Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010291

Physical Location & Seq

Genomic Coordinates Reverse (-)

23808418 .. 23810955

Gene Structure 2538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023441

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGAAAGAGAAAGAGAGCTAGGGTTTCTGAGCAAAAGCAAGCACCAGAAGCCGGAGAAGACGAACAGCCAATGGACGAAGATCACAACGCCTCTTCAAGTAACAACAAGACTCTCTACGAGGTTCTTGGTGTGGAGAGAAGCGCCTCTCAGCAGGAAATCAAGAAGGCGTATTATAAGTTAGCATTGCGACTCCATCCGGATAAAAATCCTGGTGATGAGGAAGCTAAAGAGAAATTTCAGCAATTACAAAAAGTGATCTCGATTCTCGGGGATGAGGAGAAACGAGCACTGTATGACCAGACTGGTTGCGTTGACGATGATGACCTTGCTGGTGATGTTGCTCAGAATTTGCATGAATATTTCCGAGCCATGTATAAGAAGGTCACCGAAGCTGACATTGAAGAGTTTGAAGCAAACTATAGGGGATCTGATTCTGAGAAGAAAGATTTGATTGAGCTCTATAGCAAGTGCAAGGGCAATATGAACAGACTCTTCTGTTCAATGCTTTGTTCAGATCCGAAGCTTGATTCACACCGCTTTAAGGACATTCTTGATGAGGCAATAGCTTCAGGAGAACTGAAATCAACCAAAGCCTACACAAAATGGGCAAAGAAAGTATCTGAAACAAAACCTCCTACTAGTCCTTTAAAGAGGAAGAGCAAGTCAAGTAAACAGTCAGAACCAGATCTGTATGCCATCATATCTCAGCGTAGGAATGAAAGGAAAGACCAGTTTGAGTCTATGTTCTCTAACCTAGTCTCTAAGTATGGCGGGAGTAATGATGCTTCAGAACCCACAGAAGAAGAATTTGAGGCTACACAGAAAAAGCTTGAAAGCAAAAGGTCCTCCAGAAAATCGAAGCGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

291

Amino Acids

33.21

Weight (kDa)

