Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010291

Physical Location & Seq

Genomic Coordinates Forward (+)

7640157 .. 7644818

Gene Structure 4662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1065200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGGAAAAGAAAGAAAGCTGGGGTTTCTGAGCAGAAGCAGCAACCCCCACCACAAGTCGAAGAAGAAGACGAACAGCAGGAACACAGCGACGAAGATCCCGACCCCCCAACTTCCACCAACAAGAAAAGCCTCTATGAGGTTCTTGGTGTGGAGAGAAGCGCTACTCAGCAGGAAATAAAGAAGGCGTATCATAAGTTAGCATTGCGATTGCATCCGGATAAGAATCCTGGTGATGAGGAAGCTAAAGAGAAGTTCCAGCAATTGCAAAAGGTGATATCGATTCTCGGCGATGGGGAGAAACGAGCGCTCTATGATGAGACGGGTTGCCTTGATGATGATGACCTTGCTGGTGATGTTGTTCAGAATCTGCAAGAATATTTCCGTGTCAGATATAAAAAGGTCACTGAAGCTGATATTGAAGAGTTTGAAGCAAACTATAGAGGGTCTGATTCTGAGAAGAAAGATTTGATTGAGCTGTATAGCCAGTACAAGGGGAATATGAACAGAGTGTTCTGTTCAATGATTTGTTCAGATCCTAAACTTGATTCACACCGTTTCAAGGATATTCTTGATGAGGCAATAGCAGCAGGAGAACTGAAATCAACCAAAGCCTACGTAAAATGGGCAAAGAAAGTATCGGAAACAAAACCTCCTACTAGCCCTTTAAGGCGGAAGAACAAGGCAAAGAAACAGACAGAAGATCTGTACGCAATCATATCTCAGCGCCGCAGTGAGAGGAAAAACCAGTCTGATTGTATGTTCTCTTCTCTAGTTTCCAGATACGGCGGGAGCACTGCTGCTTCAGAACCCACAGAAGAAGAATTTGAAGCTACACAGAAAAAACTTGAAAGAAAAAGGTCGTCCACAAAATCAAAGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

295

Amino Acids

33.7

Weight (kDa)

6.93

Isoelectric Point (pI)

