Rorug01G0309000

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009503
Physical Location & Seq
Forward (+)
42541614 .. 42542345
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0309000.1

Sequence Viewer

Length: 732 bp
ATGGTGCACACAGATGCTAGGTTCGTGGTTGGTGTGGTTGGGAATGTCATCTCTGGCGGCCTTTTCCTCTCCCCAATTCCTACGTTCATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAGACCTTACCTTACAACAGTGTTAAACTGTTTGTTCTGGTGTTACTACGGATTGCCATTTGTTAACCCAAATAGCATTTTAGTTGTCACTATTAATGGAATTGGGCTATCTATAGAGCTCATATATCTTGTCATATTCTTCTATTATGCCGCAGCAAAAGGACGAAAGAGGGTTGCTACATACTTTATATGTGAACTTATTTTATTTGGGGCTTTGGTGGCTGCAACTATGTTGGCAATACCTGAGCATAAGATGGCAATGAATCGACCTTTGAGGGCTGTCGTAGTTGGTGTGATCTGTGATTTTTTCAATGTCCTCATGTATGGCTCTCCTTTGTTCAACGTGAGAGATGTCATTAAAACTAAGAGTGTGAAATATATGCCATTCACTCTCCTAGTGGCCAACTTCCTGAATGGTTGTTGCTGGACATCCTATGCTCTCATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGCGCAATTTTTGGGGCATTTCAATTGATAGTTTATGCAAGATACTACAAAACTACACCAAAAGATGAAGACCTCTTTGGCAAGACTACTAATGAAGTGCAACTCTGTACTAATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

243

Amino Acids

27.29

Weight (kDa)

