AT3G12340

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
3925498 .. 3929473
3976 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12340.1

Sequence Viewer

Length: 1500 bp
ATGGCTTTTTGGGGAGTTGAAGTGAAGCCAGGCAAAACTTTCACTCTTAAGAATAATGAAGCTACAGGAATCAGAAGACTTCACCTTTCCCAGGCAACATTGGGCCATGGTACTGCAACCAATAGAAGCATTCTACAGTGTAACGTTGGGAACAAAAGTCCCCTCTTGTTATGTGTCTTGACTCCTGATAAAGTTGATTCTTGCCAATTGAATCTGGAGTTTGAAGAAACTGATGAGGTTATCTTCTCTGTCATCGGACCTCGGAGTGTACACCTCACTGGCTACTTCCTCGGAAGGAGTACCGGGTTTAGGCCAAATGATGATGAATCAGAGTCATTTGGAGAAGACATTGTTGACACAGACATGGAGAAAGGTAGCAGTGATGATTATGACTACAGTGATAGTTTCATTAACGACGACGATCCAGCTGTCCGTGGTTCACACGTGTCTAGTACTGATGATGATGAAATATCTATTAAGGAGATGACAGCTAAAACAAAAGAGAAGAAAAAAAATGGAAAAGGTAGAAGACTAAGGAAGAAGTTTCAAGTTTCTGATTCAGATTCTGATGAAACTTCGGCTAGAGCTGATGAATCTAGCAATGAGGATTCTGTAGAAGTACTTAACAATGGTAATGAGCCCAAGATCGCGAAGGTCCATTCTTCAGAGAGTCCTCTGCCTTCAAGGGTTACGAGGTCGAAGGCAAGAAAATCGACTTTGGAAAGTGGTGAGCCTGCCAAGTGTGAGAAGACATTTGAAGCAAAAATTAATACTCACAAGACTCTGGATAATAGGGAGGATAAACCATTGGATGATGCTAAACTGTCTCCCGTCCAGAAAGACTGTGAAATTCTTTCGAAGAAAAAAAGAAACAAGGAAAGGTCTAAGAGTTCAGCTATAATTATTGACTCAGATGACGGAGAGGGGAAAAATATGCCTGAAAGTCTTCAGAATGAGAATCCAGTTTCTGACAAGGGGATCAAATCATCAAGTGATGTATTACTTTCTCAGAATGGTGATGCAACTCTATCAAAGAAAAAGAAGAAAAGGGATAGGAGAGAGGAAACTACAGATGTCCCGGAATGTCCAGAGAAGAAGAAACAAGCTATCGACAAGAACATCGAGAAAGAAGCTGGTACTAAGAAACCACTAGAAACGAGGACTTTATCAAATGGAGTGATCATTGAAGATATTGAAAAAGGAAAGTTAGATGGAAAATCAGCTGTTAAAGGGAAAAAGGTCAGTATACTCTATACTGGGAAGTTGAAAGACACCGGGAACTTGTTTGATTCAAACTTGGGAGAAGATCCACTAAGATTCCGCTTAGGTGGAGAAAATGTCATAGAAGGTCTCAGCATTGGTGTTGAAGGAATGCGAGTTGGTGATAAGAGAAGACTCATAATACCGCCAGCCCTCGGGTACTCAAAAAGGGGATTGAAGGAAAAGGTGCCTAAGAGTGCGTGGCTTGTCTATGAAGTGGAGGCTGTAAAAATCAGATAA

Protein Analysis

499

Amino Acids

55.18

Weight (kDa)

