Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010291

Physical Location & Seq

Genomic Coordinates Forward (+)

26664773 .. 26667299

Gene Structure 2527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG273300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGAAAGAGAAAGAGAGCTAGGGTTTCTGAGCAAAAGCAAGCACCAGAAGCCGGAGAAGACGAACGGCCAATGGACGAAGATCACAACGCCTCTTCTTCAAGTAACAACAAGACTCTCTACGAGGTTCTTGGTGTGGAGAGAAGCGCCTCTCAGCAGGAAATCAAGAAGGCGTATTATAAGTTAGCATTGCGACTCCATCCGGATAAAAATCCTGGTGATGAGGAAGCTAAAGAGAAATTTCAGCAATTACAAAAAGTGATCTCGATTCTCGGGGATGAGGAGAAACGAGCACTGTATGACCAGACTGGTTGCGTTGACGATGATGACCTTGCTGGTGATGTTGCTCAGAATTTGCATGAATATTTCCGAGCCATGTATAAGAAGCTCACTGAAGCAGACATTGAAGAGTTTGAAGCAAACTATAGGGGATCTGATTCTGAGAAGAAAGATTTGATTGAGCTCTTCAGCAAGTACAAGGGCAATATGAACAGACTCTTCTGTTCAATGCTTTGTTCAGATCCTAAGCTTGATTCACACCGCTTTAAGGACATTCTTGATGAGGCAATAGCTTCAGGAGAACTGAAATCAACCAAAGCCTACACAAAATGGGCAAAGAAAGTATCTGAAACAAAACCTCCTACTAGTCCTTTAAAGAGGAAGAGCAAGTCAAGTAAACAGTCAGAACCAGATCTGTATGCCATCATATCTCAGCGTAGGAATGAAAGGAAAGACCAGTTTGAGTCTATGTTCTCTAACCTAGTCTCTAAGTATGGCGGGAGTAAGGATGCTTCAGAACCCACAGAAGAAGAATTTGAGGCTACACAGAAAAAGCTTGAAAGCAAAAGGTCCTCCAGAAAATCAAAGCGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

291

Amino Acids

33.39

Weight (kDa)

