Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009503

Physical Location & Seq

Genomic Coordinates Reverse (-)

19577322 .. 19579534

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTACAGGTTCAGCAACACAGTGATAGGGTTCTTGAACCTCTTCAGTCTCTTAGCATCAATACCAATAATCGCCGGAGGTCTATGGATGGCAAGGAGCAGTACCACATGTGAAACTTTCCTCCAAACCCCACTTTTGGTGGTGGGTTTTGTGGTGCTCATAGTATCCCTAGCTGGGTTTATTGGTGCCTGCTTCCATGTGGCCTGGGCACTCTGGGTGTACTTGGTGGTGATGCTGCTGATTATTGCAACCCTAATGGGTTTGACTGTGTTTGGGTTTGTGGTTACAAGCCAAGGTGCTGGAGTGGAGGTGCCTGGTAGGGTCTATAAGGAGTACCACCTTGAGGATTACTCACCATGGTTAAGGAATAGGGTTAACGATCCTAATTATTGGAGTAAGATTAGGAGTTGCATCTTGGGGTCTAAAACTTGTGCTGAGCTTATTGCTTGGACACCTCTTGATTATCTTGAAAGAGACATGTCTCCAATACAGTCTGGTTGTTGCAAGCCCCCAACTTTATGCAATTACAACATGGCAACTACAGTGAGTCAAGACCAAGATTGCTACCGGTGGAATAATGCGCCTAATATGTTATGTTACGAGTGCGATTCGTGCAAAGCTGGAGTTCTTGAAGATATCAAGAAGGACTGGCACAAGCTCTCTGTGTTGAACATTGTCATGCTTGTGGTCCTCATTGGAGTATATTCAATCGGTTGCTGTGCTTTCCGAAACACACAACGAGCTGAAACGGATCACCCGTATGGTCAGAACCGGATGAGCAAAGTTCGTCCCCGATGGGATTACCACTGGTGGAGATGGTGGCACCACAGAAGAGAACAGCTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

283

Amino Acids

32.43

Weight (kDa)

