AT3G12090

Tetraspanin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009503
Physical Location & Seq
Reverse (-)
3852125 .. 3853866
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12090.1

Sequence Viewer

Length: 849 bp
ATGTACAGATTCAGCAACACAGTTATTGGGGTCTTAAACCTTCTCACCTTACTAGCCTCGATTCCAATCATCGGAACCGCTTTATACAAGGCAAGAAGCAGCACGACATGTGAAAACTTCCTCCAGACGCCGCTACTTGTTATAGGATTCATCATACTCATAGTTTCCCTTGCGGGATTCATAGGAGCCTGCTTCAACGTGGCATGGGCTCTTTGGGTGTACTTAGTGGTCATGATCTTCCTCATCGCTACCCTAATGGGTCTAACGCTATTTGGTCTGGTGGTGACGAGCCAAGGAGGTGGAGTGGAAGTGCCAGGGAGGATTTATAAAGAGTATAGGCTTGGAGACTATCATCCATGGTTGAGAGAGAGAGTTAGGGATCCTGAGTATTGGAACTCCATTAGAAGCTGTATCTTGAGTTCCAAGACTTGTACTAAGATTGAGTCTTGGACTACACTTGATTATTTCCAAAGAGACATGACTTCTGTTCAGTCGGGATGTTGTAAGCCACCGACGGCGTGTACGTACGAAGCTGGAGTAGTGGACGGAGGAGGAGATTGCTTCAGATGGAACAATGGAGTGGAGATGTTATGCTACGAGTGCGATGCTTGCAAGGCTGGTGTTCTCGAAGAGATCCGTCTCGACTGGAGAAAGTTATCGGTTGTCAACATTCTCGTCCTCGTCCTCCTCATCGCGGTCTACGCCGCTGGTTGCTGCGCCTTCCACAACACTCGCCACGCAGCTCATCCTTACCATCCATCTGATGATAACCGCATGACCAGAGTCCGTCCTCGTTGGGACTATTACTGGTGGAGATGGTGGCACGAAAAGAAAGAGCAGCTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0032501 GO:0032502 GO:0035265 GO:0040007 GO:0048589
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

282

Amino Acids

32.26

Weight (kDa)

