078, 1129, 1221
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	1 cut(s)	185
HpyCH4III	ACNGT	4 cut(s)	79, 959, 1110, 1133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 220, 419
HpyF3I	CTNAG	3 cut(s)	27, 674, 992
Hsp92I	GRCGYC	1 cut(s)	191
HspAI	GCGC	1 cut(s)	365
Ksp22I	TGATCA	2 cut(s)	526, 604
KspAI	GTTAAC	1 cut(s)	342
Kzo9I	GATC	9 cut(s)	57, 291, 316, 526, 604, 940, 1015, 1041, 1164
LmnI	GCTCC	1 cut(s)	1094
Lsp1109I	GCAGC	1 cut(s)	933
LweI	GCATC	4 cut(s)	99, 120, 511, 1071
MaeI	CTAG	4 cut(s)	303, 308, 482, 1233
MaeIII	GTNAC	4 cut(s)	73, 82, 154, 883
MalI	GATC	9 cut(s)	59, 293, 318, 528, 606, 942, 1017, 1043, 1166
MboI	GATC	9 cut(s)	57, 291, 316, 526, 604, 940, 1015, 1041, 1164
MboII	GAAGA	3 cut(s)	403, 703, 832
MflI	RGATCY	3 cut(s)	291, 316, 1164
MhlI	GDGCHC	1 cut(s)	152
MlsI	TGGCCA	2 cut(s)	911, 971
MluCI	AATT	6 cut(s)	356, 495, 707, 744, 813, 913
MluNI	TGGCCA	2 cut(s)	911, 971
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	2 cut(s)	562, 1072
Mox20I	TGGCCA	2 cut(s)	911, 971
Mph1103I	ATGCAT	1 cut(s)	793
MroXI	GAANNNNTTC	1 cut(s)	395
MscI	TGGCCA	2 cut(s)	911, 971
MseI	TTAA	7 cut(s)	341, 549, 734, 782, 816, 1145, 1169
MslI	CAYNNNNRTG	3 cut(s)	796, 1118, 1182
Msp20I	TGGCCA	2 cut(s)	911, 971
MspA1I	CMGCKG	1 cut(s)	946
MspCI	CTTAAG	1 cut(s)	1168
MspI	CCGG	2 cut(s)	103, 831
MspR9I	CCNGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	1046
MwoI	GCNNNNNNNGC	3 cut(s)	169, 220, 419
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	2 cut(s)	402, 972
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	9 cut(s)	57, 291, 316, 526, 604, 940, 1015, 1041, 1164
NmuCI	GTSAC	1 cut(s)	154
NruI	TCGCGA	1 cut(s)	1046
NsiI	ATGCAT	1 cut(s)	793
NspI	RCATGY	1 cut(s)	795
PaeI	GCATGC	1 cut(s)	795
PaeR7I	CTCGAG	1 cut(s)	689
PagI	TCATGA	2 cut(s)	60, 529
PaqCI	CACCTGC	1 cut(s)	404
PceI	AGGCCT	2 cut(s)	167, 1231
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	572, 827
PkrI	GCNGC	1 cut(s)	948
Ple19I	CGATCG	1 cut(s)	1044
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	949
PsuI	RGATCY	3 cut(s)	291, 316, 1164
PvuI	CGATCG	1 cut(s)	1044
PvuII	CAGCTG	1 cut(s)	946
RruI	TCGCGA	1 cut(s)	1046
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	3 cut(s)	796, 1118, 1182
SaqAI	TTAA	7 cut(s)	341, 549, 734, 782, 816, 1145, 1169
SatI	GCNGC	1 cut(s)	947
Sau3AI	GATC	9 cut(s)	57, 291, 316, 526, 604, 940, 1015, 1041, 1164
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	152
SfaNI	GCATC	4 cut(s)	99, 120, 511, 1071
Sfr274I	CTCGAG	1 cut(s)	689
SlaI	CTCGAG	1 cut(s)	689
SmiMI	CAYNNNNRTG	3 cut(s)	796, 1118, 1182
SmlI	CTYRAG	3 cut(s)	689, 857, 1168
SmoI	CTYRAG	3 cut(s)	689, 857, 1168
SpeI	ACTAGT	1 cut(s)	307
SphI	GCATGC	1 cut(s)	795
Sse9I	AATT	6 cut(s)	356, 495, 707, 744, 813, 913
SseBI	AGGCCT	2 cut(s)	167, 1231
SsiI	CCGC	2 cut(s)	208, 1056
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	4 cut(s)	303, 308, 482, 1233
StuI	AGGCCT	2 cut(s)	167, 1231
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	4 cut(s)	402, 423, 972, 1232
TaaI	ACNGT	4 cut(s)	79, 959, 1110, 1133
TaqI	TCGA	7 cut(s)	114, 285, 653, 690, 852, 1018, 1040
TasI	AATT	6 cut(s)	356, 495, 707, 744, 813, 913
TfiI	GAWTC	2 cut(s)	572, 827
Tru1I	TTAA	7 cut(s)	341, 549, 734, 782, 816, 1145, 1169
Tru9I	TTAA	7 cut(s)	341, 549, 734, 782, 816, 1145, 1169
TscAI	CASTG	4 cut(s)	125, 354, 435, 1104
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	946
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	6 cut(s)	25, 77, 250, 399, 546, 1016
TspRI	CASTG	4 cut(s)	125, 354, 435, 1104
Vha464I	CTTAAG	1 cut(s)	1168
XapI	RAATTY	3 cut(s)	495, 707, 744
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	795
XhoI	CTCGAG	1 cut(s)	689
XmaJI	CCTAGG	1 cut(s)	1232
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	4 cut(s)	303, 308, 482, 1233
Zsp2I	ATGCAT	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.