7.58

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	39 - 100	1.5e-26	DnaJ domain
HTH_DNAJC9	PF23302	141 - 209	3.6e-27	DNAJC9 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12170 AT3G12170 AT5G06910
fragaria_vesca	FvH4_5g27800
malus_domestica	MD12G1065200.v1.1 MD14G1065200.v1.1
prunus_persica	Prupe.7G068800_v2.0.a1 Prupe.7G068800_v2.0.a1
pyrus_communis	pycom12g05700 pycom14g05310
rosa_chinensis	RchiOBHm_Chr3g0480921
rosa_laevigata	RLG00000023441
rosa_multiflora	Rmu_co8261701.1_g000001 Rmu_sc0006028.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400880
rosa_rugosa	Rorug03G0187700
rosa_samantha	Rh3AG239100 Rh3BG273300 Rh3CG268900 Rh3DG264900
rosa_wichuraiana	Rw3G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	538, 774
AclWI	GGATC	2 cut(s)	436, 512
AcsI	RAATTY	3 cut(s)	236, 349, 809
AcuI	CTGAAG	2 cut(s)	555, 774
AfiI	CCNNNNNNNGG	2 cut(s)	53, 544
AgsI	TTSAA	5 cut(s)	99, 404, 413, 504, 836
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	7 cut(s)	20, 227, 395, 460, 526, 569, 832
AluI	AGCT	7 cut(s)	20, 227, 395, 460, 526, 569, 832
Alw21I	GWGCWC	2 cut(s)	292, 462
Alw26I	GTCTC	1 cut(s)	766
AlwI	GGATC	2 cut(s)	436, 512
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	199
ApoI	RAATTY	3 cut(s)	236, 349, 809
AspLEI	GCGC	2 cut(s)	146, 867
AspS9I	GGNCC	1 cut(s)	846
AsuHPI	GGTGA	3 cut(s)	227, 347, 379
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	846
BanII	GRGCYC	1 cut(s)	462
BarI	GAAGNNNNNNTAC	2 cut(s)	772, 804
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	292, 462
BccI	CCATC	2 cut(s)	204, 707
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	766
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	3 cut(s)	21, 642, 758
BfmI	CTRYAG	2 cut(s)	421, 463
BfoI	RGCGCY	1 cut(s)	147
BglII	AGATCT	1 cut(s)	688
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	846
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	846
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	775
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	835
BsaBI	GATNNNNATC	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 544
Bse1I	ACTGG	2 cut(s)	310, 733
Bse3DI	GCAATG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	196, 280
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	53, 544
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	5 cut(s)	21, 164, 359, 429, 722
BseNI	ACTGG	2 cut(s)	310, 733
BseRI	GAGGAG	1 cut(s)	293
BsiHKAI	GWGCWC	2 cut(s)	292, 462
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	54, 200
BslI	CCNNNNNNNGG	2 cut(s)	53, 544
BsmAI	GTCTC	1 cut(s)	766
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	292, 462
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	5 cut(s)	82, 258, 428, 517, 688
BspACI	CCGC	2 cut(s)	538, 774
BspCNI	CTCAG	5 cut(s)	22, 163, 358, 430, 721
BspEI	TCCGGA	1 cut(s)	199
BspPI	GGATC	2 cut(s)	436, 512
BspQI	GCTCTTC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	310, 733
BssMI	GATC	5 cut(s)	82, 258, 428, 517, 688
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	294, 678
Bst6I	CTCTTC	4 cut(s)	100, 399, 500, 653
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	6 cut(s)	30, 150, 345, 438, 708, 765
BstEII	GGTNACC	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	196, 280
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	146, 867
BstKTI	GATC	5 cut(s)	85, 261, 431, 520, 691
BstMAI	GTCTC	1 cut(s)	766
BstMBI	GATC	5 cut(s)	82, 258, 428, 517, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	213
BstPI	GGTNACC	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	2 cut(s)	421, 463
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	428, 517, 688
BstYI	RGATCY	3 cut(s)	428, 517, 688
BtsCI	GGATG	2 cut(s)	196, 280
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	2 cut(s)	146, 867
Cfr13I	GGNCC	1 cut(s)	846
CviAII	CATG	2 cut(s)	356, 373
DdeI	CTNAG	6 cut(s)	30, 150, 345, 438, 708, 765
DpnI	GATC	5 cut(s)	84, 260, 430, 519, 690
DpnII	GATC	5 cut(s)	82, 258, 428, 517, 688
DraI	TTTAAA	1 cut(s)	651
Eam1104I	CTCTTC	4 cut(s)	100, 399, 500, 653
EarI	CTCTTC	4 cut(s)	100, 399, 500, 653
Ecl136II	GAGCTC	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	846
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	555, 774
Eco88I	CYCGRG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	460
EcoO109I	RGGNCCY	1 cut(s)	846
EcoO65I	GGTNACC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	2 cut(s)	359, 376
FatI	CATG	2 cut(s)	355, 372
FauI	CCCGC	1 cut(s)	767
FokI	GGATG	2 cut(s)	183, 287
FriOI	GRGCYC	1 cut(s)	462
FspBI	CTAG	3 cut(s)	21, 642, 758
GlaI	GCGC	2 cut(s)	145, 866
GsuI	CTGGAG	1 cut(s)	835
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	2 cut(s)	54, 200
HhaI	GCGC	2 cut(s)	146, 867
Hin1II	CATG	2 cut(s)	359, 376
Hin6I	GCGC	2 cut(s)	144, 865
HinP1I	GCGC	2 cut(s)	144, 865
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	524, 830
HinfI	GANTC	7 cut(s)	112, 192, 265, 434, 492, 530, 740
HpaII	CCGG	2 cut(s)	54, 200
HphI	GGTGA	3 cut(s)	227, 347, 379
Hpy166II	GTNNAC	2 cut(s)	316, 674
Hpy188III	TCNNGA	6 cut(s)	163, 200, 262, 554, 573, 852
Hpy8I	GTNNAC	2 cut(s)	316, 674
HpyAV	CCTTC	2 cut(s)	160, 376
HpyCH4III	ACNGT	2 cut(s)	294, 678
HpyCH4V	TGCA	2 cut(s)	355, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	6 cut(s)	30, 150, 345, 438, 708, 765
Hsp92II	CATG	2 cut(s)	359, 376
HspAI	GCGC	2 cut(s)	144, 865
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	82, 258, 428, 517, 688
LguI	GCTCTTC	1 cut(s)	653
LweI	GCATC	1 cut(s)	775
MaeI	CTAG	3 cut(s)	21, 642, 758
MaeIII	GTNAC	2 cut(s)	101, 385
MalI	GATC	5 cut(s)	84, 260, 430, 519, 690
MboI	GATC	5 cut(s)	82, 258, 428, 517, 688
MboII	GAAGA	9 cut(s)	71, 87, 92, 416, 454, 487, 670, 815, 818
MflI	RGATCY	3 cut(s)	428, 517, 688
MhlI	GDGCHC	2 cut(s)	292, 462
MluCI	AATT	4 cut(s)	236, 245, 349, 809
MlyI	GAGTC	4 cut(s)	106, 186, 486, 749
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	2 cut(s)	543, 650
MspI	CCGG	2 cut(s)	54, 200
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	5 cut(s)	82, 258, 428, 517, 688
NlaIII	CATG	2 cut(s)	359, 376
NmuCI	GTSAC	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	265, 434, 530
PleI	GAGTC	4 cut(s)	106, 186, 486, 748
PpsI	GAGTC	4 cut(s)	106, 186, 486, 748
PpuMI	RGGWCCY	1 cut(s)	846
PsiI	TTATAA	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	846
PspPPI	RGGWCCY	1 cut(s)	846
PsuI	RGATCY	3 cut(s)	428, 517, 688
SacI	GAGCTC	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	543, 650
Sau3AI	GATC	5 cut(s)	82, 258, 428, 517, 688
Sau96I	GGNCC	1 cut(s)	846
SchI	GAGTC	4 cut(s)	106, 186, 486, 749
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	292, 462
SfaNI	GCATC	1 cut(s)	775
SfcI	CTRYAG	2 cut(s)	421, 463
SinI	GGWCC	1 cut(s)	846
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	4 cut(s)	236, 245, 349, 809
SsiI	CCGC	2 cut(s)	538, 774
SspI	AATATT	1 cut(s)	362
SspMI	CTAG	3 cut(s)	21, 642, 758
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	294, 678
TaqI	TCGA	2 cut(s)	263, 860
TasI	AATT	4 cut(s)	236, 245, 349, 809
TfiI	GAWTC	3 cut(s)	265, 434, 530
Tru1I	TTAA	2 cut(s)	543, 650
Tru9I	TTAA	2 cut(s)	543, 650
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	372, 500, 735
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	846
XapI	RAATTY	3 cut(s)	236, 349, 809
XspI	CTAG	3 cut(s)	21, 642, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.