Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009503

Physical Location & Seq

Genomic Coordinates Reverse (-)

24613756 .. 24616200

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTATAGGTTCAGCAACACAGTGATAGGGTTCTTGAACCTCTTCACTCTCTTAGCATCAATACCCATAATTGGAGGAGGTCTATGGATGGCAAGGAGCAGCACCACATGTGAAACCTTCCTGCAAACCCCACTTCTGGTGGTGGGTTTTGTTGTGCTCATCATATCTCTAGCAGGCTTCATTGGTGCTTGCTTCAATGTGGCTTGGGCACTTTGGGTGTACTTAGTGGTTATGTTGCTCCTAATTGCAACCCTAATGGGTTTAACTGTGTTTGGGTTTGTGGTCACAAGTCAAGGTGGTGGAGTGGATGTGCCTAGTAGGGTTTATAAGGAGTACCATCTTGAAGATTACTCACCATGGTTGAAGAATAGGATTAAGGATCCTAATTATTGGACTAAGATTAGGAGTTGCATACTGGGGTCTAAGACTTGTGCCAAGCTTGTTGCTTGGACACCTCTTGATTATCTTGAGAGAGACATGTCTCCCATACAGTCTGGTTGTTGTAAGCCACCAACATCATGCAATTACAACATGGCAACCACGGTGAGTCAAGACCCGGACTGCTACCGGTGGAACAATGCGCCCAATTTGTTATGCTACGAGTGCGATTCATGCAAAGCTGGAGTGCTTGAAGACATCAAAAGAGACTGGCATAAGCTCTCTGTCCTCAACATCGTCATGCTTATGGTCCTCATTGGAATCTATTCAATTGGGTGCTGTGCTTTCCGGAACACCCAAAGAGCTGAAACGGACCACCCGTATGGTCAGAACCGGATGTCCAAAGTTCGACCCAGATGGGATTACTATTGGTGGAGATGGTGGCATCACAGAAAGGAACAGCTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

283

Amino Acids

32.42

Weight (kDa)