8.45

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	40 - 101	1.5e-26	DnaJ domain
HTH_DNAJC9	PF23302	142 - 210	5.3e-26	DNAJC9 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12170 AT3G12170 AT5G06910
fragaria_vesca	FvH4_5g27800
malus_domestica	MD12G1065200.v1.1 MD14G1065200.v1.1
prunus_persica	Prupe.7G068800_v2.0.a1 Prupe.7G068800_v2.0.a1
pyrus_communis	pycom12g05700 pycom14g05310
rosa_chinensis	RchiOBHm_Chr3g0480921
rosa_laevigata	RLG00000023441
rosa_multiflora	Rmu_co8261701.1_g000001 Rmu_sc0006028.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400880
rosa_rugosa	Rorug03G0187700
rosa_samantha	Rh3AG239100 Rh3BG273300 Rh3CG268900 Rh3DG264900
rosa_wichuraiana	Rw3G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	2 cut(s)	541, 777
AclWI	GGATC	2 cut(s)	439, 515
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	3 cut(s)	239, 352, 812
AcuI	CTGAAG	4 cut(s)	414, 451, 558, 777
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	53, 547
AgsI	TTSAA	5 cut(s)	102, 407, 416, 507, 839
AhlI	ACTAGT	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	7 cut(s)	20, 230, 388, 463, 529, 572, 835
AluI	AGCT	7 cut(s)	20, 230, 388, 463, 529, 572, 835
Alw21I	GWGCWC	2 cut(s)	295, 465
Alw26I	GTCTC	1 cut(s)	769
AlwI	GGATC	2 cut(s)	439, 515
Ama87I	CYCGRG	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	1 cut(s)	68
ApoI	RAATTY	3 cut(s)	239, 352, 812
AspLEI	GCGC	2 cut(s)	149, 870
AspS9I	GGNCC	1 cut(s)	849
AsuHPI	GGTGA	2 cut(s)	230, 350
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	849
BanII	GRGCYC	1 cut(s)	465
BarI	GAAGNNNNNNTAC	2 cut(s)	775, 807
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	295, 465
BccI	CCATC	2 cut(s)	207, 710
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	769
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	3 cut(s)	21, 645, 761
BfmI	CTRYAG	1 cut(s)	424
BfoI	RGCGCY	1 cut(s)	150
BglII	AGATCT	1 cut(s)	691
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	849
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	849
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	778
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	838
Bpu10I	CCTNAGC	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 547
Bse1I	ACTGG	2 cut(s)	313, 736
Bse3DI	GCAATG	1 cut(s)	188
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	216
BseGI	GGATG	3 cut(s)	199, 283, 793
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	53, 547
BseMI	GCAATG	1 cut(s)	188
BseMII	CTCAG	5 cut(s)	21, 167, 362, 432, 725
BseNI	ACTGG	2 cut(s)	313, 736
BseRI	GAGGAG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	295, 465
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	54, 203
BslI	CCNNNNNNNGG	2 cut(s)	53, 547
BsmAI	GTCTC	1 cut(s)	769
BsnI	GGCC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	295, 465
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	5 cut(s)	82, 261, 431, 520, 691
BspACI	CCGC	2 cut(s)	541, 777
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	5 cut(s)	22, 166, 361, 433, 724
BspEI	TCCGGA	1 cut(s)	202
BspPI	GGATC	2 cut(s)	439, 515
BspQI	GCTCTTC	2 cut(s)	470, 656
BsrDI	GCAATG	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	313, 736
BssMI	GATC	5 cut(s)	82, 261, 431, 520, 691
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	297, 681
Bst6I	CTCTTC	5 cut(s)	100, 402, 470, 503, 656
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	7 cut(s)	30, 153, 348, 441, 525, 711, 768
BstF5I	GGATG	3 cut(s)	199, 283, 793
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 870
BstKTI	GATC	5 cut(s)	85, 264, 434, 523, 694
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	5 cut(s)	82, 261, 431, 520, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	431, 520, 691
BstYI	RGATCY	3 cut(s)	431, 520, 691
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	199, 283, 793
BtsIMutI	CAGTG	2 cut(s)	293, 390
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	2 cut(s)	149, 870
Cfr13I	GGNCC	1 cut(s)	849
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	2 cut(s)	359, 376
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	7 cut(s)	30, 153, 348, 441, 525, 711, 768
DpnI	GATC	5 cut(s)	84, 263, 433, 522, 693
DpnII	GATC	5 cut(s)	82, 261, 431, 520, 691
DraI	TTTAAA	1 cut(s)	654
EaeI	YGGCCR	1 cut(s)	68
Eam1104I	CTCTTC	5 cut(s)	100, 402, 470, 503, 656
EarI	CTCTTC	5 cut(s)	100, 402, 470, 503, 656
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	849
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	4 cut(s)	414, 451, 558, 777
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	849
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	465
FaeI	CATG	2 cut(s)	362, 379
FatI	CATG	2 cut(s)	358, 375
FauI	CCCGC	1 cut(s)	770
FokI	GGATG	3 cut(s)	186, 290, 800
FriOI	GRGCYC	1 cut(s)	465
FspBI	CTAG	3 cut(s)	21, 645, 761
GlaI	GCGC	2 cut(s)	148, 869
GsuI	CTGGAG	1 cut(s)	838
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	2 cut(s)	54, 203
HhaI	GCGC	2 cut(s)	149, 870
Hin1II	CATG	2 cut(s)	362, 379
Hin6I	GCGC	2 cut(s)	147, 868
HinP1I	GCGC	2 cut(s)	147, 868
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	2 cut(s)	527, 833
HinfI	GANTC	7 cut(s)	115, 195, 268, 437, 495, 533, 743
HpaII	CCGG	2 cut(s)	54, 203
HphI	GGTGA	2 cut(s)	230, 350
Hpy166II	GTNNAC	2 cut(s)	319, 677
Hpy188I	TCNGA	9 cut(s)	31, 351, 371, 436, 442, 520, 628, 685, 796
Hpy188III	TCNNGA	6 cut(s)	166, 203, 265, 557, 576, 855
Hpy8I	GTNNAC	2 cut(s)	319, 677
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	2 cut(s)	297, 681
HpyCH4V	TGCA	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	7 cut(s)	30, 153, 348, 441, 525, 711, 768
Hsp92II	CATG	2 cut(s)	362, 379
HspAI	GCGC	2 cut(s)	147, 868
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	82, 261, 431, 520, 691
LguI	GCTCTTC	2 cut(s)	470, 656
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	3 cut(s)	21, 645, 761
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	5 cut(s)	84, 263, 433, 522, 693
MboI	GATC	5 cut(s)	82, 261, 431, 520, 691
MflI	RGATCY	3 cut(s)	431, 520, 691
MhlI	GDGCHC	2 cut(s)	295, 465
MluCI	AATT	4 cut(s)	239, 248, 352, 812
MlyI	GAGTC	4 cut(s)	109, 189, 489, 752
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	2 cut(s)	546, 653
MspI	CCGG	2 cut(s)	54, 203
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	5 cut(s)	82, 261, 431, 520, 691
NlaIII	CATG	2 cut(s)	362, 379
PciSI	GCTCTTC	2 cut(s)	470, 656
PfeI	GAWTC	3 cut(s)	268, 437, 533
PleI	GAGTC	4 cut(s)	109, 189, 489, 751
PpsI	GAGTC	4 cut(s)	109, 189, 489, 751
PpuMI	RGGWCCY	1 cut(s)	849
PsiI	TTATAA	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	849
PspPPI	RGGWCCY	1 cut(s)	849
PsuI	RGATCY	3 cut(s)	431, 520, 691
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	1 cut(s)	465
SapI	GCTCTTC	2 cut(s)	470, 656
SaqAI	TTAA	2 cut(s)	546, 653
Sau3AI	GATC	5 cut(s)	82, 261, 431, 520, 691
Sau96I	GGNCC	1 cut(s)	849
SchI	GAGTC	4 cut(s)	109, 189, 489, 752
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	295, 465
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	849
SpeI	ACTAGT	1 cut(s)	644
Sse9I	AATT	4 cut(s)	239, 248, 352, 812
SsiI	CCGC	2 cut(s)	541, 777
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	3 cut(s)	21, 645, 761
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	297, 681
TaqI	TCGA	1 cut(s)	266
TasI	AATT	4 cut(s)	239, 248, 352, 812
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	3 cut(s)	268, 437, 533
Tru1I	TTAA	2 cut(s)	546, 653
Tru9I	TTAA	2 cut(s)	546, 653
TscAI	CASTG	2 cut(s)	300, 397
TspDTI	ATGAA	3 cut(s)	375, 503, 738
TspRI	CASTG	2 cut(s)	300, 397
VpaK11BI	GGWCC	1 cut(s)	849
XapI	RAATTY	3 cut(s)	239, 352, 812
XspI	CTAG	3 cut(s)	21, 645, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.