Rorug01G0309100

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009503
Physical Location & Seq
Forward (+)
42549283 .. 42553120
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0309100.1

Sequence Viewer

Length: 801 bp
ATGTCATTATCACGGGTTTGTAGAAGAGCCGTTCCCCTGTTCAAGAGCGCACAGCATTTACCTCTTGAGTCTAGATGCATACCCAATTATAATTTAAATGGCGGTAGTACTGTATACCAGAGGCATTTTGGCCATGATAATAGGTGGCGCCCCAAGTTAAGCTCATTTAACAAATGTGGTCAGCATCAACCCTTTGCTGCTCAATCTCTGTTGAGAATCCAGCGACTCTATTCTACTCAGGCTTCCACACAAGAGAAATCACGCAAGATGCTAGTGTACCTTACGGGTTTGGTTTTTGCAATGGTTGCAGCCAGTTATGCAGCAGTTCCTCTCTACAGAAGATTCTGCCAAGCTACTGGGTATGGTGGCACTATCCAACGCCGTGAGAGTGTTGAACAGAAGATTGCCCGACATGCTAAGGACGGCACGGTCACCACAAGAGAGATTGTGGTGCAATTCAATGCTGATGTGGCCGATGGAATGCAATGGAAGTTCACACCTACCCAAAGAGAGGTAAGGGTCAAACCTGGTGAAAGTGCACTTGCTTTTTATACCGCTGAAAATCGAAGTTCAACTCCAATAGTTGGTGTCTCTACATACAATGTTACCCCAATGAAGGCTGCAGTTTACTTCAATAAAATACAGTGCTTTTGCTTTGAGGAACAGCGCCTTCTTCCTGGGGAGCAGATTGATATGCCTGTGTTCTTTTATATCGACCCTGAGTTTGAAACAGATCCGAGAATGGATGGTATCAATAACATAATTTTGTCCTATACCTTTTTCAAAGTTTCGGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

266

Amino Acids

30.4

Weight (kDa)

