Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010291

Physical Location & Seq

Genomic Coordinates Reverse (-)

23089295 .. 23092202

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGAAAGAGAAAGAGAGCTAGGGTTTCTGAGCAAAAGCAAGCACCGGAAGCCGGAGAAGACGAACAGCCAATGGACGAAGATCACAACGCCTCTTCAAGTAACAACAAGACTCTCTACGAGGTTCTTGGTGTGGAGAGAAGCGCCTCTCAGCAGGAAATTAAGAAGGCGTATCATAAGTTAGCATTGCGACTCCATCCGGATAAAAATCCTGGTGATGAGGAAGCTAAAGAGAAATTTCAGCAATTACAAAAAGTGATCTCGATTCTTGGGGATGAGGAGAAACGAGCACTGTATGACCAGACTGGTTGCGTTGACGATGATTATATAATGACTGCAACTTATTCCAGTGCTGCTTATTCTTTTCGAGTAGTGCTTATGTGGATAGTTGTTTTTCATGAGCAGGACCTTGCTGGTGATGTTGCTCAGAATTTGCATGAATATTTCCGAGCCATGTATAAGAAGGTCACTGAAGCTGACATTGAAGAGTTTGAAGCAAACTATAGGGGATCTGATTCTGAGAAGAAAGATTTGATTGAGCTCTATAGCAAGTACAAGGGCAATATGAACAGACTCTTCTGTTCAATGCTTTGTTCAGATCCTAAGCTTGATTCACACCGCTTTAGGGACATTCTTGATGAGGCAATAGCTTCAGGAGAACTGAAATCAACTAAAGCCTACACAAAATGGGCAAAGAAAGTATCTGAAACAAAACCTCCTACTAGTCCTTTAAAGAGGAAGAGCAAGTCAAGTAAACAGTCAGAACCAGATCTGTATGCCATCATATCTCAGCGTAGGAATGAAAGGAAAGACCAGTTTGAGTCTATGTTCTCTAACCTAGTCTCTAAGTATGGTGGGAGTAATGATGCTTCAGAACCCACAGAAGAAGAATTTGAGGCTACACAGAAAAAGCTTGAAAGCAAAAGGTCCTCCACAAAATCGAAGCGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

317

Amino Acids

36.41

Weight (kDa)

