Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009503

Physical Location & Seq

Genomic Coordinates Reverse (-)

14153326 .. 14155519

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTACTGGCTCAGTAACACAGTGATAGGTTTCTTGAACCTCGTCACTCTCTTAGCATCAATTCCGATAATCGCTGCAGGTCTATGGATGTCAAGGAGCAGCACCACATGTGAAACTTTCCTCCAAACTCCACTTTTGGTGGTAGGTTTTGTGGTGCTCGTGGTATCCCTAGCTGGGTTCATTGGTGCCTGCTTCCATGTGGTATGGGCACTCTGGGTGTACTTGGCGGTGATGCTGCTGCTGATTGCAACCCTAATCGGTTTGACAGTGTTTGGGTTTGCGGTTACAAGCAAAGGTGCTGGAGTGGAGGTGCCTGGTAGGGTTTATAAGGAATACCACCTTGAGGATTACTCACCATGGTTGAGGAATAGGATTAAGGATCCTAATTATTGGAGTAAGATTAGGAGTTGCATCATGGGGTCTAAAACTTGTGCTAAGATTGTTGCTTGGACACCTACCGATTATCTTCAAAGGGACATGTCTCCAATACAGTCTGGTTGTTGCAAGCCTCCAACTTCATGTAATTACGACATGGCAACCACAGTGACTCAAGACCAAGATTGCTACCGTTGGAACAATGCGCCCAATTTATTATGCTATGAGTGTGATTCATGCAAAGCTGGAGTTCTTGAAGATATCAAAAGGGACTGGCACAAGATCTCTGTCCTCACCATTGTCATGGTGGTTGTTCTCATTGGAGTATATTCAATTGGTTGCTGTGCTTTCCGCAACGCAGAACGAGCTGAAACGGATTATCCATATGGTCATAACAGGATGAGTAAAATCCGCCCCCGATGGGACTACCATTGGTGGAGAAACTGGCATCACAGAAGAGAGCAGCTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

283

Amino Acids

32.3

Weight (kDa)

