Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010291

Physical Location & Seq

Genomic Coordinates Forward (+)

2140400 .. 2142679

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGTAGGAAAAAGAAATCTAGGGCTTCGACAACCGAAGAAGATGAGATTGAGATGGATAATGCTGGCCCATCCTCTGAGACAAGTCTTTACGAGGTTCTTGGAGTTGAAAGAAGAGCCACTTCACAGGAAATAAGAAAAGCATACCATAAGTTGGCATTGAAGCTTCACCCTGATAAAAATCAGGATGATAAGGAAGCTAAAGACAAGTTCCAGCAGCTGCAAAAAGTGATATCAATTCTTGGTGATGAAGAGAAAAGGGCAGTCTATGATCAAACTGGCTCAATTGATGATGCTGATATTCCTGGAGATGCGTTTGAGAATTTGCGGGATTTCTTCCGGGACATGTATAAGAAGGTCAACGAAGCTGATATTGAAGAGTTTGAGGCAAACTACAGGGGATCTGAGTCAGAGAAGAAAGACTTGCTTGAGCTTTTCAACAAGTTTAAGGGTAAAATGAACAGGCTATTCTGCTCAATGCTTTGCTCGGACCCCAAGCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATTGCAGCAGGAGAAGTGAAGTCAAGCAAGGCATATGAGAAATGGGCAAATAAAATTTCAGAAACGAAACCGCCCACCAGTCCATTGAGGAAGAGGAAGAAGAAGAAGTCAGCAGCAAAGGATTCAGAGACAGATCTTTGCTTGATGATTGCGAAACGACAAGAGGAGAGGAAAGGGAAGGTGGACTCGATGTTTTCATCACTTATCTCTAGGTATGGTGGTGATGCGGAAGCAGAGCCCACTGAAGAAGAATTTGAAGCTGCCCAGAGAAGGATTGAAAGCAAAAGAAAACCATCCAAGAAGTCTAGAGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

284

Amino Acids

32.57

Weight (kDa)

