Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010291

Physical Location & Seq

Genomic Coordinates Forward (+)

5637453 .. 5640055

Gene Structure 2603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05700.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGGAAGAGAAAGAAAGCTGGGGTTTCTGAGCAGAACCAGCAACCCCCACCACAAGTCGAAGAAGAAGACGAACAGCAGGAACACAGCGACGAAGATCCCGACCCCCCAACTTCCACCAACGAGAAAAGCCTCTATGAGGTTCTTGGTGTGGAGAGAAGCGCTACTCAGCAGGAAATAAAGAAGGCGTATCATAAGTTAGCGTTGCGATTGCATCCGGATAAGAATCCCGGTGATGAGGAAGCTAAAGAGAAGTTCCAGCAATTGCAAAAGGTGATATCGATTCTCGGGGATGAGGAGAAACGAGCGCTCTATGATGAGACGGGTTGCCTTGACGATGATGACCTTGCTGGTGATATTGTTCAGAATCTGCATGAATATTTCCGCGTCATATATAAAAAGGTCACTGAAGCTGATATTGAAGAGTTTGAAGCAAACTATAGAGGGTCTGATTCTGAGAAGAAAGATTTGATTGAGCTGTATAGCCAGTGCAAGGGGAATATGAACAGAGTGTTCTGTTCAATGATTTGTTCAGATCCTAAACTCGATTCACACCGTTTCAAGGATATTCTTGATGAGGCAATAGCTGCAGGAGAACTGAAATCAACCAAAGGCTACCTAAAATGGGCAAAGAAAGTATCGGAAACAAAACCTCCTACTAGCCCTTTAAGGCGGAAGAACAAGGCAAAGAAACAGACAGACGATCTGTATGCAATCATATCTCAGCGCCGCAGTGAGAGGAAAAACCAATTTGATTGTATGTTCTCTTCTCTAGTTTCCAGATACGGCGGGAACTCTGCTGCTTCAGAACCCACGGAAGAAGAATTTGAAGCTACACAGAAAAAACTTGAAAGAAAAAGGTCGTCCACAAAATCAAAGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

295

Amino Acids

33.74

Weight (kDa)