8.38

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12090
fragaria_vesca	FvH4_7g19800 FvH4_7g19800 FvH4_7g19830
malus_domestica	MD01G1110500.v1.1 MD07G1176400.v1.1
prunus_persica	Prupe.2G215300_v2.0.a1
pyrus_communis	pycom01g13770 pycom07g17060
rosa_chinensis	RchiOBHm_Chr1g0363771 RchiOBHm_Chr1g0363801
rosa_laevigata	RLG00000027548
rosa_multiflora	Rmu_sc0000548.1_g000025
rosa_roxburghii	Rroxscaffold_4G00292960
rosa_rugosa	Rorug01G0309000 Rorug01G0309100 Rorug01G0309200
rosa_samantha	Rh1AG317900 Rh1BG281200 Rh1CG297500 Rh1DG312500
rosa_wichuraiana	Rw1G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	185, 310, 822
AclWI	GGATC	2 cut(s)	374, 759
AcuI	CTGAAG	1 cut(s)	28
AfaI	GTAC	4 cut(s)	5, 103, 221, 335
AfiI	CCNNNNNNNGG	3 cut(s)	136, 174, 343
AflIII	ACRYGT	2 cut(s)	107, 477
AgeI	ACCGGT	1 cut(s)	567
AgsI	TTSAA	5 cut(s)	37, 470, 632, 670, 708
AjnI	CCWGG	2 cut(s)	203, 313
AluBI	AGCT	6 cut(s)	173, 439, 620, 658, 743, 841
AluI	AGCT	6 cut(s)	173, 439, 620, 658, 743, 841
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	3 cut(s)	53, 468, 486
AlwI	GGATC	2 cut(s)	374, 759
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	3 cut(s)	241, 345, 746
AvaII	GGWCC	1 cut(s)	688
BaeGI	GKGCMC	1 cut(s)	211
BanI	GGYRCC	3 cut(s)	185, 310, 822
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	3 cut(s)	82, 789, 810
BciT130I	CCWGG	2 cut(s)	205, 315
BciVI	GTATCC	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	53, 468, 486
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	540
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	236
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	205, 315
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	3 cut(s)	187, 312, 824
BmrFI	CCNGG	2 cut(s)	205, 315
BmsI	GCATC	3 cut(s)	65, 222, 420
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BpmI	CTGGAG	2 cut(s)	321, 642
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	204, 292, 356
BsaWI	WCCGGW	2 cut(s)	567, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 174, 343
Bse118I	RCCGGY	1 cut(s)	567
Bse1I	ACTGG	2 cut(s)	653, 812
BseBI	CCWGG	2 cut(s)	205, 315
BseDI	CCNNGG	3 cut(s)	204, 292, 356
BseGI	GGATG	2 cut(s)	93, 780
BseLI	CCNNNNNNNGG	3 cut(s)	136, 174, 343
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	653, 812
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	3 cut(s)	185, 310, 822
BshTI	ACCGGT	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	75, 568, 772
BslFI	GGGAC	1 cut(s)	774
BslI	CCNNNNNNNGG	3 cut(s)	136, 174, 343
BsmAI	GTCTC	3 cut(s)	53, 468, 486
BsmFI	GGGAC	1 cut(s)	774
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	159, 211
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	379, 751
Bsp1720I	GCTNAGC	1 cut(s)	435
Bsp19I	CCATGG	1 cut(s)	356
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	187, 312, 824
BspPI	GGATC	2 cut(s)	374, 759
BspT107I	GGYRCC	3 cut(s)	185, 310, 822
BsrFI	RCCGGY	1 cut(s)	567
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	653, 812
BssAI	RCCGGY	1 cut(s)	567
BssECI	CCNNGG	3 cut(s)	204, 292, 356
BssMI	GATC	2 cut(s)	379, 751
BssT1I	CCWWGG	2 cut(s)	292, 356
Bst2UI	CCWGG	2 cut(s)	205, 315
Bst4CI	ACNGT	4 cut(s)	22, 268, 492, 544
Bst6I	CTCTTC	2 cut(s)	47, 826
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	190, 506
BstDEI	CTNAG	2 cut(s)	52, 435
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	93, 780
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	2 cut(s)	382, 754
BstMAI	GTCTC	3 cut(s)	53, 468, 486
BstMBI	GATC	2 cut(s)	379, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	612
BstNI	CCWGG	2 cut(s)	205, 315
BstNSI	RCATGY	2 cut(s)	111, 481
BstSCI	CCNGG	2 cut(s)	203, 313
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	93, 780
BtsIMutI	CAGTG	3 cut(s)	27, 549, 805
Cac8I	GCNNGC	2 cut(s)	190, 506
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	688
Csp6I	GTAC	4 cut(s)	4, 102, 220, 334