9.02

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 9 - 96 5.2e-21 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 138 - 222 7.9e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 57, 279
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 528
AfaI GTAC 1 cut(s) 721
AgsI TTSAA 3 cut(s) 439, 469, 635
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 2 cut(s) 119, 247
AluI AGCT 2 cut(s) 119, 247
Alw21I GWGCWC 2 cut(s) 9, 249
Alw26I GTCTC 1 cut(s) 614
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 1 cut(s) 119
AoxI GGCC 2 cut(s) 58, 528
ApaLI GTGCAC 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 281, 350
AseI ATTAAT 1 cut(s) 222
AspLEI GCGC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 530
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 2 cut(s) 9, 249
BbvI GCAGC 2 cut(s) 293, 337
BccI CCATC 1 cut(s) 376
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 2 cut(s) 18, 524
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 4 cut(s) 58, 279, 282, 351
BlsI GCNGC 4 cut(s) 59, 280, 283, 352
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 614
Bse3DI GCAATG 1 cut(s) 393
BseGI GGATG 1 cut(s) 557
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 293, 337
BshFI GGCC 2 cut(s) 60, 530
BsiHKAI GWGCWC 2 cut(s) 9, 249
BsmAI GTCTC 1 cut(s) 614
BsnI GGCC 2 cut(s) 60, 530
Bso31I GGTCTC 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 9, 249
Bsp143I GATC 2 cut(s) 124, 423
BspACI CCGC 2 cut(s) 57, 279
BspANI GGCC 2 cut(s) 60, 530
BspCNI CTCAG 1 cut(s) 364
BspPI GGATC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 393
BssMI GATC 2 cut(s) 124, 423
Bst4CI ACNGT 3 cut(s) 148, 158, 608
BstDEI CTNAG 2 cut(s) 372, 492
BstF5I GGATG 1 cut(s) 557
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 2 cut(s) 127, 426
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 2 cut(s) 124, 423
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 240
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 293, 337
BstV2I GAAGAC 1 cut(s) 687
BsuRI GGCC 2 cut(s) 60, 530
BtsCI GGATG 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 153
CfoI GCGC 1 cut(s) 617
Csp6I GTAC 1 cut(s) 720
CviAII CATG 1 cut(s) 448
CviJI RGCY 9 cut(s) 60, 119, 235, 247, 341, 350, 407, 456, 530
CviKI_1 RGCY 9 cut(s) 60, 119, 235, 247, 341, 350, 407, 456, 530
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 2 cut(s) 372, 492
DpnI GATC 2 cut(s) 126, 425
DpnII GATC 2 cut(s) 124, 423
EaeI YGGCCR 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 1 cut(s) 451
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 4 cut(s) 58, 279, 282, 351
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 58, 279, 282, 351
FspBI CTAG 2 cut(s) 18, 524
GlaI GCGC 1 cut(s) 616
GluI GCNGC 4 cut(s) 58, 279, 282, 351
HaeIII GGCC 2 cut(s) 60, 530
HhaI GCGC 1 cut(s) 617
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 1 cut(s) 391
HpaI GTTAAC 1 cut(s) 193
Hpy166II GTNNAC 4 cut(s) 7, 193, 323, 583
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 4 cut(s) 7, 193, 323, 583
HpyCH4III ACNGT 3 cut(s) 148, 158, 608
HpyCH4IV ACGT 2 cut(s) 83, 471
HpyCH4V TGCA 4 cut(s) 7, 353, 650, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 2 cut(s) 372, 492
HpySE526I ACGT 2 cut(s) 83, 471
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 1 cut(s) 615
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 124, 423
LpnPI CCDG 5 cut(s) 39, 151, 384, 538, 551
Lsp1109I GCAGC 2 cut(s) 293, 337
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 18, 524
MaeII ACGT 2 cut(s) 83, 471
MaeIII GTNAC 2 cut(s) 170, 214
MalI GATC 2 cut(s) 126, 425
MboI GATC 2 cut(s) 124, 423
MboII GAAGA 2 cut(s) 259, 692
MfeI CAATTG 1 cut(s) 635
MhlI GDGCHC 2 cut(s) 9, 249
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 4 cut(s) 75, 228, 618, 635
MluNI TGGCCA 1 cut(s) 530
MnlI CCTC 5 cut(s) 77, 291, 396, 455, 695
Mox20I TGGCCA 1 cut(s) 530
MscI TGGCCA 1 cut(s) 530
MseI TTAA 4 cut(s) 152, 192, 222, 486
MslI CAYNNNNRTG 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 530
MunI CAATTG 1 cut(s) 635
MwoI GCNNNNNNNGC 1 cut(s) 347
NdeII GATC 2 cut(s) 124, 423
NlaIII CATG 1 cut(s) 451
NmeAIII GCCGAG 1 cut(s) 591
NmuCI GTSAC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 4 cut(s) 59, 280, 283, 352
PshBI ATTAAT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 249
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 4 cut(s) 152, 192, 222, 486
SatI GCNGC 4 cut(s) 58, 279, 282, 351
Sau3AI GATC 2 cut(s) 124, 423
SduI GDGCHC 2 cut(s) 9, 249
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 4 cut(s) 75, 228, 618, 635
SsiI CCGC 2 cut(s) 57, 279
SspMI CTAG 2 cut(s) 18, 524
SstI GAGCTC 1 cut(s) 249
TaaI ACNGT 3 cut(s) 148, 158, 608
TaiI ACGT 2 cut(s) 86, 474
TaqI TCGA 2 cut(s) 123, 394
TasI AATT 4 cut(s) 75, 228, 618, 635
TatI WGTACW 1 cut(s) 719
TauI GCSGC 2 cut(s) 60, 281
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 4 cut(s) 152, 192, 222, 486
Tru9I TTAA 4 cut(s) 152, 192, 222, 486
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 2 cut(s) 281, 350
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 5 cut(s) 76, 404, 580, 693, 720
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 153
VneI GTGCAC 1 cut(s) 5
VspI ATTAAT 1 cut(s) 222
XspI CTAG 2 cut(s) 18, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.