9.39

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CtaG_Cox11 PF04442 108 - 262 5.1e-61 Cytochrome c oxidase assembly protein CtaG/Cox11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AasI GACNNNNNNGTC 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 584
AccI GTMKAC 1 cut(s) 114
AciI CCGC 2 cut(s) 102, 555
AclWI GGATC 1 cut(s) 728
AcoI YGGCCR 2 cut(s) 130, 471
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 2 cut(s) 109, 278
AfiI CCNNNNNNNGG 3 cut(s) 511, 584, 616
AgsI TTSAA 7 cut(s) 43, 395, 460, 573, 634, 728, 784
AjnI CCWGG 2 cut(s) 526, 676
AluBI AGCT 2 cut(s) 162, 353
AluI AGCT 2 cut(s) 162, 353
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 595
Alw44I GTGCAC 1 cut(s) 537
AlwI GGATC 1 cut(s) 728
AoxI GGCC 2 cut(s) 130, 471
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 4 cut(s) 197, 308, 320, 620
ArsI GACNNNNNNTTYG 2 cut(s) 707, 739
AspLEI GCGC 3 cut(s) 50, 150, 669
AsuHPI GGTGA 2 cut(s) 424, 542
BaeGI GKGCMC 1 cut(s) 541
BalI TGGCCA 1 cut(s) 132
BanI GGYRCC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 4 cut(s) 184, 320, 332, 607
BccI CCATC 2 cut(s) 470, 740
BceAI ACGGC 3 cut(s) 14, 366, 439
BciT130I CCWGG 2 cut(s) 528, 678
BcoDI GTCTC 1 cut(s) 595
BfaI CTAG 2 cut(s) 72, 272
BfmI CTRYAG 2 cut(s) 334, 621
BfoI RGCGCY 2 cut(s) 151, 670
BisI GCNGC 4 cut(s) 198, 309, 321, 621
BlsI GCNGC 4 cut(s) 199, 310, 322, 622
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 2 cut(s) 528, 678
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 2 cut(s) 528, 678
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 3 cut(s) 65, 193, 258
BmuI ACTGGG 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 677
Bsc4I CCNNNNNNNGG 3 cut(s) 511, 584, 616
Bse1I ACTGG 2 cut(s) 312, 361
Bse3DI GCAATG 2 cut(s) 306, 491
BseBI CCWGG 2 cut(s) 528, 678
BseDI CCNNGG 1 cut(s) 677
BseGI GGATG 1 cut(s) 751
BseLI CCNNNNNNNGG 3 cut(s) 511, 584, 616
BseMI GCAATG 2 cut(s) 306, 491
BseMII CTCAG 2 cut(s) 251, 711
BseNI ACTGG 2 cut(s) 312, 361
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 4 cut(s) 184, 320, 332, 607
BshFI GGCC 2 cut(s) 132, 473
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 541
BslI CCNNNNNNNGG 3 cut(s) 511, 584, 616
BsmAI GTCTC 1 cut(s) 595
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 2 cut(s) 132, 473
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 1 cut(s) 733
BspACI CCGC 2 cut(s) 102, 555
BspANI GGCC 2 cut(s) 132, 473
BspCNI CTCAG 2 cut(s) 250, 712
BspLI GGNNCC 1 cut(s) 149
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 1 cut(s) 728
BspQI GCTCTTC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 147
BsrDI GCAATG 2 cut(s) 306, 491
BsrI ACTGG 2 cut(s) 312, 361
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 1 cut(s) 733
BssNAI GTATAC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 148
Bst1107I GTATAC 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 528, 678
Bst4CI ACNGT 3 cut(s) 112, 430, 645
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 148
BstAPI GCANNNNNTGC 1 cut(s) 305
BstDEI CTNAG 3 cut(s) 237, 417, 720
BstEII GGTNACC 1 cut(s) 430
BstF5I GGATG 1 cut(s) 751
BstH2I RGCGCY 2 cut(s) 151, 670
BstHHI GCGC 3 cut(s) 50, 150, 669
BstKTI GATC 1 cut(s) 736
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 1 cut(s) 733
BstMWI GCNNNNNNNGC 4 cut(s) 305, 317, 413, 470
BstNI CCWGG 2 cut(s) 528, 678
BstNSI RCATGY 1 cut(s) 416
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 526, 676
BstSFI CTRYAG 2 cut(s) 334, 621
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 184, 320, 332, 607
BstX2I RGATCY 1 cut(s) 733
BstXI CCANNNNNNTGG 1 cut(s) 356
BstYI RGATCY 1 cut(s) 733
BstZ17I GTATAC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 132, 473
BtsCI GGATG 1 cut(s) 751
BtsIMutI CAGTG 1 cut(s) 650
CfoI GCGC 3 cut(s) 50, 150, 669
CsiI ACCWGGT 1 cut(s) 526
Csp6I GTAC 2 cut(s) 108, 277
CviAII CATG 2 cut(s) 134, 413
CviJI RGCY 8 cut(s) 29, 132, 162, 242, 311, 353, 473, 620
CviKI_1 RGCY 8 cut(s) 29, 132, 162, 242, 311, 353, 473, 620
CviQI GTAC 2 cut(s) 108, 277
DdeI CTNAG 3 cut(s) 237, 417, 720
DinI GGCGCC 1 cut(s) 149
DpnI GATC 1 cut(s) 735
DpnII GATC 1 cut(s) 733
DraI TTTAAA 1 cut(s) 96
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
EaeI YGGCCR 2 cut(s) 130, 471
