Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000548.1

Orthogroup ID

OG0009503

Physical Location & Seq

Genomic Coordinates Reverse (-)

124899 .. 126092

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000548.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgtataggttgagcaacacagtgattgggttcttgaacctcttcactcttttagcatcaatacctattattggtggtggtctatggatggcaaggagcagcacaacatgtgaaagtttcctccaaaccccactcttagtgattggttttgttgtgctaatcatatctctggctgggttcattggtgcttgtttccatgtcgcttgggcgctttgggtgtacttagtagtcatgctgttccttattgcaaccctgatggggttgactgtgtttgggtttgtggttacaagtcaaggtgctggagttgatgtgcctggtagggcatataaggaataccatctcgaggattactcaccatggttgaggaagaggattaaggaccccaattactggagcaacattaggagttgtattttggggtctaagacttgtgcaaagcttcttctttggactcctctcgattatcttgagagggatatgtctccaatacagtctggttgttgcaagccaccaacagcatgcaactacaacatggcaacaacagtgagtcaagacccagattgctaccggtggaacaatgccccgaatatgttatgctacgagtgtgattcatgcaaggcaggagtgcttgaaaatatcaagagggactggcacaagctctctgttctcaacattgtgatgcttgttgtcctcattggaatatattccattggatgctgtgctttccaaaacacaaaaagagctgaaaccggttacccctatggccagaaccggatgtctacagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

262

Amino Acids

29.32

Weight (kDa)

