Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010291

Physical Location & Seq

Genomic Coordinates Reverse (-)

18998385 .. 19002947

Gene Structure 4563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGGAAAGAGAAAGAGAGCTAGGGTTTCCGAGCAGAAGCAAGCCGAAAAAGACGAACAGCCAATGGACCAGTCTTCAAGTAATGAGAAGACTCTCTACCAGGTTCTTGGTGTGGAGAGAAGCGCGTCTCAGCAGGAAATTAAGAAGGCCTATTACAAGTTGGCGTTGCGACTCCATCCTGATAAGAATCCTGGTGATGAGGAAGCTAAAGAGAAATTTCAGCAATTACAAAAAGTGATCTCGATTCTCGGGGATGAGGAGAAACGAGCCCTGTATGACCAGACTGGTTGCATCGACGATGATGATCTTGCTGGTGATGTTGCTCAGAATTTGCATGAATATTTCCGAGCCATGTATAAGAAGGTCACTGAAGCTGACATTGAAGAGTTTGAAGCAAACTATAGGGGATCTGATTCTGAGAAGAAAGATTTGATTGAGCTCTACAGCAAGTACAAGGGAAATATGAACAGACTCTTCTGTTCAATGCTTTGTTCAGATCCGAAGCTTGATTCACACCGCTTCAAGGACATTCTTGATGAGGCAATTACTTCAGGAGAACTGAAATCAACCAAAGCGTACACAAAATGGGCAAAGAAAGTATCTGAAACAAAACCTCCTACTAGTCCTTTAAAGCGGACGAGCAAGTCAAGTAAACAGCCGGAAGCCGATCTGTATGCCATCATATCTCAGCGCAGGAATGACAGGAAAGACCAGTTTGAGACTATGTTCTCTAACCTAGTCTCTAAATATGGCGGGAGTAATGATGCTTCAGAACCCACAGAAGAAGAATTTGAGGCTACACAGAAAAAGCTTGAAAGCAAAAGGTCCTCCAGAAAATCAAAGCGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

284

Amino Acids

32.6

Weight (kDa)