CspAI	ACCGGT	1 cut(s)	567
CviAII	CATG	6 cut(s)	108, 197, 357, 478, 532, 679
CviJI	RGCY	9 cut(s)	173, 203, 291, 439, 508, 620, 658, 743, 841
CviKI_1	RGCY	9 cut(s)	173, 203, 291, 439, 508, 620, 658, 743, 841
CviQI	GTAC	4 cut(s)	4, 102, 220, 334
DdeI	CTNAG	2 cut(s)	52, 435
DpnI	GATC	2 cut(s)	381, 753
DpnII	GATC	2 cut(s)	379, 751
Eam1104I	CTCTTC	2 cut(s)	47, 826
EarI	CTCTTC	2 cut(s)	47, 826
Eco130I	CCWWGG	2 cut(s)	292, 356
Eco32I	GATATC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	203, 313
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	2 cut(s)	292, 356
ErhI	CCWWGG	2 cut(s)	292, 356
FaeI	CATG	6 cut(s)	111, 200, 360, 481, 535, 682
FaqI	GGGAC	1 cut(s)	774
FatI	CATG	6 cut(s)	107, 196, 356, 477, 531, 678
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	2 cut(s)	100, 787
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	2 cut(s)	321, 642
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	3 cut(s)	75, 568, 772
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	6 cut(s)	111, 200, 360, 481, 535, 682
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	2 cut(s)	547, 608
HpaI	GTTAAC	1 cut(s)	376
HpaII	CCGG	3 cut(s)	75, 568, 772
HphI	GGTGA	3 cut(s)	241, 345, 746
Hpy166II	GTNNAC	2 cut(s)	220, 376
Hpy188I	TCNGA	2 cut(s)	728, 768
Hpy188III	TCNNGA	6 cut(s)	34, 458, 467, 551, 629, 640
Hpy8I	GTNNAC	2 cut(s)	220, 376
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	4 cut(s)	22, 268, 492, 544
HpyCH4V	TGCA	5 cut(s)	248, 411, 504, 522, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	612
HpyF3I	CTNAG	2 cut(s)	52, 435
Hsp92II	CATG	6 cut(s)	111, 200, 360, 481, 535, 682
HspAI	GCGC	1 cut(s)	581
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	379, 751
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	3 cut(s)	65, 222, 420
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	2 cut(s)	283, 596
MalI	GATC	2 cut(s)	381, 753
MboI	GATC	2 cut(s)	379, 751
MboII	GAAGA	3 cut(s)	34, 644, 843
MhlI	GDGCHC	2 cut(s)	159, 211
MluCI	AATT	2 cut(s)	385, 523
MlyI	GAGTC	1 cut(s)	556
MnlI	CCTC	7 cut(s)	50, 71, 131, 301, 337, 465, 701
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	2 cut(s)	362, 375
MslI	CAYNNNNRTG	3 cut(s)	677, 683, 759
MspI	CCGG	3 cut(s)	75, 568, 772
MspR9I	CCNGG	2 cut(s)	205, 315
MvaI	CCWGG	2 cut(s)	205, 315
MwoI	GCNNNNNNNGC	1 cut(s)	612
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	379, 751
NlaIII	CATG	6 cut(s)	111, 200, 360, 481, 535, 682
NlaIV	GGNNCC	3 cut(s)	187, 312, 824
NspI	RCATGY	2 cut(s)	111, 481
PciI	ACATGT	2 cut(s)	107, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	608
PinAI	ACCGGT	1 cut(s)	567
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
PscI	ACATGT	2 cut(s)	107, 477
Psp6I	CCWGG	2 cut(s)	203, 313
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	203, 313
PspN4I	GGNNCC	3 cut(s)	187, 312, 824
PspPI	GGNCC	1 cut(s)	688
RsaI	GTAC	4 cut(s)	5, 103, 221, 335
RsaNI	GTAC	4 cut(s)	4, 102, 220, 334
RseI	CAYNNNNRTG	3 cut(s)	677, 683, 759
SaqAI	TTAA	2 cut(s)	362, 375
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	2 cut(s)	379, 751
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	2 cut(s)	205, 315
SduI	GDGCHC	2 cut(s)	159, 211
SfaNI	GCATC	3 cut(s)	65, 222, 420
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	688
SmiMI	CAYNNNNRTG	3 cut(s)	677, 683, 759
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	385, 523
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	203, 313
StyI	CCWWGG	2 cut(s)	292, 356
TaaI	ACNGT	4 cut(s)	22, 268, 492, 544
TasI	AATT	2 cut(s)	385, 523
TatI	WGTACW	2 cut(s)	3, 219
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	2 cut(s)	362, 375
Tru9I	TTAA	2 cut(s)	362, 375
TscAI	CASTG	3 cut(s)	27, 549, 812
TseI	GCWGC	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	3 cut(s)	27, 549, 812
VpaK11BI	GGWCC	1 cut(s)	688
XceI	RCATGY	2 cut(s)	111, 481
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.