8.53

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12090
fragaria_vesca	FvH4_7g19800 FvH4_7g19800 FvH4_7g19830
malus_domestica	MD01G1110500.v1.1 MD07G1176400.v1.1
prunus_persica	Prupe.2G215300_v2.0.a1
pyrus_communis	pycom01g13770 pycom07g17060
rosa_chinensis	RchiOBHm_Chr1g0363771 RchiOBHm_Chr1g0363801
rosa_laevigata	RLG00000027548
rosa_multiflora	Rmu_sc0000548.1_g000025
rosa_roxburghii	Rroxscaffold_4G00292960
rosa_rugosa	Rorug01G0309000 Rorug01G0309100 Rorug01G0309200
rosa_samantha	Rh1AG317900 Rh1BG281200 Rh1CG297500 Rh1DG312500
rosa_wichuraiana	Rw1G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	390
AccI	GTMKAC	1 cut(s)	779
AcoI	YGGCCR	1 cut(s)	763
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	4 cut(s)	71, 258, 343, 390
AflIII	ACRYGT	1 cut(s)	107
AgeI	ACCGGT	2 cut(s)	567, 749
AgsI	TTSAA	2 cut(s)	37, 632
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	3 cut(s)	439, 658, 743
AluI	AGCT	3 cut(s)	439, 658, 743
Alw26I	GTCTC	1 cut(s)	486
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	763
ApeKI	GCWGC	1 cut(s)	99
AsiGI	ACCGGT	2 cut(s)	567, 749
Asp700I	GAANNNNTTC	2 cut(s)	41, 703
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	345
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	765
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	3 cut(s)	82, 250, 345
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	780
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	3 cut(s)	65, 669, 704
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	2 cut(s)	321, 412
BpuEI	CTTGAG	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	356
BsaWI	WCCGGW	3 cut(s)	567, 749, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 258, 343, 390
Bse118I	RCCGGY	2 cut(s)	567, 749
Bse1I	ACTGG	2 cut(s)	395, 653
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	3 cut(s)	93, 719, 780
BseLI	CCNNNNNNNGG	4 cut(s)	71, 258, 343, 390
BseNI	ACTGG	2 cut(s)	395, 653
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	765
BshTI	ACCGGT	2 cut(s)	567, 749
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	3 cut(s)	568, 750, 772
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	4 cut(s)	71, 258, 343, 390
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	1 cut(s)	765
BsoBI	CYCGRG	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	356
BspANI	GGCC	1 cut(s)	765
BspLI	GGNNCC	1 cut(s)	381
BsrFI	RCCGGY	2 cut(s)	567, 749
BsrI	ACTGG	2 cut(s)	395, 653
BssAI	RCCGGY	2 cut(s)	567, 749
BssECI	CCNNGG	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	5 cut(s)	22, 268, 492, 544, 784
Bst6I	CTCTTC	2 cut(s)	47, 362
BstC8I	GCNNGC	2 cut(s)	506, 520
BstDEI	CTNAG	3 cut(s)	136, 223, 423
BstDSI	CCRYGG	1 cut(s)	356
BstEII	GGTNACC	1 cut(s)	752
BstF5I	GGATG	3 cut(s)	93, 719, 780
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	486
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	2 cut(s)	111, 522
BstPI	GGTNACC	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	780
BstV1I	GCAGC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	765
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	3 cut(s)	93, 719, 780
BtsIMutI	CAGTG	2 cut(s)	27, 549
Cac8I	GCNNGC	2 cut(s)	506, 520
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	2 cut(s)	567, 749
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	220
CspAI	ACCGGT	2 cut(s)	567, 749
CviAII	CATG	7 cut(s)	108, 197, 232, 357, 519, 532, 612
CviJI	RGCY	6 cut(s)	173, 439, 508, 658, 743, 765
CviKI_1	RGCY	6 cut(s)	173, 439, 508, 658, 743, 765
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	136, 223, 423
EaeI	YGGCCR	1 cut(s)	763
Eam1104I	CTCTTC	2 cut(s)	47, 362
EarI	CTCTTC	2 cut(s)	47, 362
Eco130I	CCWWGG	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	379
EcoO65I	GGTNACC	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	7 cut(s)	111, 200, 235, 360, 522, 535, 615
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	7 cut(s)	107, 196, 231, 356, 518, 531, 611
FblI	GTMKAC	1 cut(s)	779
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	2 cut(s)	100, 726
Fsp4HI	GCNGC	1 cut(s)	100
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	100
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	2 cut(s)	321, 412
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	765
HapII	CCGG	3 cut(s)	568, 750, 772
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	7 cut(s)	111, 200, 235, 360, 522, 535, 615
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	3 cut(s)	451, 547, 608
HpaII	CCGG	3 cut(s)	568, 750, 772
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	3 cut(s)	220, 264, 780
Hpy188I	TCNGA	1 cut(s)	788
Hpy188III	TCNNGA	6 cut(s)	34, 341, 458, 467, 551, 640
Hpy8I	GTNNAC	3 cut(s)	220, 264, 780
HpyCH4III	ACNGT	5 cut(s)	22, 268, 492, 544, 784
HpyCH4V	TGCA	5 cut(s)	248, 434, 504, 522, 615
HpyF3I	CTNAG	3 cut(s)	136, 223, 423
Hsp92II	CATG	7 cut(s)	111, 200, 235, 360, 522, 535, 615
HspAI	GCGC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	96, 393
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	3 cut(s)	65, 669, 704
MaeIII	GTNAC	2 cut(s)	283, 752
MboII	GAAGA	3 cut(s)	34, 379, 434
MlsI	TGGCCA	1 cut(s)	765
MluCI	AATT	1 cut(s)	385
MluNI	TGGCCA	1 cut(s)	765
MlyI	GAGTC	2 cut(s)	445, 556
MnlI	CCTC	9 cut(s)	50, 131, 337, 357, 363, 465, 465, 636, 701
Mox20I	TGGCCA	1 cut(s)	765
MroXI	GAANNNNTTC	2 cut(s)	41, 703
MscI	TGGCCA	1 cut(s)	765
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	677
Msp20I	TGGCCA	1 cut(s)	765
MspI	CCGG	3 cut(s)	568, 750, 772
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	356
NlaIII	CATG	7 cut(s)	111, 200, 235, 360, 522, 535, 615
NlaIV	GGNNCC	1 cut(s)	381
NspI	RCATGY	2 cut(s)	111, 522
PaeI	GCATGC	1 cut(s)	522
PaeR7I	CTCGAG	1 cut(s)	341
PciI	ACATGT	1 cut(s)	107
PdmI	GAANNNNTTC	2 cut(s)	41, 703
PfeI	GAWTC	1 cut(s)	608
PflMI	CCANNNNNTGG	1 cut(s)	390
PinAI	ACCGGT	2 cut(s)	567, 749
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	2 cut(s)	445, 555
PpsI	GAGTC	2 cut(s)	445, 555
PpuMI	RGGWCCY	1 cut(s)	379
PscI	ACATGT	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	313
PspEI	GGTNACC	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	379
PspPPI	RGGWCCY	1 cut(s)	379
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	2 cut(s)	445, 556
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	7 cut(s)	11, 42, 67, 298, 441, 660, 745
SfaNI	GCATC	3 cut(s)	65, 669, 704
SfcI	CTRYAG	1 cut(s)	780
Sfr274I	CTCGAG	1 cut(s)	341
SinI	GGWCC	1 cut(s)	379
SlaI	CTCGAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	2 cut(s)	341, 467
SmoI	CTYRAG	2 cut(s)	341, 467
SphI	GCATGC	1 cut(s)	522
Sse9I	AATT	1 cut(s)	385
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	5 cut(s)	22, 268, 492, 544, 784
TaqI	TCGA	2 cut(s)	342, 459
TasI	AATT	1 cut(s)	385
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	27, 549
TseI	GCWGC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	169, 600
TspRI	CASTG	2 cut(s)	27, 549
Van91I	CCANNNNNTGG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	379
XceI	RCATGY	2 cut(s)	111, 522
XhoI	CTCGAG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	779
XmnI	GAANNNNTTC	2 cut(s)	41, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.