8.19

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 6 - 240 1.7e-31 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AccI GTMKAC 1 cut(s) 699
AccII CGCG 1 cut(s) 695
AciI CCGC 6 cut(s) 78, 131, 173, 695, 705, 772
AclWI GGATC 3 cut(s) 374, 387, 628
AcuI CTGAAG 1 cut(s) 547
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 5 cut(s) 5, 221, 433, 523, 527
AfiI CCNNNNNNNGG 2 cut(s) 71, 694
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 4 cut(s) 408, 533, 743, 841
AluI AGCT 4 cut(s) 408, 533, 743, 841
Alw26I GTCTC 3 cut(s) 339, 468, 644
AlwI GGATC 3 cut(s) 374, 387, 628
ApeKI GCWGC 4 cut(s) 99, 714, 740, 838
AspLEI GCGC 1 cut(s) 719
AsuHPI GGTGA 2 cut(s) 37, 295
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 211
BbvI GCAGC 3 cut(s) 111, 701, 752
BccI CCATC 4 cut(s) 561, 762, 766, 810
BceAI ACGGC 1 cut(s) 531
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 3 cut(s) 339, 468, 644
BfaI CTAG 1 cut(s) 53
BisI GCNGC 6 cut(s) 100, 131, 705, 715, 741, 839
BlsI GCNGC 6 cut(s) 101, 132, 706, 716, 742, 840
Bme1390I CCNGG 1 cut(s) 315
BmiI GGNNCC 3 cut(s) 76, 187, 381
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 595
BoxI GACNNNNGTC 1 cut(s) 782
BpmI CTGGAG 3 cut(s) 107, 555, 667
BpuEI CTTGAG 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 525
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 292, 314, 356
BsaXI ACNNNNNCTCC 4 cut(s) 288, 294, 318, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 694
Bse1I ACTGG 2 cut(s) 650, 812
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 292, 314, 356
BseGI GGATG 4 cut(s) 352, 503, 745, 754
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 71, 694
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 650, 812
BseRI GAGGAG 3 cut(s) 564, 567, 677
BseXI GCAGC 3 cut(s) 111, 701, 752
Bsh1236I CGCG 1 cut(s) 695
BsiWI CGTACG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 812
BslI CCNNNNNNNGG 2 cut(s) 71, 694
BsmAI GTCTC 3 cut(s) 339, 468, 644
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 812
Bsp1286I GDGCHC 1 cut(s) 211
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 234, 379, 633
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 6 cut(s) 78, 131, 173, 695, 705, 772
BspCNI CTCAG 1 cut(s) 376
BspFNI CGCG 1 cut(s) 695
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 76, 187, 381
BspPI GGATC 3 cut(s) 374, 387, 628
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 650, 812
BssECI CCNNGG 3 cut(s) 292, 314, 356
BssMI GATC 3 cut(s) 234, 379, 633
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 292, 356
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 624
BstACI GRCGYC 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 190, 610
BstDEI CTNAG 3 cut(s) 223, 384, 435
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 4 cut(s) 352, 503, 745, 754
BstFNI CGCG 1 cut(s) 695
BstHHI GCGC 1 cut(s) 719
BstKTI GATC 3 cut(s) 237, 382, 636
BstMAI GTCTC 3 cut(s) 339, 468, 644
BstMBI GATC 3 cut(s) 234, 379, 633
BstMWI GCNNNNNNNGC 4 cut(s) 600, 609, 614, 701
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 111
BstPAI GACNNNNGTC 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 313
BstSNI TACGTA 1 cut(s) 525
BstUI CGCG 1 cut(s) 695
BstV1I GCAGC 3 cut(s) 111, 701, 752
BstX2I RGATCY 2 cut(s) 379, 633
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 2 cut(s) 379, 633
BtgI CCRYGG 1 cut(s) 356
BtgZI GCGATG 3 cut(s) 229, 618, 676
BtsCI GGATG 4 cut(s) 352, 503, 745, 754
Cac8I GCNNGC 2 cut(s) 190, 610
CciI TCATGA 1 cut(s) 231
CfoI GCGC 1 cut(s) 719
CseI GACGC 1 cut(s) 136
Csp6I GTAC 5 cut(s) 4, 220, 432, 522, 526
CviAII CATG 6 cut(s) 108, 204, 232, 357, 478, 775
CviQI GTAC 5 cut(s) 4, 220, 432, 522, 526
DdeI CTNAG 3 cut(s) 223, 384, 435
DpnI GATC 3 cut(s) 236, 381, 635
DpnII GATC 3 cut(s) 234, 379, 633
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco105I TACGTA 1 cut(s) 525
Eco130I CCWWGG 2 cut(s) 292, 356