60.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	45 - 106	1.1e-25	DnaJ domain
HTH_DNAJC9	PF23302	147 - 215	1.9e-26	DNAJC9 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12170 AT3G12170 AT5G06910
fragaria_vesca	FvH4_5g27800
malus_domestica	MD12G1065200.v1.1 MD14G1065200.v1.1
prunus_persica	Prupe.7G068800_v2.0.a1 Prupe.7G068800_v2.0.a1
pyrus_communis	pycom12g05700 pycom14g05310
rosa_chinensis	RchiOBHm_Chr3g0480921
rosa_laevigata	RLG00000023441
rosa_multiflora	Rmu_co8261701.1_g000001 Rmu_sc0006028.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400880
rosa_rugosa	Rorug03G0187700
rosa_samantha	Rh3AG239100 Rh3BG273300 Rh3CG268900 Rh3DG264900
rosa_wichuraiana	Rw3G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	3 cut(s)	673, 730, 789
AclWI	GGATC	2 cut(s)	92, 530
AcsI	RAATTY	1 cut(s)	824
AcuI	CTGAAG	2 cut(s)	429, 789
AfaI	GTAC	2 cut(s)	491, 710
AfeI	AGCGCT	3 cut(s)	163, 309, 881
AfiI	CCNNNNNNNGG	3 cut(s)	139, 493, 562
AgsI	TTSAA	6 cut(s)	422, 431, 522, 562, 830, 851
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	5 cut(s)	20, 245, 413, 478, 833
AluI	AGCT	5 cut(s)	20, 245, 413, 478, 833
Alw21I	GWGCWC	1 cut(s)	797
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	92, 530
AlwNI	CAGNNNCTG	1 cut(s)	370
Aor13HI	TCCGGA	1 cut(s)	217
Aor51HI	AGCGCT	3 cut(s)	163, 309, 881
ApeKI	GCWGC	3 cut(s)	40, 587, 800
ApoI	RAATTY	1 cut(s)	824
AspLEI	GCGC	4 cut(s)	164, 310, 729, 882
AsuHPI	GGTGA	3 cut(s)	245, 286, 365
BarI	GAAGNNNNNNTAC	2 cut(s)	751, 783
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	797
BbvI	GCAGC	3 cut(s)	52, 599, 787
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	802
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	3 cut(s)	660, 773, 883
BfmI	CTRYAG	1 cut(s)	439
BfoI	RGCGCY	4 cut(s)	165, 311, 730, 883
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	4 cut(s)	41, 588, 730, 801
BlsI	GCNGC	4 cut(s)	42, 589, 731, 802
Bme1390I	CCNGG	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	619
BsaBI	GATNNNNATC	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 493, 562
Bse1I	ACTGG	2 cut(s)	487, 748
Bse3DI	GCAATG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	281
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	139, 493, 562
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	4 cut(s)	21, 182, 447, 737
BseNI	ACTGG	2 cut(s)	487, 748
BseXI	GCAGC	3 cut(s)	52, 599, 787
BseYI	CCCAGC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	797
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	3 cut(s)	139, 493, 562
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	97, 535, 703
BspACI	CCGC	3 cut(s)	673, 730, 789
BspCNI	CTCAG	4 cut(s)	22, 181, 448, 736
BspDI	ATCGAT	1 cut(s)	281
BspEI	TCCGGA	1 cut(s)	217
BspPI	GGATC	2 cut(s)	92, 530
BsrDI	GCAATG	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	487, 748
BssMI	GATC	3 cut(s)	97, 535, 703
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	2 cut(s)	417, 772
BstBAI	YACGTR	1 cut(s)	619
BstDEI	CTNAG	4 cut(s)	30, 168, 456, 723
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	4 cut(s)	165, 311, 730, 883
BstHHI	GCGC	4 cut(s)	164, 310, 729, 882
BstKTI	GATC	3 cut(s)	100, 538, 706
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	3 cut(s)	97, 535, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 587
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	439
BstSNI	TACGTA	1 cut(s)	619
BstV1I	GCAGC	3 cut(s)	52, 599, 787
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	3 cut(s)	97, 535, 703
BstYI	RGATCY	3 cut(s)	97, 535, 703
Bsu15I	ATCGAT	1 cut(s)	281
BsuTUI	ATCGAT	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	2 cut(s)	739, 795
BtsIMutI	CAGTG	3 cut(s)	405, 739, 795
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	4 cut(s)	164, 310, 729, 882
ClaI	ATCGAT	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	490, 709
CviJI	RGCY	9 cut(s)	20, 132, 245, 413, 478, 486, 614, 663, 833
CviKI_1	RGCY	9 cut(s)	20, 132, 245, 413, 478, 486, 614, 663, 833
CviQI	GTAC	2 cut(s)	490, 709
DdeI	CTNAG	4 cut(s)	30, 168, 456, 723
DpnI	GATC	3 cut(s)	99, 537, 705
DpnII	GATC	3 cut(s)	97, 535, 703
Eam1104I	CTCTTC	2 cut(s)	417, 772
EarI	CTCTTC	2 cut(s)	417, 772
EciI	GGCGGA	1 cut(s)	688
Eco105I	TACGTA	1 cut(s)	619
Eco32I	GATATC	1 cut(s)	279
Eco47III	AGCGCT	3 cut(s)	163, 309, 881
Eco57I	CTGAAG	2 cut(s)	429, 789
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	314
FaiI	YATR	9 cut(s)	138, 195, 315, 396, 441, 483, 503, 719, 761
FauI	CCCGC	1 cut(s)	782
Fnu4HI	GCNGC	4 cut(s)	41, 588, 730, 801
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	4 cut(s)	41, 588, 730, 801
FspBI	CTAG	3 cut(s)	660, 773, 883
GlaI	GCGC	4 cut(s)	163, 309, 728, 881
GluI	GCNGC	4 cut(s)	41, 588, 730, 801
GsaI	CCCAGC	1 cut(s)	24
HaeII	RGCGCY	4 cut(s)	165, 311, 730, 883
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	4 cut(s)	164, 310, 729, 882
Hin6I	GCGC	4 cut(s)	162, 308, 727, 880
HinP1I	GCGC	4 cut(s)	162, 308, 727, 880
HinfI	GANTC	5 cut(s)	226, 283, 367, 452, 548
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	3 cut(s)	245, 286, 365
Hpy166II	GTNNAC	1 cut(s)	867
Hpy188I	TCNGA	9 cut(s)	31, 366, 392, 451, 457, 535, 643, 754, 808
Hpy188III	TCNNGA	4 cut(s)	101, 218, 572, 780
Hpy8I	GTNNAC	1 cut(s)	867
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	3 cut(s)	214, 268, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 587
HpyF3I	CTNAG	4 cut(s)	30, 168, 456, 723
HpySE526I	ACGT	1 cut(s)	618
HspAI	GCGC	4 cut(s)	162, 308, 727, 880
Kpn2I	TCCGGA	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	97, 535, 703
LmnI	GCTCC	1 cut(s)	792
Lsp1109I	GCAGC	3 cut(s)	52, 599, 787
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	660, 773, 883
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	99, 537, 705
MboI	GATC	3 cut(s)	97, 535, 703
MfeI	CAATTG	1 cut(s)	263
MflI	RGATCY	3 cut(s)	97, 535, 703
MhlI	GDGCHC	1 cut(s)	797
MluCI	AATT	2 cut(s)	263, 824
MnlI	CCTC	7 cut(s)	133, 143, 232, 437, 571, 663, 732
MroI	TCCGGA	1 cut(s)	217
MseI	TTAA	1 cut(s)	668
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	40, 587
NdeII	GATC	3 cut(s)	97, 535, 703
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	5 cut(s)	226, 283, 367, 452, 548
PkrI	GCNGC	4 cut(s)	42, 589, 731, 802
Ppu21I	YACGTR	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	3 cut(s)	97, 535, 703
RsaI	GTAC	2 cut(s)	491, 710
RsaNI	GTAC	2 cut(s)	490, 709
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	4 cut(s)	41, 588, 730, 801
Sau3AI	GATC	3 cut(s)	97, 535, 703
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	797
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	439
SnaBI	TACGTA	1 cut(s)	619
Sse9I	AATT	2 cut(s)	263, 824
SsiI	CCGC	3 cut(s)	673, 730, 789
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	3 cut(s)	660, 773, 883
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	2 cut(s)	60, 281
TasI	AATT	2 cut(s)	263, 824
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	732
TfiI	GAWTC	5 cut(s)	226, 283, 367, 452, 548
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	3 cut(s)	412, 739, 802
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	3 cut(s)	40, 587, 800
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	3 cut(s)	412, 739, 802
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	824
XspI	CTAG	3 cut(s)	660, 773, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.