8.46

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	32 - 93	2.2e-26	DnaJ domain
HTH_DNAJC9	PF23302	134 - 202	1.3e-26	DNAJC9 HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12170 AT3G12170 AT5G06910
fragaria_vesca	FvH4_5g27800
malus_domestica	MD12G1065200.v1.1 MD14G1065200.v1.1
prunus_persica	Prupe.7G068800_v2.0.a1 Prupe.7G068800_v2.0.a1
pyrus_communis	pycom12g05700 pycom14g05310
rosa_chinensis	RchiOBHm_Chr3g0480921
rosa_laevigata	RLG00000023441
rosa_multiflora	Rmu_co8261701.1_g000001 Rmu_sc0006028.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400880
rosa_rugosa	Rorug03G0187700
rosa_samantha	Rh3AG239100 Rh3BG273300 Rh3CG268900 Rh3DG264900
rosa_wichuraiana	Rw3G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	643
AccII	CGCG	1 cut(s)	125
AciI	CCGC	3 cut(s)	517, 634, 753
AclWI	GGATC	2 cut(s)	415, 491
AcsI	RAATTY	3 cut(s)	215, 328, 788
AcuI	CTGAAG	3 cut(s)	390, 534, 753
AfaI	GTAC	2 cut(s)	452, 578
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	6 cut(s)	78, 383, 392, 483, 523, 815
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	2 cut(s)	99, 190
AluBI	AGCT	6 cut(s)	20, 206, 374, 439, 505, 811
AluI	AGCT	6 cut(s)	20, 206, 374, 439, 505, 811
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	3 cut(s)	132, 713, 745
AlwI	GGATC	2 cut(s)	415, 491
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	3 cut(s)	215, 328, 788
AspLEI	GCGC	3 cut(s)	125, 693, 846
AspS9I	GGNCC	2 cut(s)	67, 825
AsuHPI	GGTGA	2 cut(s)	206, 326
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	67, 825
BanII	GRGCYC	2 cut(s)	271, 441
BarI	GAAGNNNNNNTAC	6 cut(s)	80, 112, 137, 169, 751, 783
BbsI	GAAGAC	2 cut(s)	66, 95
Bbv12I	GWGCWC	1 cut(s)	441
BccI	CCATC	2 cut(s)	183, 686
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	2 cut(s)	101, 192
BcoDI	GTCTC	3 cut(s)	132, 713, 745
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	3 cut(s)	21, 621, 737
BfmI	CTRYAG	2 cut(s)	400, 442
Bme1390I	CCNGG	2 cut(s)	101, 192
Bme18I	GGWCC	2 cut(s)	67, 825
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	67, 825
BmrFI	CCNGG	2 cut(s)	101, 192
BmsI	GCATC	2 cut(s)	300, 754
BpiI	GAAGAC	2 cut(s)	66, 95
BpmI	CTGGAG	1 cut(s)	814
BsaBI	GATNNNNATC	2 cut(s)	186, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	3 cut(s)	70, 289, 712
Bse8I	GATNNNNATC	2 cut(s)	186, 303
BseBI	CCWGG	2 cut(s)	101, 192
BseGI	GGATG	2 cut(s)	175, 259
BseJI	GATNNNNATC	2 cut(s)	186, 303
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	4 cut(s)	143, 338, 408, 701
BseNI	ACTGG	3 cut(s)	70, 289, 712
BseRI	GAGGAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	659
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	3 cut(s)	132, 713, 745
BsmBI	CGTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	271, 441
Bsp143I	GATC	5 cut(s)	237, 304, 407, 496, 667
BspACI	CCGC	3 cut(s)	517, 634, 753
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	4 cut(s)	142, 337, 409, 700
BspFNI	CGCG	1 cut(s)	125
BspPI	GGATC	2 cut(s)	415, 491
BsrI	ACTGG	3 cut(s)	70, 289, 712
BssMI	GATC	5 cut(s)	237, 304, 407, 496, 667
Bst2UI	CCWGG	2 cut(s)	101, 192
Bst6I	CTCTTC	2 cut(s)	378, 479
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	129, 324, 417, 687
BstF5I	GGATG	2 cut(s)	175, 259
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	3 cut(s)	125, 693, 846
BstKTI	GATC	5 cut(s)	240, 307, 410, 499, 670
BstMAI	GTCTC	3 cut(s)	132, 713, 745
BstMBI	GATC	5 cut(s)	237, 304, 407, 496, 667
BstNI	CCWGG	2 cut(s)	101, 192
BstSCI	CCNGG	2 cut(s)	99, 190
BstSFI	CTRYAG	2 cut(s)	400, 442
BstUI	CGCG	1 cut(s)	125
BstV2I	GAAGAC	2 cut(s)	66, 95
BstX2I	RGATCY	2 cut(s)	407, 496
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	2 cut(s)	407, 496
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	175, 259
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	3 cut(s)	125, 693, 846
Cfr13I	GGNCC	2 cut(s)	67, 825
CseI	GACGC	1 cut(s)	114
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	451, 577
CviAII	CATG	2 cut(s)	335, 352