5.77

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12170 AT3G12170 AT5G06910
fragaria_vesca	FvH4_5g27800
malus_domestica	MD12G1065200.v1.1 MD14G1065200.v1.1
prunus_persica	Prupe.7G068800_v2.0.a1 Prupe.7G068800_v2.0.a1
pyrus_communis	pycom12g05700 pycom14g05310
rosa_chinensis	RchiOBHm_Chr3g0480921
rosa_laevigata	RLG00000023441
rosa_multiflora	Rmu_co8261701.1_g000001 Rmu_sc0006028.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400880
rosa_rugosa	Rorug03G0187700
rosa_samantha	Rh3AG239100 Rh3BG273300 Rh3CG268900 Rh3DG264900
rosa_wichuraiana	Rw3G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	387
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	4 cut(s)	385, 673, 730, 789
AclWI	GGATC	2 cut(s)	92, 530
AcsI	RAATTY	1 cut(s)	824
AcuI	CTGAAG	2 cut(s)	429, 789
AfeI	AGCGCT	3 cut(s)	163, 309, 881
AfiI	CCNNNNNNNGG	4 cut(s)	139, 493, 562, 625
AgsI	TTSAA	6 cut(s)	422, 431, 522, 562, 830, 851
AluBI	AGCT	6 cut(s)	20, 245, 413, 478, 587, 833
AluI	AGCT	6 cut(s)	20, 245, 413, 478, 587, 833
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	92, 530
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	217
Aor51HI	AGCGCT	3 cut(s)	163, 309, 881
ApeKI	GCWGC	2 cut(s)	587, 800
ApoI	RAATTY	1 cut(s)	824
AspLEI	GCGC	4 cut(s)	164, 310, 729, 882
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	3 cut(s)	245, 286, 365
AvaI	CYCGRG	1 cut(s)	287
BarI	GAAGNNNNNNTAC	2 cut(s)	751, 783
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	574, 787
BceAI	ACGGC	1 cut(s)	802
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	3 cut(s)	660, 773, 883
BfmI	CTRYAG	2 cut(s)	439, 588
BfoI	RGCGCY	4 cut(s)	165, 311, 730, 883
BisI	GCNGC	3 cut(s)	588, 730, 801
BlsI	GCNGC	3 cut(s)	589, 731, 802
Bme1390I	CCNGG	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	813
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 493, 562, 625
Bse1I	ACTGG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	813
BseGI	GGATG	2 cut(s)	214, 298
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	4 cut(s)	139, 493, 562, 625
BseMII	CTCAG	4 cut(s)	21, 182, 447, 737
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	574, 787
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	387
BshVI	ATCGAT	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	218, 231
BslI	CCNNNNNNNGG	4 cut(s)	139, 493, 562, 625
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	97, 535, 703
BspACI	CCGC	4 cut(s)	385, 673, 730, 789
BspCNI	CTCAG	4 cut(s)	22, 181, 448, 736
BspDI	ATCGAT	1 cut(s)	281
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	387
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	2 cut(s)	92, 530
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	813
BssMI	GATC	3 cut(s)	97, 535, 703
Bst4CI	ACNGT	1 cut(s)	557
Bst6I	CTCTTC	3 cut(s)	2, 417, 772
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstDEI	CTNAG	4 cut(s)	30, 168, 456, 723
BstDSI	CCRYGG	1 cut(s)	813
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	214, 298
BstFNI	CGCG	1 cut(s)	387
BstH2I	RGCGCY	4 cut(s)	165, 311, 730, 883
BstHHI	GCGC	4 cut(s)	164, 310, 729, 882
BstKTI	GATC	3 cut(s)	100, 538, 706
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	3 cut(s)	97, 535, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 587
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	2 cut(s)	439, 588
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	574, 787
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	97, 535
BstYI	RGATCY	2 cut(s)	97, 535
Bsu15I	ATCGAT	1 cut(s)	281
BsuTUI	ATCGAT	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	813
BtsCI	GGATG	2 cut(s)	214, 298
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	3 cut(s)	405, 494, 739
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	4 cut(s)	164, 310, 729, 882
ClaI	ATCGAT	1 cut(s)	281
CseI	GACGC	1 cut(s)	376
CviAII	CATG	1 cut(s)	374
DdeI	CTNAG	4 cut(s)	30, 168, 456, 723
DpnI	GATC	3 cut(s)	99, 537, 705
DpnII	GATC	3 cut(s)	97, 535, 703
Eam1104I	CTCTTC	3 cut(s)	2, 417, 772
EarI	CTCTTC	3 cut(s)	2, 417, 772
EciI	GGCGGA	1 cut(s)	688
Eco32I	GATATC	1 cut(s)	279
Eco47III	AGCGCT	3 cut(s)	163, 309, 881
Eco57I	CTGAAG	2 cut(s)	429, 789
Eco88I	CYCGRG	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	1 cut(s)	377
FatI	CATG	1 cut(s)	373
FauI	CCCGC	1 cut(s)	782
Fnu4HI	GCNGC	3 cut(s)	588, 730, 801
FokI	GGATG	2 cut(s)	201, 305
Fsp4HI	GCNGC	3 cut(s)	588, 730, 801
FspBI	CTAG	3 cut(s)	660, 773, 883
GlaI	GCGC	4 cut(s)	163, 309, 728, 881
GluI	GCNGC	3 cut(s)	588, 730, 801
GsaI	CCCAGC	1 cut(s)	24
HaeII	RGCGCY	4 cut(s)	165, 311, 730, 883
HapII	CCGG	2 cut(s)	218, 231
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	4 cut(s)	164, 310, 729, 882
Hin1II	CATG	1 cut(s)	377
Hin6I	GCGC	4 cut(s)	162, 308, 727, 880
HinP1I	GCGC	4 cut(s)	162, 308, 727, 880
HinfI	GANTC	5 cut(s)	226, 283, 367, 452, 548
HpaII	CCGG	2 cut(s)	218, 231
HphI	GGTGA	3 cut(s)	245, 286, 365
Hpy166II	GTNNAC	1 cut(s)	867
Hpy188I	TCNGA	7 cut(s)	31, 366, 451, 457, 535, 643, 808
Hpy188III	TCNNGA	4 cut(s)	101, 218, 572, 780
Hpy8I	GTNNAC	1 cut(s)	867
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4V	TGCA	6 cut(s)	214, 268, 373, 492, 590, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 587
HpyF3I	CTNAG	4 cut(s)	30, 168, 456, 723
Hsp92II	CATG	1 cut(s)	377
HspAI	GCGC	4 cut(s)	162, 308, 727, 880
Kpn2I	TCCGGA	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	97, 535, 703
Lsp1109I	GCAGC	2 cut(s)	574, 787
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	660, 773, 883
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	99, 537, 705
MboI	GATC	3 cut(s)	97, 535, 703
MfeI	CAATTG	1 cut(s)	263
MflI	RGATCY	2 cut(s)	97, 535
MluCI	AATT	3 cut(s)	263, 749, 824
MnlI	CCTC	8 cut(s)	133, 143, 232, 289, 437, 571, 663, 732
MroI	TCCGGA	1 cut(s)	217
MseI	TTAA	1 cut(s)	668
MspI	CCGG	2 cut(s)	218, 231
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	40, 587
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	97, 535, 703
NlaIII	CATG	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	5 cut(s)	226, 283, 367, 452, 548
PkrI	GCNGC	3 cut(s)	589, 731, 802
PspFI	CCCAGC	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	2 cut(s)	97, 535
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	3 cut(s)	588, 730, 801
Sau3AI	GATC	3 cut(s)	97, 535, 703
ScrFI	CCNGG	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	439, 588
Sse9I	AATT	3 cut(s)	263, 749, 824
SsiI	CCGC	4 cut(s)	385, 673, 730, 789
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	3 cut(s)	660, 773, 883
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	557
TaqI	TCGA	3 cut(s)	60, 281, 546
TasI	AATT	3 cut(s)	263, 749, 824
TauI	GCSGC	1 cut(s)	732
TfiI	GAWTC	5 cut(s)	226, 283, 367, 452, 548
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	3 cut(s)	412, 494, 739
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	587, 800
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	2 cut(s)	390, 518
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	3 cut(s)	412, 494, 739
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	824
XspI	CTAG	3 cut(s)	660, 773, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.