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco91I GGTNACC 1 cut(s) 430
EcoO65I GGTNACC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 526, 676
EcoT22I ATGCAT 1 cut(s) 80
EgeI GGCGCC 1 cut(s) 149
EheI GGCGCC 1 cut(s) 149
FaeI CATG 2 cut(s) 137, 416
FatI CATG 2 cut(s) 133, 412
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 198, 309, 321, 621
FokI GGATG 1 cut(s) 758
Fsp4HI GCNGC 4 cut(s) 198, 309, 321, 621
FspBI CTAG 2 cut(s) 72, 272
GlaI GCGC 3 cut(s) 49, 149, 668
GluI GCNGC 4 cut(s) 198, 309, 321, 621
HaeII RGCGCY 2 cut(s) 151, 670
HaeIII GGCC 2 cut(s) 132, 473
HhaI GCGC 3 cut(s) 50, 150, 669
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 2 cut(s) 137, 416
Hin6I GCGC 3 cut(s) 48, 148, 667
HinP1I GCGC 3 cut(s) 48, 148, 667
HinfI GANTC 4 cut(s) 68, 216, 225, 342
HphI GGTGA 2 cut(s) 424, 542
Hpy166II GTNNAC 5 cut(s) 115, 277, 495, 539, 628
Hpy188I TCNGA 2 cut(s) 738, 793
Hpy188III TCNNGA 3 cut(s) 43, 65, 72
Hpy8I GTNNAC 5 cut(s) 115, 277, 495, 539, 628
HpyAV CCTTC 2 cut(s) 610, 680
HpyCH4III ACNGT 3 cut(s) 112, 430, 645
HpyCH4V TGCA 8 cut(s) 78, 299, 308, 320, 454, 484, 539, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 305, 317, 413, 470
HpyF3I CTNAG 3 cut(s) 237, 417, 720
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 2 cut(s) 137, 416
HspAI GCGC 3 cut(s) 48, 148, 667
KasI GGCGCC 1 cut(s) 147
Kzo9I GATC 1 cut(s) 733
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 682
Lsp1109I GCAGC 4 cut(s) 184, 320, 332, 607
LweI GCATC 3 cut(s) 65, 193, 258
MabI ACCWGGT 1 cut(s) 526
MaeI CTAG 2 cut(s) 72, 272
MaeIII GTNAC 2 cut(s) 430, 604
MalI GATC 1 cut(s) 735
MboI GATC 1 cut(s) 733
MboII GAAGA 4 cut(s) 36, 351, 412, 665
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 1 cut(s) 541
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 4 cut(s) 85, 91, 455, 762
MluNI TGGCCA 1 cut(s) 132
Mly113I GGCGCC 1 cut(s) 148
MlyI GAGTC 2 cut(s) 77, 219
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 6 cut(s) 72, 114, 339, 505, 652, 787
Mox20I TGGCCA 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 80
MscI TGGCCA 1 cut(s) 132
MseI TTAA 3 cut(s) 95, 158, 168
Msp20I TGGCCA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 557
MspR9I CCNGG 2 cut(s) 528, 678
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 2 cut(s) 528, 678
MwoI GCNNNNNNNGC 4 cut(s) 305, 317, 413, 470
NarI GGCGCC 1 cut(s) 148
NdeII GATC 1 cut(s) 733
NlaIII CATG 2 cut(s) 137, 416
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 19
PctI GAATGC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 216, 342
PflMI CCANNNNNTGG 1 cut(s) 584
PkrI GCNGC 4 cut(s) 199, 310, 322, 622
PleI GAGTC 2 cut(s) 76, 219
PluTI GGCGCC 1 cut(s) 151
PpsI GAGTC 2 cut(s) 76, 219
PsiI TTATAA 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 526, 676
PspEI GGTNACC 1 cut(s) 430
PspGI CCWGG 2 cut(s) 526, 676
PspN4I GGNNCC 1 cut(s) 149
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 1 cut(s) 733
RsaI GTAC 2 cut(s) 109, 278
RsaNI GTAC 2 cut(s) 108, 277
SapI GCTCTTC 1 cut(s) 19
SaqAI TTAA 3 cut(s) 95, 158, 168
SatI GCNGC 4 cut(s) 198, 309, 321, 621
Sau3AI GATC 1 cut(s) 733
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 2 cut(s) 77, 219
ScrFI CCNGG 2 cut(s) 528, 678
SduI GDGCHC 1 cut(s) 541
SetI ASST 9 cut(s) 64, 146, 164, 282, 355, 502, 516, 529, 779
SexAI ACCWGGT 1 cut(s) 526
SfaNI GCATC 3 cut(s) 65, 193, 258
SfcI CTRYAG 2 cut(s) 334, 621
SfoI GGCGCC 1 cut(s) 149
SmiI ATTTAAAT 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 4 cut(s) 85, 91, 455, 762
SsiI CCGC 2 cut(s) 102, 555
SspDI GGCGCC 1 cut(s) 147
SspMI CTAG 2 cut(s) 72, 272
StyD4I CCNGG 2 cut(s) 526, 676
SwaI ATTTAAAT 1 cut(s) 96
TaaI ACNGT 3 cut(s) 112, 430, 645
TaqI TCGA 2 cut(s) 565, 714
TasI AATT 4 cut(s) 85, 91, 455, 762
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 2 cut(s) 216, 342
Tru1I TTAA 3 cut(s) 95, 158, 168
Tru9I TTAA 3 cut(s) 95, 158, 168
TscAI CASTG 1 cut(s) 650
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 4 cut(s) 197, 308, 320, 620
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 1 cut(s) 629
TspRI CASTG 1 cut(s) 650
Van91I CCANNNNNTGG 1 cut(s) 584
VneI GTGCAC 1 cut(s) 537
XbaI TCTAGA 1 cut(s) 71
XceI RCATGY 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 72, 272
ZrmI AGTACT 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.