7.03

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	39 - 100	2.4e-26	DnaJ domain
HTH_DNAJC9	PF23302	168 - 236	1.9e-27	DNAJC9 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12170 AT3G12170 AT5G06910
fragaria_vesca	FvH4_5g27800
malus_domestica	MD12G1065200.v1.1 MD14G1065200.v1.1
prunus_persica	Prupe.7G068800_v2.0.a1 Prupe.7G068800_v2.0.a1
pyrus_communis	pycom12g05700 pycom14g05310
rosa_chinensis	RchiOBHm_Chr3g0480921
rosa_laevigata	RLG00000023441
rosa_multiflora	Rmu_co8261701.1_g000001 Rmu_sc0006028.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400880
rosa_rugosa	Rorug03G0187700
rosa_samantha	Rh3AG239100 Rh3BG273300 Rh3CG268900 Rh3DG264900
rosa_wichuraiana	Rw3G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	1 cut(s)	619
AclWI	GGATC	2 cut(s)	517, 593
AcsI	RAATTY	3 cut(s)	236, 430, 890
AcuI	CTGAAG	3 cut(s)	492, 636, 855
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	2 cut(s)	53, 625
AgsI	TTSAA	5 cut(s)	99, 485, 494, 585, 917
AhlI	ACTAGT	1 cut(s)	722
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	7 cut(s)	20, 227, 476, 541, 607, 650, 913
AluI	AGCT	7 cut(s)	20, 227, 476, 541, 607, 650, 913
Alw21I	GWGCWC	2 cut(s)	292, 543
Alw26I	GTCTC	1 cut(s)	847
AlwI	GGATC	2 cut(s)	517, 593
Aor13HI	TCCGGA	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	3 cut(s)	236, 430, 890
AspLEI	GCGC	2 cut(s)	146, 948
AspS9I	GGNCC	2 cut(s)	406, 927
AsuHPI	GGTGA	2 cut(s)	227, 428
AvaII	GGWCC	2 cut(s)	406, 927
BanII	GRGCYC	1 cut(s)	543
BarI	GAAGNNNNNNTAC	2 cut(s)	853, 885
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	292, 543
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	204, 788
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	847
BcuI	ACTAGT	1 cut(s)	722
BfaI	CTAG	3 cut(s)	21, 723, 839
BfmI	CTRYAG	2 cut(s)	502, 544
BfoI	RGCGCY	1 cut(s)	147
BglII	AGATCT	1 cut(s)	769
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	2 cut(s)	406, 927
BmgT120I	GGNCC	2 cut(s)	406, 927
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	856
BpiI	GAAGAC	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	207
BsaWI	WCCGGW	2 cut(s)	46, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 625
Bse1I	ACTGG	3 cut(s)	310, 348, 814
Bse3DI	GCAATG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	196, 280
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	53, 625
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	5 cut(s)	21, 164, 440, 510, 803
BseNI	ACTGG	3 cut(s)	310, 348, 814
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	340
BsiHKAI	GWGCWC	2 cut(s)	292, 543
BsiSI	CCGG	3 cut(s)	47, 54, 200
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	53, 625
BsmAI	GTCTC	1 cut(s)	847
BsmFI	GGGAC	1 cut(s)	641
Bsp1286I	GDGCHC	2 cut(s)	292, 543
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	5 cut(s)	82, 258, 509, 598, 769
BspACI	CCGC	1 cut(s)	619
BspCNI	CTCAG	5 cut(s)	22, 163, 439, 511, 802
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	397
BspPI	GGATC	2 cut(s)	517, 593
BspQI	GCTCTTC	1 cut(s)	734
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	310, 348, 814
BssMI	GATC	5 cut(s)	82, 258, 509, 598, 769
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	294, 759
Bst6I	CTCTTC	4 cut(s)	100, 480, 581, 734
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	7 cut(s)	30, 150, 426, 519, 603, 789, 846
BstF5I	GGATG	2 cut(s)	196, 280
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	146, 948
BstKTI	GATC	5 cut(s)	85, 261, 512, 601, 772
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	5 cut(s)	82, 258, 509, 598, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	2 cut(s)	502, 544
BstV1I	GCAGC	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	509, 598, 769
BstYI	RGATCY	3 cut(s)	509, 598, 769
BtsCI	GGATG	2 cut(s)	196, 280
BtsIMutI	CAGTG	3 cut(s)	290, 355, 468
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	2 cut(s)	146, 948
Cfr13I	GGNCC	2 cut(s)	406, 927
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	3 cut(s)	398, 437, 454
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	7 cut(s)	30, 150, 426, 519, 603, 789, 846