8.64

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12090
fragaria_vesca	FvH4_7g19800 FvH4_7g19800 FvH4_7g19830
malus_domestica	MD01G1110500.v1.1 MD07G1176400.v1.1
prunus_persica	Prupe.2G215300_v2.0.a1
pyrus_communis	pycom01g13770 pycom07g17060
rosa_chinensis	RchiOBHm_Chr1g0363771 RchiOBHm_Chr1g0363801
rosa_laevigata	RLG00000027548
rosa_multiflora	Rmu_sc0000548.1_g000025
rosa_roxburghii	Rroxscaffold_4G00292960
rosa_rugosa	Rorug01G0309000 Rorug01G0309100 Rorug01G0309200
rosa_samantha	Rh1AG317900 Rh1BG281200 Rh1CG297500 Rh1DG312500
rosa_wichuraiana	Rw1G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	68
AccB1I	GGYRCC	2 cut(s)	185, 310
AciI	CCGC	4 cut(s)	227, 281, 727, 787
AclWI	GGATC	2 cut(s)	374, 387
AfaI	GTAC	2 cut(s)	5, 221
AfiI	CCNNNNNNNGG	3 cut(s)	174, 343, 796
AflIII	ACRYGT	2 cut(s)	107, 477
AgsI	TTSAA	4 cut(s)	37, 470, 632, 708
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	4 cut(s)	173, 620, 743, 841
AluI	AGCT	4 cut(s)	173, 620, 743, 841
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	2 cut(s)	374, 387
ApeKI	GCWGC	5 cut(s)	74, 99, 235, 238, 838
AspLEI	GCGC	1 cut(s)	583
AsuHPI	GGTGA	3 cut(s)	241, 345, 661
BaeGI	GKGCMC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	2 cut(s)	185, 310
BauI	CACGAG	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	4 cut(s)	61, 111, 222, 225
BccI	CCATC	1 cut(s)	789
BciT130I	CCWGG	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	657
BisI	GCNGC	5 cut(s)	75, 100, 236, 239, 839
BlsI	GCNGC	5 cut(s)	76, 101, 237, 240, 840
Bme1390I	CCNGG	1 cut(s)	315
BmiI	GGNNCC	3 cut(s)	187, 312, 381
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	4 cut(s)	65, 222, 420, 832
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	2 cut(s)	321, 642
BpuEI	CTTGAG	2 cut(s)	362, 534
BsaJI	CCNNGG	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 343, 796
Bse1I	ACTGG	3 cut(s)	11, 653, 824
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	93, 780
BseLI	CCNNNNNNNGG	3 cut(s)	174, 343, 796
BseMII	CTCAG	1 cut(s)	25
BseNI	ACTGG	3 cut(s)	11, 653, 824
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	4 cut(s)	61, 111, 222, 225
BseYI	CCCAGC	1 cut(s)	173
BshNI	GGYRCC	2 cut(s)	185, 310
BsiHKAI	GWGCWC	1 cut(s)	159
BslFI	GGGAC	3 cut(s)	488, 659, 812
BslI	CCNNNNNNNGG	3 cut(s)	174, 343, 796
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	3 cut(s)	488, 659, 812
Bsp1286I	GDGCHC	2 cut(s)	159, 211
Bsp143I	GATC	2 cut(s)	379, 657
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	4 cut(s)	227, 281, 727, 787
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	187, 312, 381
BspMAI	CTGCAG	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	374, 387
BspT107I	GGYRCC	2 cut(s)	185, 310
BsrI	ACTGG	3 cut(s)	11, 653, 824
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	2 cut(s)	379, 657
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	356
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	5 cut(s)	22, 268, 492, 544, 569
Bst6I	CTCTTC	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	190, 506
BstDEI	CTNAG	3 cut(s)	11, 52, 435
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	93, 780
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	2 cut(s)	382, 660
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	2 cut(s)	379, 657
BstMWI	GCNNNNNNNGC	1 cut(s)	740
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	2 cut(s)	111, 481
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	4 cut(s)	61, 111, 222, 225
BstX2I	RGATCY	2 cut(s)	379, 657
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	2 cut(s)	379, 657
BsuI	GTATCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	93, 780
BtsIMutI	CAGTG	3 cut(s)	27, 273, 549
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	190, 506
CfoI	GCGC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	4, 220
CviAII	CATG	9 cut(s)	108, 197, 357, 415, 478, 519, 532, 612, 679
CviJI	RGCY	6 cut(s)	10, 173, 508, 620, 743, 841
CviKI_1	RGCY	6 cut(s)	10, 173, 508, 620, 743, 841
CviQI	GTAC	2 cut(s)	4, 220
DdeI	CTNAG	3 cut(s)	11, 52, 435
DpnI	GATC	2 cut(s)	381, 659
DpnII	GATC	2 cut(s)	379, 657
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
EciI	GGCGGA	1 cut(s)	776
Eco130I	CCWWGG	1 cut(s)	356
Eco32I	GATATC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	9 cut(s)	111, 200, 360, 418, 481, 522, 535, 615, 682
FaqI	GGGAC	3 cut(s)	488, 659, 812
FatI	CATG	9 cut(s)	107, 196, 356, 414, 477, 518, 531, 611, 678
FauNDI	CATATG	1 cut(s)	760
Fnu4HI	GCNGC	5 cut(s)	75, 100, 236, 239, 839
FokI	GGATG	2 cut(s)	100, 787
Fsp4HI	GCNGC	5 cut(s)	75, 100, 236, 239, 839
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	5 cut(s)	75, 100, 236, 239, 839
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	2 cut(s)	321, 642
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	9 cut(s)	111, 200, 360, 418, 481, 522, 535, 615, 682
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	2 cut(s)	547, 608
HphI	GGTGA	3 cut(s)	241, 345, 661
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	3 cut(s)	34, 551, 629
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4III	ACNGT	5 cut(s)	22, 268, 492, 544, 569
HpyCH4V	TGCA	5 cut(s)	77, 248, 411, 504, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	740
HpyF3I	CTNAG	3 cut(s)	11, 52, 435
Hsp92II	CATG	9 cut(s)	111, 200, 360, 418, 481, 522, 535, 615, 682
HspAI	GCGC	1 cut(s)	581
Kzo9I	GATC	2 cut(s)	379, 657
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	4 cut(s)	61, 111, 222, 225
LweI	GCATC	4 cut(s)	65, 222, 420, 832
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	4 cut(s)	14, 43, 283, 544
MalI	GATC	2 cut(s)	381, 659
MboI	GATC	2 cut(s)	379, 657
MboII	GAAGA	3 cut(s)	458, 644, 843
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	2 cut(s)	379, 657
MhlI	GDGCHC	2 cut(s)	159, 211
MluCI	AATT	5 cut(s)	60, 385, 523, 586, 708
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	536, 551
MnlI	CCTC	7 cut(s)	50, 131, 301, 337, 357, 519, 677
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	677
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	740
NcoI	CCATGG	1 cut(s)	356
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	2 cut(s)	379, 657
NlaIII	CATG	9 cut(s)	111, 200, 360, 418, 481, 522, 535, 615, 682
NlaIV	GGNNCC	3 cut(s)	187, 312, 381
NmuCI	GTSAC	2 cut(s)	43, 544
NspI	RCATGY	2 cut(s)	111, 481
PciI	ACATGT	2 cut(s)	107, 477
PfeI	GAWTC	1 cut(s)	608
PkrI	GCNGC	5 cut(s)	76, 101, 237, 240, 840
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PscI	ACATGT	2 cut(s)	107, 477
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	3 cut(s)	187, 312, 381
PstI	CTGCAG	1 cut(s)	79
PsuI	RGATCY	2 cut(s)	379, 657
RsaI	GTAC	2 cut(s)	5, 221
RsaNI	GTAC	2 cut(s)	4, 220
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	5 cut(s)	75, 100, 236, 239, 839
Sau3AI	GATC	2 cut(s)	379, 657
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	159, 211
SfaNI	GCATC	4 cut(s)	65, 222, 420, 832
SfcI	CTRYAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	2 cut(s)	341, 549
SmoI	CTYRAG	2 cut(s)	341, 549
Sse9I	AATT	5 cut(s)	60, 385, 523, 586, 708
SsiI	CCGC	4 cut(s)	227, 281, 727, 787
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	5 cut(s)	22, 268, 492, 544, 569
TasI	AATT	5 cut(s)	60, 385, 523, 586, 708
TatI	WGTACW	2 cut(s)	3, 219
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	3 cut(s)	27, 273, 549
TseFI	GTSAC	2 cut(s)	43, 544
TseI	GCWGC	5 cut(s)	74, 99, 235, 238, 838
Tsp45I	GTSAC	2 cut(s)	43, 544
TspDTI	ATGAA	3 cut(s)	169, 507, 600
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	3 cut(s)	27, 273, 549
XceI	RCATGY	2 cut(s)	111, 481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.