8.47

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	30 - 91	3.1e-25	DnaJ domain
HTH_DNAJC9	PF23302	132 - 199	2.4e-24	DNAJC9 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12170 AT3G12170 AT5G06910
fragaria_vesca	FvH4_5g27800
malus_domestica	MD12G1065200.v1.1 MD14G1065200.v1.1
prunus_persica	Prupe.7G068800_v2.0.a1 Prupe.7G068800_v2.0.a1
pyrus_communis	pycom12g05700 pycom14g05310
rosa_chinensis	RchiOBHm_Chr3g0480921
rosa_laevigata	RLG00000023441
rosa_multiflora	Rmu_co8261701.1_g000001 Rmu_sc0006028.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400880
rosa_rugosa	Rorug03G0187700
rosa_samantha	Rh3AG239100 Rh3BG273300 Rh3CG268900 Rh3DG264900
rosa_wichuraiana	Rw3G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AciI	CCGC	3 cut(s)	328, 608, 764
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	3 cut(s)	322, 591, 788
AcuI	CTGAAG	1 cut(s)	801
AfiI	CCNNNNNNNGG	2 cut(s)	154, 807
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	7 cut(s)	110, 163, 377, 439, 517, 794, 815
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	7 cut(s)	166, 200, 220, 368, 433, 499, 797
AluI	AGCT	7 cut(s)	166, 200, 220, 368, 433, 499, 797
Alw26I	GTCTC	2 cut(s)	74, 659
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	220
AoxI	GGCC	2 cut(s)	67, 534
ApeKI	GCWGC	5 cut(s)	217, 220, 542, 650, 797
ApoI	RAATTY	3 cut(s)	322, 591, 788
AspS9I	GGNCC	2 cut(s)	68, 490
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	3 cut(s)	161, 257, 770
AvaII	GGWCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	777
BbvI	GCAGC	5 cut(s)	207, 229, 554, 662, 784
BccI	CCATC	3 cut(s)	49, 79, 838
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	74, 659
BfaI	CTAG	3 cut(s)	21, 747, 843
BfmI	CTRYAG	1 cut(s)	394
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	5 cut(s)	218, 221, 543, 651, 798
BlsI	GCNGC	5 cut(s)	219, 222, 544, 652, 799
Bme1390I	CCNGG	2 cut(s)	306, 341
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	68, 490
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	306, 341
BmsI	GCATC	3 cut(s)	283, 301, 751
BpmI	CTGGAG	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 807
Bse1I	ACTGG	2 cut(s)	283, 615
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	306
BseGI	GGATG	3 cut(s)	71, 193, 830
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	154, 807
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	69, 396
BseNI	ACTGG	2 cut(s)	283, 615
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	5 cut(s)	207, 229, 554, 662, 784
BshFI	GGCC	2 cut(s)	69, 536
BsiSI	CCGG	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	154, 807
BsmAI	GTCTC	2 cut(s)	74, 659
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	69, 536
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp143I	GATC	3 cut(s)	271, 401, 670
BspACI	CCGC	3 cut(s)	328, 608, 764
BspANI	GGCC	2 cut(s)	69, 536
BspCNI	CTCAG	2 cut(s)	70, 397
BspLI	GGNNCC	1 cut(s)	492
BspPI	GGATC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	283, 615
BssMI	GATC	3 cut(s)	271, 401, 670
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	4 cut(s)	109, 246, 372, 623
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	78, 405
BstF5I	GGATG	3 cut(s)	71, 193, 830
BstKTI	GATC	3 cut(s)	274, 404, 673
BstMAI	GTCTC	2 cut(s)	74, 659
BstMBI	GATC	3 cut(s)	271, 401, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	2 cut(s)	349, 526
BstSCI	CCNGG	2 cut(s)	304, 339
BstSFI	CTRYAG	1 cut(s)	394
BstV1I	GCAGC	5 cut(s)	207, 229, 554, 662, 784
BstX2I	RGATCY	2 cut(s)	401, 670
BstYI	RGATCY	2 cut(s)	401, 670
BsuRI	GGCC	2 cut(s)	69, 536
BtsCI	GGATG	3 cut(s)	71, 193, 830
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	1 cut(s)	67
CaiI	CAGNNNCTG	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	68, 490
CviAII	CATG	2 cut(s)	346, 523
DdeI	CTNAG	2 cut(s)	78, 405
DpnI	GATC	3 cut(s)	273, 403, 672
DpnII	GATC	3 cut(s)	271, 401, 670
Eam1104I	CTCTTC	4 cut(s)	109, 246, 372, 623
EarI	CTCTTC	4 cut(s)	109, 246, 372, 623
Eco24I	GRGCYC	1 cut(s)	777
Eco32I	GATATC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	801
EcoRII	CCWGG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	777
FaeI	CATG	2 cut(s)	349, 526
FaiI	YATR	9 cut(s)	145, 150, 270, 347, 351, 524, 571, 573, 753
FalI	AAGNNNNNCTT	8 cut(s)	106, 138, 407, 439, 411, 443, 510, 542
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	2 cut(s)	345, 522
FauI	CCCGC	1 cut(s)	321
FauNDI	CATATG	1 cut(s)	571
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	5 cut(s)	218, 221, 543, 651, 798
FokI	GGATG	3 cut(s)	58, 200, 817
FriOI	GRGCYC	1 cut(s)	777
Fsp4HI	GCNGC	5 cut(s)	218, 221, 543, 651, 798
FspBI	CTAG	3 cut(s)	21, 747, 843
GluI	GCNGC	5 cut(s)	218, 221, 543, 651, 798
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	69, 536
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	2 cut(s)	349, 526
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	2 cut(s)	164, 497
HinfI	GANTC	4 cut(s)	407, 503, 659, 722
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	3 cut(s)	161, 257, 770
Hpy166II	GTNNAC	2 cut(s)	361, 721
Hpy188I	TCNGA	6 cut(s)	79, 406, 412, 490, 598, 664
Hpy188III	TCNNGA	2 cut(s)	185, 843
Hpy8I	GTNNAC	2 cut(s)	361, 721
HpyAV	CCTTC	3 cut(s)	349, 709, 801
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	2 cut(s)	223, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	78, 405
Hsp92II	CATG	2 cut(s)	349, 526
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	271, 401, 670
LguI	GCTCTTC	1 cut(s)	109
Lsp1109I	GCAGC	5 cut(s)	207, 229, 554, 662, 784
LweI	GCATC	3 cut(s)	283, 301, 751
MaeI	CTAG	3 cut(s)	21, 747, 843
MalI	GATC	3 cut(s)	273, 403, 672
MboI	GATC	3 cut(s)	271, 401, 670
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	2 cut(s)	401, 670
MhlI	GDGCHC	1 cut(s)	777
MluCI	AATT	5 cut(s)	237, 285, 322, 591, 788
MlyI	GAGTC	2 cut(s)	416, 716
MnlI	CCTC	9 cut(s)	85, 88, 379, 526, 618, 624, 694, 699, 839
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	220
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	2 cut(s)	306, 341
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	341
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	3 cut(s)	271, 401, 670
NlaIII	CATG	2 cut(s)	349, 526
NlaIV	GGNNCC	1 cut(s)	492
NspI	RCATGY	2 cut(s)	349, 526
PciI	ACATGT	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	503, 659
PflMI	CCANNNNNTGG	1 cut(s)	154
PfoI	TCCNGGA	2 cut(s)	304, 339
PkrI	GCNGC	5 cut(s)	219, 222, 544, 652, 799
PleI	GAGTC	2 cut(s)	415, 716
PpsI	GAGTC	2 cut(s)	415, 716
PscI	ACATGT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	2 cut(s)	68, 490
PstNI	CAGNNNCTG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	401, 670
PvuII	CAGCTG	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	5 cut(s)	218, 221, 543, 651, 798
Sau3AI	GATC	3 cut(s)	271, 401, 670
Sau96I	GGNCC	2 cut(s)	68, 490
SchI	GAGTC	2 cut(s)	416, 716
ScrFI	CCNGG	2 cut(s)	306, 341
SduI	GDGCHC	1 cut(s)	777
SfaNI	GCATC	3 cut(s)	283, 301, 751
SfcI	CTRYAG	1 cut(s)	394
SinI	GGWCC	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	5 cut(s)	237, 285, 322, 591, 788
SsiI	CCGC	3 cut(s)	328, 608, 764
SspMI	CTAG	3 cut(s)	21, 747, 843
StyD4I	CCNGG	2 cut(s)	304, 339
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	2 cut(s)	29, 725
TasI	AATT	5 cut(s)	237, 285, 322, 591, 788
TfiI	GAWTC	2 cut(s)	503, 659
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	784
TseI	GCWGC	5 cut(s)	217, 220, 542, 650, 797
TspDTI	ATGAA	3 cut(s)	264, 473, 723
TspRI	CASTG	1 cut(s)	784
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	3 cut(s)	322, 591, 788
XbaI	TCTAGA	1 cut(s)	842
XceI	RCATGY	2 cut(s)	349, 526
XspI	CTAG	3 cut(s)	21, 747, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.