Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010291

Physical Location & Seq

Genomic Coordinates Forward (+)

3880908 .. 3882851

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGAATGATGGAAGATCCAATGAGAAAAATCTGTACGAGGTTCTTGGTGTTGAAGCAACAGCATCTCCACAAGAGATAAGGAAAGCGTATCATAAGTTAGCATTGAGGCTTCATCCTGATAAAAACAAGGATGATGAGGATGCTAAAGAGAAATTTCAGCAGTTGCAAAAGGTTATTTCGATTCTCGGTGATGAAGAGAAAAGAGCAGTCTATGATCAAACTGGCTCAGTTGATGATGCTGATCTTTCGGGAGATGTGGTTGACAACTTGAGGGACTTCTTCAAGGCAATGTACAAGAAGGTCACCGAGGAAGATATTGAAGAGTTTGAGGCCAACTATAGGGGTTCTGAATCCGAGAAGAATGATTTGATTGAGCTATATAACAAGTTTAAGGGTAAAATGAGCAGGCTTTTCTGCTCAATGCTTTGCTCGAACCCCAAGCTTGATTCGCACCGTTTCAAAGATATTATCGATGAGGCCATTGCAGCGGGAGAAGTGAAATCAACAAAAGCTTACAAGAAATGGGCAAAGGAGATTGCAGAAATGGAACCTCCCACGAATCCCCAGAAGATGAGACGGAAAGCAGCAAAGGCTGCAGATAAAGATTTATACGCTGTAATGTCCCAGCGGGGAGATGAGAGGAAAGAGAAGTTCGATTCAATGTTCTCTTCACTTGTCTCTAGGTATGGTAGCAATGCTGACTCTGAGCCAAACGAAGAAGAGTTCGAAGCTGCTCAGAGAAAAGTTGAAAGCCGGAGATCATCGAAGAAGTCTAGAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

262

Amino Acids

30.15

Weight (kDa)