DpnI	GATC	5 cut(s)	84, 260, 511, 600, 771
DpnII	GATC	5 cut(s)	82, 258, 509, 598, 769
DraI	TTTAAA	1 cut(s)	732
Eam1104I	CTCTTC	4 cut(s)	100, 480, 581, 734
EarI	CTCTTC	4 cut(s)	100, 480, 581, 734
Ecl136II	GAGCTC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	2 cut(s)	406, 927
Eco53kI	GAGCTC	1 cut(s)	541
Eco57I	CTGAAG	3 cut(s)	492, 636, 855
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	2 cut(s)	406, 927
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	3 cut(s)	401, 440, 457
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	3 cut(s)	397, 436, 453
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	2 cut(s)	183, 287
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	3 cut(s)	21, 723, 839
GlaI	GCGC	2 cut(s)	145, 947
GluI	GCNGC	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	3 cut(s)	47, 54, 200
HhaI	GCGC	2 cut(s)	146, 948
Hin1II	CATG	3 cut(s)	401, 440, 457
Hin6I	GCGC	2 cut(s)	144, 946
HinP1I	GCGC	2 cut(s)	144, 946
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	605, 911
HinfI	GANTC	7 cut(s)	112, 192, 265, 515, 573, 611, 821
HpaII	CCGG	3 cut(s)	47, 54, 200
HphI	GGTGA	2 cut(s)	227, 428
Hpy166II	GTNNAC	2 cut(s)	316, 755
Hpy188I	TCNGA	9 cut(s)	31, 429, 449, 514, 520, 598, 706, 763, 874
Hpy188III	TCNNGA	5 cut(s)	200, 262, 398, 635, 654
Hpy8I	GTNNAC	2 cut(s)	316, 755
HpyAV	CCTTC	2 cut(s)	160, 457
HpyCH4III	ACNGT	2 cut(s)	294, 759
HpyCH4V	TGCA	2 cut(s)	338, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	7 cut(s)	30, 150, 426, 519, 603, 789, 846
Hsp92II	CATG	3 cut(s)	401, 440, 457
HspAI	GCGC	2 cut(s)	144, 946
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	82, 258, 509, 598, 769
LguI	GCTCTTC	1 cut(s)	734
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	856
MaeI	CTAG	3 cut(s)	21, 723, 839
MaeIII	GTNAC	2 cut(s)	101, 466
MalI	GATC	5 cut(s)	84, 260, 511, 600, 771
MboI	GATC	5 cut(s)	82, 258, 509, 598, 769
MboII	GAAGA	9 cut(s)	71, 87, 92, 497, 535, 568, 751, 896, 899
MflI	RGATCY	3 cut(s)	509, 598, 769
MhlI	GDGCHC	2 cut(s)	292, 543
MluCI	AATT	5 cut(s)	159, 236, 245, 430, 890
MlyI	GAGTC	4 cut(s)	106, 186, 567, 830
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	2 cut(s)	162, 731
MspI	CCGG	3 cut(s)	47, 54, 200
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	5 cut(s)	82, 258, 509, 598, 769
NlaIII	CATG	3 cut(s)	401, 440, 457
NmuCI	GTSAC	1 cut(s)	466
PagI	TCATGA	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	734
PfeI	GAWTC	3 cut(s)	265, 515, 611
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	4 cut(s)	106, 186, 567, 829
PpsI	GAGTC	4 cut(s)	106, 186, 567, 829
PpuMI	RGGWCCY	2 cut(s)	406, 927
Psp124BI	GAGCTC	1 cut(s)	543
Psp5II	RGGWCCY	2 cut(s)	406, 927
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	406, 927
PspPPI	RGGWCCY	2 cut(s)	406, 927
PsuI	RGATCY	3 cut(s)	509, 598, 769
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SacI	GAGCTC	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	734
SaqAI	TTAA	2 cut(s)	162, 731
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	5 cut(s)	82, 258, 509, 598, 769
Sau96I	GGNCC	2 cut(s)	406, 927
SchI	GAGTC	4 cut(s)	106, 186, 567, 830
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	292, 543
SfaNI	GCATC	1 cut(s)	856
SfcI	CTRYAG	2 cut(s)	502, 544
SinI	GGWCC	2 cut(s)	406, 927
SpeI	ACTAGT	1 cut(s)	722
Sse9I	AATT	5 cut(s)	159, 236, 245, 430, 890
SsiI	CCGC	1 cut(s)	619
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	3 cut(s)	21, 723, 839
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	294, 759
TaqI	TCGA	3 cut(s)	263, 367, 941
TasI	AATT	5 cut(s)	159, 236, 245, 430, 890
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	3 cut(s)	265, 515, 611
Tru1I	TTAA	2 cut(s)	162, 731
Tru9I	TTAA	2 cut(s)	162, 731
TscAI	CASTG	3 cut(s)	297, 355, 475
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	386, 453, 581, 816
TspRI	CASTG	3 cut(s)	297, 355, 475
VpaK11BI	GGWCC	2 cut(s)	406, 927
XapI	RAATTY	3 cut(s)	236, 430, 890
XspI	CTAG	3 cut(s)	21, 723, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.