CviQI	GTAC	2 cut(s)	451, 577
DdeI	CTNAG	4 cut(s)	129, 324, 417, 687
DpnI	GATC	5 cut(s)	239, 306, 409, 498, 669
DpnII	GATC	5 cut(s)	237, 304, 407, 496, 667
DraI	TTTAAA	1 cut(s)	630
DrdI	GACNNNNNNGTC	1 cut(s)	643
DseDI	GACNNNNNNGTC	1 cut(s)	643
Eam1104I	CTCTTC	2 cut(s)	378, 479
EarI	CTCTTC	2 cut(s)	378, 479
Ecl136II	GAGCTC	1 cut(s)	439
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	2 cut(s)	271, 441
Eco47I	GGWCC	2 cut(s)	67, 825
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	3 cut(s)	390, 534, 753
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	825
EcoRII	CCWGG	2 cut(s)	99, 190
EcoT38I	GRGCYC	2 cut(s)	271, 441
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	338, 355
FatI	CATG	2 cut(s)	334, 351
FauI	CCCGC	1 cut(s)	746
FokI	GGATG	2 cut(s)	162, 266
FriOI	GRGCYC	2 cut(s)	271, 441
FspBI	CTAG	3 cut(s)	21, 621, 737
GlaI	GCGC	3 cut(s)	124, 692, 845
GsuI	CTGGAG	1 cut(s)	814
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	3 cut(s)	125, 693, 846
Hin1II	CATG	2 cut(s)	338, 355
Hin6I	GCGC	3 cut(s)	123, 691, 844
HinP1I	GCGC	3 cut(s)	123, 691, 844
HindIII	AAGCTT	2 cut(s)	503, 809
HinfI	GANTC	7 cut(s)	91, 171, 187, 244, 413, 471, 509
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	2 cut(s)	206, 326
Hpy166II	GTNNAC	2 cut(s)	579, 653
Hpy188I	TCNGA	9 cut(s)	31, 327, 347, 412, 418, 496, 501, 604, 772
Hpy188III	TCNNGA	5 cut(s)	179, 241, 533, 552, 831
Hpy8I	GTNNAC	2 cut(s)	579, 653
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	139, 355
HpyCH4V	TGCA	2 cut(s)	291, 334
HpyF3I	CTNAG	4 cut(s)	129, 324, 417, 687
Hsp92II	CATG	2 cut(s)	338, 355
HspAI	GCGC	3 cut(s)	123, 691, 844
Kzo9I	GATC	5 cut(s)	237, 304, 407, 496, 667
LweI	GCATC	2 cut(s)	300, 754
MabI	ACCWGGT	1 cut(s)	99
MaeI	CTAG	3 cut(s)	21, 621, 737
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	5 cut(s)	239, 306, 409, 498, 669
MboI	GATC	5 cut(s)	237, 304, 407, 496, 667
MboII	GAAGA	7 cut(s)	66, 100, 395, 433, 466, 794, 797
MflI	RGATCY	2 cut(s)	407, 496
MhlI	GDGCHC	2 cut(s)	271, 441
MluCI	AATT	6 cut(s)	138, 215, 224, 328, 543, 788
MlyI	GAGTC	3 cut(s)	85, 165, 465
MnlI	CCTC	6 cut(s)	193, 250, 532, 624, 787, 838
MseI	TTAA	2 cut(s)	141, 629
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	101, 192
MvaI	CCWGG	2 cut(s)	101, 192
MvnI	CGCG	1 cut(s)	125
NdeII	GATC	5 cut(s)	237, 304, 407, 496, 667
NlaIII	CATG	2 cut(s)	338, 355
NmuCI	GTSAC	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	149
PfeI	GAWTC	4 cut(s)	187, 244, 413, 509
PleI	GAGTC	3 cut(s)	85, 165, 465
PpsI	GAGTC	3 cut(s)	85, 165, 465
PpuMI	RGGWCCY	1 cut(s)	825
Psp124BI	GAGCTC	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	825
Psp6I	CCWGG	2 cut(s)	99, 190
PspGI	CCWGG	2 cut(s)	99, 190
PspPI	GGNCC	2 cut(s)	67, 825
PspPPI	RGGWCCY	1 cut(s)	825
PsuI	RGATCY	2 cut(s)	407, 496
RsaI	GTAC	2 cut(s)	452, 578
RsaNI	GTAC	2 cut(s)	451, 577
SacI	GAGCTC	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	141, 629
Sau3AI	GATC	5 cut(s)	237, 304, 407, 496, 667
Sau96I	GGNCC	2 cut(s)	67, 825
SchI	GAGTC	3 cut(s)	85, 165, 465
ScrFI	CCNGG	2 cut(s)	101, 192
SduI	GDGCHC	2 cut(s)	271, 441
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	300, 754
SfcI	CTRYAG	2 cut(s)	400, 442
SinI	GGWCC	2 cut(s)	67, 825
SpeI	ACTAGT	1 cut(s)	620
Sse9I	AATT	6 cut(s)	138, 215, 224, 328, 543, 788
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	3 cut(s)	517, 634, 753
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	3 cut(s)	21, 621, 737
SstI	GAGCTC	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	99, 190
TaqI	TCGA	2 cut(s)	242, 294
TasI	AATT	6 cut(s)	138, 215, 224, 328, 543, 788
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	4 cut(s)	187, 244, 413, 509
Tru1I	TTAA	2 cut(s)	141, 629
Tru9I	TTAA	2 cut(s)	141, 629
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	351, 479
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	67, 825
XapI	RAATTY	3 cut(s)	215, 328, 788
XspI	CTAG	3 cut(s)	21, 621, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.