6.11

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	47 - 109	1.1e-24	DnaJ domain
HTH_DNAJC9	PF23302	150 - 217	2e-26	DNAJC9 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12170 AT3G12170 AT5G06910
fragaria_vesca	FvH4_5g27800
malus_domestica	MD12G1065200.v1.1 MD14G1065200.v1.1
prunus_persica	Prupe.7G068800_v2.0.a1 Prupe.7G068800_v2.0.a1
pyrus_communis	pycom12g05700 pycom14g05310
rosa_chinensis	RchiOBHm_Chr3g0480921
rosa_laevigata	RLG00000023441
rosa_multiflora	Rmu_co8261701.1_g000001 Rmu_sc0006028.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400880
rosa_rugosa	Rorug03G0187700
rosa_samantha	Rh3AG239100 Rh3BG273300 Rh3CG268900 Rh3DG264900
rosa_wichuraiana	Rw3G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	491, 631
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	155
AfaI	GTAC	2 cut(s)	38, 296
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	6 cut(s)	56, 286, 323, 463, 663, 752
AluBI	AGCT	4 cut(s)	379, 445, 515, 734
AluI	AGCT	4 cut(s)	379, 445, 515, 734
Alw26I	GTCTC	2 cut(s)	571, 685
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	333, 480
ApeKI	GCWGC	4 cut(s)	488, 587, 596, 734
ApoI	RAATTY	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	203, 298
AsuII	TTCGAA	1 cut(s)	729
BbvI	GCAGC	4 cut(s)	500, 583, 599, 721
BccI	CCATC	1 cut(s)	5
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	571, 685
BfaI	CTAG	2 cut(s)	684, 777
BfmI	CTRYAG	2 cut(s)	340, 597
BisI	GCNGC	4 cut(s)	489, 588, 597, 735
BlsI	GCNGC	4 cut(s)	490, 589, 598, 736
BmiI	GGNNCC	1 cut(s)	552
BmsI	GCATC	3 cut(s)	74, 133, 229
Bpu14I	TTCGAA	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	292
Bsa29I	ATCGAT	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	309
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	3 cut(s)	297, 483, 703
Bse8I	GATNNNNATC	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	3 cut(s)	115, 139, 148
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	3 cut(s)	297, 483, 703
BseMII	CTCAG	3 cut(s)	243, 699, 752
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	4 cut(s)	500, 583, 599, 721
BseYI	CCCAGC	1 cut(s)	627
BshFI	GGCC	2 cut(s)	335, 482
BshVI	ATCGAT	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	757
BslFI	GGGAC	2 cut(s)	290, 610
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	2 cut(s)	571, 685
BsmBI	CGTCTC	1 cut(s)	571
BsmFI	GGGAC	2 cut(s)	290, 610
BsnI	GGCC	2 cut(s)	335, 482
Bsp119I	TTCGAA	1 cut(s)	729
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	17, 217, 244, 761
BspACI	CCGC	2 cut(s)	491, 631
BspANI	GGCC	2 cut(s)	335, 482
BspCNI	CTCAG	3 cut(s)	242, 700, 751
BspDI	ATCGAT	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	729
BsrDI	GCAATG	3 cut(s)	297, 483, 703
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	17, 217, 244, 761
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	4 cut(s)	192, 318, 676, 717
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	3 cut(s)	229, 708, 738
BstEII	GGTNACC	1 cut(s)	304
BstF5I	GGATG	3 cut(s)	115, 139, 148
BstKTI	GATC	4 cut(s)	20, 220, 247, 764
BstMAI	GTCTC	2 cut(s)	571, 685
BstMBI	GATC	4 cut(s)	17, 217, 244, 761
BstMWI	GCNNNNNNNGC	4 cut(s)	451, 488, 593, 596
BstPI	GGTNACC	1 cut(s)	304
BstSFI	CTRYAG	2 cut(s)	340, 597
BstV1I	GCAGC	4 cut(s)	500, 583, 599, 721
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	335, 482
BsuTUI	ATCGAT	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	115, 139, 148
Cac8I	GCNNGC	1 cut(s)	410
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	37, 295
CviQI	GTAC	2 cut(s)	37, 295
DdeI	CTNAG	3 cut(s)	229, 708, 738
DpnI	GATC	4 cut(s)	19, 219, 246, 763
DpnII	GATC	4 cut(s)	17, 217, 244, 761
Eam1104I	CTCTTC	4 cut(s)	192, 318, 676, 717
EarI	CTCTTC	4 cut(s)	192, 318, 676, 717
Eco91I	GGTNACC	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	571
FaiI	YATR	7 cut(s)	96, 216, 342, 382, 384, 613, 690
FaqI	GGGAC	2 cut(s)	290, 610
FauI	CCCGC	2 cut(s)	484, 624
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	4 cut(s)	489, 588, 597, 735
FokI	GGATG	3 cut(s)	102, 146, 155
Fsp4HI	GCNGC	4 cut(s)	489, 588, 597, 735
FspBI	CTAG	2 cut(s)	684, 777
GluI	GCNGC	4 cut(s)	489, 588, 597, 735
GsaI	CCCAGC	1 cut(s)	631
HaeIII	GGCC	2 cut(s)	335, 482
HapII	CCGG	1 cut(s)	757
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	2 cut(s)	443, 513
HinfI	GANTC	6 cut(s)	184, 353, 449, 562, 659, 704
HpaII	CCGG	1 cut(s)	757
HphI	GGTGA	2 cut(s)	203, 298
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	352, 358, 709, 741
Hpy188III	TCNNGA	3 cut(s)	119, 252, 777
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4V	TGCA	4 cut(s)	169, 488, 542, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	451, 488, 593, 596
HpyF3I	CTNAG	3 cut(s)	229, 708, 738
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	17, 217, 244, 761
LpnPI	CCDG	6 cut(s)	132, 210, 394, 581, 641, 770
Lsp1109I	GCAGC	4 cut(s)	500, 583, 599, 721
LweI	GCATC	3 cut(s)	74, 133, 229
MaeI	CTAG	2 cut(s)	684, 777
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	4 cut(s)	19, 219, 246, 763
MboI	GATC	4 cut(s)	17, 217, 244, 761
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	698
MnlI	CCTC	9 cut(s)	34, 102, 133, 267, 304, 325, 472, 564, 636
MseI	TTAA	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	491, 631
MspI	CCGG	1 cut(s)	757
MwoI	GCNNNNNNNGC	4 cut(s)	451, 488, 593, 596
NdeII	GATC	4 cut(s)	17, 217, 244, 761
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	729
PfeI	GAWTC	5 cut(s)	184, 353, 449, 562, 659
PkrI	GCNGC	4 cut(s)	490, 589, 598, 736
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
PspEI	GGTNACC	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	2 cut(s)	38, 296
RsaNI	GTAC	2 cut(s)	37, 295
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	4 cut(s)	489, 588, 597, 735
Sau3AI	GATC	4 cut(s)	17, 217, 244, 761
SchI	GAGTC	1 cut(s)	698
SetI	ASST	9 cut(s)	45, 177, 306, 381, 447, 517, 556, 689, 736
SfaNI	GCATC	3 cut(s)	74, 133, 229
SfcI	CTRYAG	2 cut(s)	340, 597
SfuI	TTCGAA	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	2 cut(s)	491, 631
SspMI	CTAG	2 cut(s)	684, 777
TaaI	ACNGT	1 cut(s)	458
TaqI	TCGA	6 cut(s)	182, 434, 474, 657, 729, 767
TasI	AATT	1 cut(s)	155
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	5 cut(s)	184, 353, 449, 562, 659
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	4 cut(s)	488, 587, 596, 734
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	104, 210
TspGWI	ACGGA	1 cut(s)	595
XapI	RAATTY	1 cut(s)	155
XbaI	TCTAGA	1 cut(s)	776
XspI	CTAG	2 cut(s)	684, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.