Eco24I GRGCYC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 292, 356
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 2 cut(s) 292, 356
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 6 cut(s) 111, 207, 235, 360, 481, 778
FalI AAGNNNNNCTT 1 cut(s) 825
FaqI GGGAC 1 cut(s) 812
FatI CATG 6 cut(s) 107, 203, 231, 356, 477, 774
FauI CCCGC 1 cut(s) 166
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 6 cut(s) 100, 131, 705, 715, 741, 839
FokI GGATG 4 cut(s) 339, 510, 732, 741
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 6 cut(s) 100, 131, 705, 715, 741, 839
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 718
GluI GCNGC 6 cut(s) 100, 131, 705, 715, 741, 839
GsuI CTGGAG 3 cut(s) 107, 555, 667
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 719
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 6 cut(s) 111, 207, 235, 360, 481, 778
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 6 cut(s) 9, 61, 147, 177, 443, 783
HphI GGTGA 2 cut(s) 37, 295
Hpy166II GTNNAC 5 cut(s) 220, 522, 544, 667, 700
Hpy188I TCNGA 3 cut(s) 74, 566, 763
Hpy188III TCNNGA 7 cut(s) 124, 232, 383, 415, 495, 626, 641
Hpy8I GTNNAC 5 cut(s) 220, 522, 544, 667, 700
Hpy99I CGWCG 1 cut(s) 517
HpyAV CCTTC 2 cut(s) 50, 730
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 2 cut(s) 198, 524
HpyCH4V TGCA 1 cut(s) 612
HpyF10VI GCNNNNNNNGC 4 cut(s) 600, 609, 614, 701
HpyF3I CTNAG 3 cut(s) 223, 384, 435
HpySE526I ACGT 2 cut(s) 198, 524
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 6 cut(s) 111, 207, 235, 360, 481, 778
HspAI GCGC 1 cut(s) 717
Kzo9I GATC 3 cut(s) 234, 379, 633
LmnI GCTCC 1 cut(s) 185
Lsp1109I GCAGC 3 cut(s) 111, 701, 752
LweI GCATC 1 cut(s) 595
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 198, 524
MaeIII GTNAC 1 cut(s) 283
MalI GATC 3 cut(s) 236, 381, 635
MboI GATC 3 cut(s) 234, 379, 633
MboII GAAGA 2 cut(s) 229, 641
MflI RGATCY 2 cut(s) 379, 633
MhlI GDGCHC 1 cut(s) 211
MlyI GAGTC 2 cut(s) 452, 792
MseI TTAA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 707
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 695
MwoI GCNNNNNNNGC 4 cut(s) 600, 609, 614, 701
NcoI CCATGG 1 cut(s) 356
NdeII GATC 3 cut(s) 234, 379, 633
NlaIII CATG 6 cut(s) 111, 207, 235, 360, 481, 778
NlaIV GGNNCC 3 cut(s) 76, 187, 381
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 111
PagI TCATGA 1 cut(s) 231
PciI ACATGT 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PfeI GAWTC 4 cut(s) 9, 61, 147, 177
Pfl23II CGTACG 1 cut(s) 525
PkrI GCNGC 6 cut(s) 101, 132, 706, 716, 742, 840
PleI GAGTC 2 cut(s) 451, 791
PpsI GAGTC 2 cut(s) 451, 791
Ppu21I YACGTR 1 cut(s) 525
PscI ACATGT 1 cut(s) 107
PshAI GACNNNNGTC 1 cut(s) 782
PsiI TTATAA 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspLI CGTACG 1 cut(s) 525
PspN4I GGNNCC 3 cut(s) 76, 187, 381
PsrI GAACNNNNNNTAC 2 cut(s) 403, 435
PsuI RGATCY 2 cut(s) 379, 633
RsaI GTAC 5 cut(s) 5, 221, 433, 523, 527
RsaNI GTAC 5 cut(s) 4, 220, 432, 522, 526
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 6 cut(s) 100, 131, 705, 715, 741, 839
Sau3AI GATC 3 cut(s) 234, 379, 633
SchI GAGTC 2 cut(s) 452, 792
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 211
SetI ASST 9 cut(s) 42, 50, 201, 301, 410, 527, 535, 745, 843
SfaNI GCATC 1 cut(s) 595
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
SnaBI TACGTA 1 cut(s) 525
SsiI CCGC 6 cut(s) 78, 131, 173, 695, 705, 772
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 2 cut(s) 292, 356
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 2 cut(s) 201, 527
TaqI TCGA 3 cut(s) 59, 627, 642
TatI WGTACW 3 cut(s) 3, 219, 431
TauI GCSGC 2 cut(s) 133, 707
TfiI GAWTC 4 cut(s) 9, 61, 147, 177
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 4 cut(s) 99, 714, 740, 838
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 139, 169
TspGWI ACGGA 3 cut(s) 561, 626, 776
XceI RCATGY 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.