Rmu_co8261701.1_g000001

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8261701.1
OG0010291
Physical Location & Seq
Reverse (-)
1 .. 546
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8261701.1_g000001.1.cds

Sequence Viewer

Length: 328 bp
atgggaaagagaaagagagctagggtttctgagcaaaagcaagcaccagaagccggagaagacgaacggccaatggacgaagatcacaacgcctcttcaagtaacaacaagactctctacgaggttcttggtgtggagagaagcgcctctcagcaggaaatcaagaaggcgtattataagttagcattgcgactccatccggataaaaatcctggtgatgaggaagctaaagagaaatttcagcaattacaaaaagtgatctcgattctcggggatgaggagaaacgagcactgtatgaccagactggttgtgttgacgatgatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

109

Amino Acids

12.42

Weight (kDa)

5.26

Isoelectric Point (pI)

59.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccIII TCCGGA 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 99
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 2 cut(s) 20, 227
AluI AGCT 2 cut(s) 20, 227
Alw21I GWGCWC 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 292
BccI CCATC 1 cut(s) 204
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 213
BfaI CTAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 196, 280
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 21, 164
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 2 cut(s) 54, 200
BslI CCNNNNNNNGG 1 cut(s) 53
BsnI GGCC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 292
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 2 cut(s) 82, 258
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 22, 163
BspEI TCCGGA 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 1 cut(s) 310
BssMI GATC 2 cut(s) 82, 258
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 30, 150
BstF5I GGATG 2 cut(s) 196, 280
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 2 cut(s) 85, 261
BstMBI GATC 2 cut(s) 82, 258
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 70
BtsCI GGATG 2 cut(s) 196, 280
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 146
CviJI RGCY 4 cut(s) 20, 53, 70, 227
CviKI_1 RGCY 4 cut(s) 20, 53, 70, 227
DdeI CTNAG 2 cut(s) 30, 150
DpnI GATC 2 cut(s) 84, 260
DpnII GATC 2 cut(s) 82, 258
EaeI YGGCCR 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 211
FaiI YATR 2 cut(s) 177, 297
FokI GGATG 2 cut(s) 183, 287
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 1 cut(s) 70
HapII CCGG 2 cut(s) 54, 200
HhaI GCGC 1 cut(s) 146
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 112, 192, 265
HpaII CCGG 2 cut(s) 54, 200
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 163, 200, 262
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 30, 150
HspAI GCGC 1 cut(s) 144
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 82, 258
LpnPI CCDG 8 cut(s) 60, 67, 140, 198, 213, 225, 291, 314
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 84, 260
MboI GATC 2 cut(s) 82, 258
MboII GAAGA 3 cut(s) 71, 87, 92
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 2 cut(s) 236, 245
MlyI GAGTC 2 cut(s) 106, 186
MnlI CCTC 5 cut(s) 103, 115, 157, 214, 271
MroI TCCGGA 1 cut(s) 199
MspI CCGG 2 cut(s) 54, 200
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 2 cut(s) 82, 258
PfeI GAWTC 1 cut(s) 265
PleI GAGTC 2 cut(s) 106, 186
PpsI GAGTC 2 cut(s) 106, 186
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
Sau3AI GATC 2 cut(s) 82, 258
SchI GAGTC 2 cut(s) 106, 186
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 292
SetI ASST 3 cut(s) 22, 126, 229
Sse9I AATT 2 cut(s) 236, 245
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 263
TasI AATT 2 cut(s) 236, 245
TfiI GAWTC 1 cut(s) 265
TscAI CASTG 1 cut(s) 297
TspRI CASTG 1 cut(s) 297
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.