8.74

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12090
fragaria_vesca	FvH4_7g19800 FvH4_7g19800 FvH4_7g19830
malus_domestica	MD01G1110500.v1.1 MD07G1176400.v1.1
prunus_persica	Prupe.2G215300_v2.0.a1
pyrus_communis	pycom01g13770 pycom07g17060
rosa_chinensis	RchiOBHm_Chr1g0363771 RchiOBHm_Chr1g0363801
rosa_laevigata	RLG00000027548
rosa_multiflora	Rmu_sc0000548.1_g000025
rosa_roxburghii	Rroxscaffold_4G00292960
rosa_rugosa	Rorug01G0309000 Rorug01G0309100 Rorug01G0309200
rosa_samantha	Rh1AG317900 Rh1BG281200 Rh1CG297500 Rh1DG312500
rosa_wichuraiana	Rw1G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	726
AclWI	GGATC	2 cut(s)	374, 387
AfaI	GTAC	2 cut(s)	221, 335
AfiI	CCNNNNNNNGG	2 cut(s)	71, 136
AflIII	ACRYGT	2 cut(s)	107, 477
AgeI	ACCGGT	1 cut(s)	567
AgsI	TTSAA	6 cut(s)	37, 196, 344, 364, 632, 708
AloI	GAACNNNNNNTCC	2 cut(s)	761, 793
AluBI	AGCT	5 cut(s)	439, 620, 658, 743, 841
AluI	AGCT	5 cut(s)	439, 620, 658, 743, 841
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	3 cut(s)	468, 486, 639
AlwI	GGATC	2 cut(s)	374, 387
Aor13HI	TCCGGA	1 cut(s)	726
ApeKI	GCWGC	1 cut(s)	99
AsiGI	ACCGGT	1 cut(s)	567
Asp700I	GAANNNNTTC	2 cut(s)	41, 703
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	2 cut(s)	688, 751
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	345, 556
AvaII	GGWCC	2 cut(s)	688, 751
BaeGI	GKGCMC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	4 cut(s)	82, 345, 789, 810
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	3 cut(s)	468, 486, 639
BfaI	CTAG	2 cut(s)	170, 315
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	2 cut(s)	688, 751
BmgT120I	GGNCC	2 cut(s)	688, 751
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	557
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	65, 832
BmuI	ACTGGG	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	356, 540
BsaWI	WCCGGW	3 cut(s)	567, 726, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 136
Bse118I	RCCGGY	1 cut(s)	567
Bse1I	ACTGG	2 cut(s)	420, 653
BseAI	TCCGGA	1 cut(s)	726
BseDI	CCNNGG	2 cut(s)	356, 540
BseGI	GGATG	3 cut(s)	93, 313, 780
BseLI	CCNNNNNNNGG	2 cut(s)	71, 136
BseNI	ACTGG	2 cut(s)	420, 653
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	111
BshTI	ACCGGT	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	4 cut(s)	557, 568, 727, 772
BslI	CCNNNNNNNGG	2 cut(s)	71, 136
BsmAI	GTCTC	3 cut(s)	468, 486, 639
Bsp1286I	GDGCHC	2 cut(s)	159, 211
Bsp13I	TCCGGA	1 cut(s)	726
Bsp143I	GATC	1 cut(s)	379
Bsp19I	CCATGG	1 cut(s)	356
BspEI	TCCGGA	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	374, 387
BsrFI	RCCGGY	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	420, 653
BssAI	RCCGGY	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	356, 540
BssMI	GATC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	356
Bst4CI	ACNGT	4 cut(s)	22, 268, 492, 544
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	175, 190
BstDEI	CTNAG	4 cut(s)	52, 223, 396, 423
BstDSI	CCRYGG	2 cut(s)	356, 540
BstF5I	GGATG	3 cut(s)	93, 313, 780
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	3 cut(s)	468, 486, 639
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	603, 612
BstNSI	RCATGY	2 cut(s)	111, 481
BstSCI	CCNGG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	379
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	379
BtgI	CCRYGG	2 cut(s)	356, 540
BtsCI	GGATG	3 cut(s)	93, 313, 780
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	175, 190
CfoI	GCGC	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	567
Cfr13I	GGNCC	2 cut(s)	688, 751
Csp6I	GTAC	2 cut(s)	220, 334
CspAI	ACCGGT	1 cut(s)	567
CviAII	CATG	7 cut(s)	108, 357, 478, 519, 532, 612, 679
CviJI	RGCY	8 cut(s)	177, 203, 439, 508, 620, 658, 743, 841
CviKI_1	RGCY	8 cut(s)	177, 203, 439, 508, 620, 658, 743, 841
CviQI	GTAC	2 cut(s)	220, 334
DdeI	CTNAG	4 cut(s)	52, 223, 396, 423
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	356
Eco47I	GGWCC	2 cut(s)	688, 751
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	7 cut(s)	111, 360, 481, 522, 535, 615, 682
FatI	CATG	7 cut(s)	107, 356, 477, 518, 531, 611, 678
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	3 cut(s)	100, 320, 787
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	2 cut(s)	170, 315
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	642
HapII	CCGG	4 cut(s)	557, 568, 727, 772
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	7 cut(s)	111, 360, 481, 522, 535, 615, 682
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	3 cut(s)	547, 608, 699
HpaII	CCGG	4 cut(s)	557, 568, 727, 772
HphI	GGTGA	2 cut(s)	345, 556
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	768
Hpy188III	TCNNGA	6 cut(s)	34, 341, 458, 467, 551, 727
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	4 cut(s)	22, 268, 492, 544
HpyCH4V	TGCA	5 cut(s)	124, 248, 411, 522, 615
HpyF10VI	GCNNNNNNNGC	2 cut(s)	603, 612
HpyF3I	CTNAG	4 cut(s)	52, 223, 396, 423
Hsp92II	CATG	7 cut(s)	111, 360, 481, 522, 535, 615, 682
HspAI	GCGC	1 cut(s)	581
Kpn2I	TCCGGA	1 cut(s)	726
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	96, 243
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	65, 832
MaeI	CTAG	2 cut(s)	170, 315
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	4 cut(s)	34, 356, 376, 644
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	159, 211
MluCI	AATT	6 cut(s)	69, 243, 385, 523, 586, 708
MlyI	GAGTC	1 cut(s)	556
MnlI	CCTC	6 cut(s)	50, 68, 71, 465, 677, 701
MroI	TCCGGA	1 cut(s)	726
MroXI	GAANNNNTTC	2 cut(s)	41, 703
MseI	TTAA	2 cut(s)	263, 375
MslI	CAYNNNNRTG	3 cut(s)	677, 683, 759
MspI	CCGG	4 cut(s)	557, 568, 727, 772
MspR9I	CCNGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	708
MwoI	GCNNNNNNNGC	2 cut(s)	603, 612
NciI	CCSGG	1 cut(s)	557
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	7 cut(s)	111, 360, 481, 522, 535, 615, 682
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	2 cut(s)	111, 481
PciI	ACATGT	2 cut(s)	107, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	755
PdmI	GAANNNNTTC	2 cut(s)	41, 703
PfeI	GAWTC	2 cut(s)	608, 699
PinAI	ACCGGT	1 cut(s)	567
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
PscI	ACATGT	2 cut(s)	107, 477
PsiI	TTATAA	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	688, 751
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	2 cut(s)	221, 335
RsaNI	GTAC	2 cut(s)	220, 334
RseI	CAYNNNNRTG	3 cut(s)	677, 683, 759
SaqAI	TTAA	2 cut(s)	263, 375
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	2 cut(s)	688, 751
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	2 cut(s)	159, 211
SfaNI	GCATC	2 cut(s)	65, 832
SinI	GGWCC	2 cut(s)	688, 751
SmiMI	CAYNNNNRTG	3 cut(s)	677, 683, 759
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	6 cut(s)	69, 243, 385, 523, 586, 708
SspMI	CTAG	2 cut(s)	170, 315
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	4 cut(s)	22, 268, 492, 544
TaqI	TCGA	1 cut(s)	787
TasI	AATT	6 cut(s)	69, 243, 385, 523, 586, 708
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	608, 699
Tru1I	TTAA	2 cut(s)	263, 375
Tru9I	TTAA	2 cut(s)	263, 375
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	169, 600
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	688, 751
XceI	RCATGY	2 cut(s)	111, 481
XmnI	GAANNNNTTC	2 cut(s)	41, 703
XspI	CTAG	2 cut(s)	170, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.