7.03

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 96 1.6e-23 Nucleoplasmin-like domain
FKBP_C PF00254 407 - 494 2.1e-25 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1447
AccI GTMKAC 1 cut(s) 1246
AccII CGCG 1 cut(s) 650
AciI CCGC 2 cut(s) 1321, 1406
AclI AACGTT 1 cut(s) 144
AclWI GGATC 3 cut(s) 416, 986, 1301
AcsI RAATTY 1 cut(s) 849
AcuI CTGAAG 2 cut(s) 648, 932
AcvI CACGTG 1 cut(s) 445
AfaI GTAC 7 cut(s) 112, 270, 301, 454, 621, 1138, 1421
AfiI CCNNNNNNNGG 3 cut(s) 91, 309, 1415
AflII CTTAAG 1 cut(s) 47
AflIII ACRYGT 2 cut(s) 442, 444
AjnI CCWGG 2 cut(s) 28, 90
AluBI AGCT 8 cut(s) 62, 428, 491, 587, 896, 1106, 1133, 1223
AluI AGCT 8 cut(s) 62, 428, 491, 587, 896, 1106, 1133, 1223
Alw26I GTCTC 2 cut(s) 831, 1355
AlwI GGATC 3 cut(s) 416, 986, 1301
AlwNI CAGNNNCTG 2 cut(s) 566, 968
Ama87I CYCGRG 1 cut(s) 1415
AoxI GGCC 2 cut(s) 103, 311
ApoI RAATTY 1 cut(s) 849
AseI ATTAAT 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 945
AspS9I GGNCC 3 cut(s) 103, 257, 655
AsuC2I CCSGG 3 cut(s) 304, 1079, 1276
AsuHPI GGTGA 4 cut(s) 74, 740, 1028, 1394
AsuII TTCGAA 1 cut(s) 857
AvaI CYCGRG 1 cut(s) 1415
AvaII GGWCC 2 cut(s) 257, 655
BanI GGYRCC 1 cut(s) 1447
BanII GRGCYC 1 cut(s) 642
BbrPI CACGTG 1 cut(s) 445
BbsI GAAGAC 6 cut(s) 82, 351, 535, 755, 938, 1399
BccI CCATC 1 cut(s) 1205
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 2 cut(s) 30, 92
BclI TGATCA 1 cut(s) 1179
BcnI CCSGG 3 cut(s) 304, 1079, 1276
BcoDI GTCTC 2 cut(s) 831, 1355
BfaI CTAG 4 cut(s) 450, 582, 597, 1151
BfmI CTRYAG 5 cut(s) 63, 134, 394, 612, 1068
BfrI CTTAAG 1 cut(s) 47
BmcAI AGTACT 2 cut(s) 454, 621
Bme1390I CCNGG 5 cut(s) 30, 92, 304, 1079, 1276
Bme18I GGWCC 2 cut(s) 257, 655
BmeT110I CYCGRG 1 cut(s) 1415
BmgT120I GGNCC 3 cut(s) 103, 257, 655
BmiI GGNNCC 1 cut(s) 1449
BmrFI CCNGG 5 cut(s) 30, 92, 304, 1079, 1276
BmrI ACTGGG 1 cut(s) 1266
BmsI GCATC 2 cut(s) 805, 1009
BmuI ACTGGG 1 cut(s) 1266
BpiI GAAGAC 6 cut(s) 82, 351, 535, 755, 938, 1399
BpmI CTGGAG 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 1324
Bpu14I TTCGAA 1 cut(s) 857
BpuMI CCSGG 3 cut(s) 304, 1079, 1276
BsaAI YACGTR 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 1355
BsaJI CCNNGG 6 cut(s) 90, 106, 260, 289, 433, 1414
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 1323, 1353
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 309, 1415
Bse1I ACTGG 3 cut(s) 283, 962, 1261
Bse3DI GCAATG 1 cut(s) 607
BseBI CCWGG 2 cut(s) 30, 92
BseDI CCNNGG 6 cut(s) 90, 106, 260, 289, 433, 1414
BseGI GGATG 1 cut(s) 817
BseLI CCNNNNNNNGG 3 cut(s) 91, 309, 1415
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 3 cut(s) 924, 1022, 1366
BseNI ACTGG 3 cut(s) 283, 962, 1261
Bsh1236I CGCG 1 cut(s) 650
BshFI GGCC 2 cut(s) 105, 313
BshNI GGYRCC 1 cut(s) 1447
BsiHKCI CYCGRG 1 cut(s) 1415
BsiSI CCGG 3 cut(s) 303, 1079, 1275
BslFI GGGAC 2 cut(s) 144, 1061
BslI CCNNNNNNNGG 3 cut(s) 91, 309, 1415
BsmAI GTCTC 2 cut(s) 831, 1355
BsmFI GGGAC 2 cut(s) 144, 1061
BsmI GAATGC 2 cut(s) 129, 1377
BsnI GGCC 2 cut(s) 105, 313
Bso31I GGTCTC 1 cut(s) 1355
BsoBI CYCGRG 1 cut(s) 1415
Bsp119I TTCGAA 1 cut(s) 857
Bsp1286I GDGCHC 1 cut(s) 642
Bsp1407I TGTACA 1 cut(s) 268
Bsp143I GATC 5 cut(s) 421, 645, 978, 1179, 1306
Bsp19I CCATGG 1 cut(s) 106
Bsp68I TCGCGA 1 cut(s) 650
BspACI CCGC 2 cut(s) 1321, 1406
BspANI GGCC 2 cut(s) 105, 313
BspCNI CTCAG 3 cut(s) 923, 1021, 1365
BspFNI CGCG 1 cut(s) 650
BspLI GGNNCC 1 cut(s) 1449
BspPI GGATC 3 cut(s) 416, 986, 1301
BspT104I TTCGAA 1 cut(s) 857
BspT107I GGYRCC 1 cut(s) 1447
BspTI CTTAAG 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 1355
BsrDI GCAATG 1 cut(s) 607
BsrGI TGTACA 1 cut(s) 268
BsrI ACTGG 3 cut(s) 283, 962, 1261
BssECI CCNNGG 6 cut(s) 90, 106, 260, 289, 433, 1414
BssMI GATC 5 cut(s) 421, 645, 978, 1179, 1306
BssNAI GTATAC 1 cut(s) 1247
BssT1I CCWWGG 1 cut(s) 106
Bst1107I GTATAC 1 cut(s) 1247
Bst2UI CCWGG 2 cut(s) 30, 92
Bst4CI ACNGT 4 cut(s) 138, 398, 825, 845
BstAFI CTTAAG 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 268
BstBAI YACGTR 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 857
BstC8I GCNNGC 2 cut(s) 735, 1410
BstDEI CTNAG 9 cut(s) 533, 885, 910, 1008, 1140, 1313, 1324, 1352, 1452
BstDSI CCRYGG 2 cut(s) 106, 433
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 817
BstFNI CGCG 1 cut(s) 650
BstKTI GATC 5 cut(s) 424, 648, 981, 1182, 1309
BstMAI GTCTC 2 cut(s) 831, 1355
BstMBI GATC 5 cut(s) 421, 645, 978, 1179, 1306
BstNI CCWGG 2 cut(s) 30, 92
BstSCI CCNGG 5 cut(s) 28, 90, 302, 1077, 1274
BstSFI CTRYAG 5 cut(s) 63, 134, 394, 612, 1068
BstUI CGCG 1 cut(s) 650
BstV2I GAAGAC 6 cut(s) 82, 351, 535, 755, 938, 1399
BstX2I RGATCY 1 cut(s) 1306
BstYI RGATCY 1 cut(s) 1306
BstZ17I GTATAC 1 cut(s) 1247
BsuRI GGCC 2 cut(s) 105, 313
BtgI CCRYGG 2 cut(s) 106, 433
BtsCI GGATG 1 cut(s) 817
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 4 cut(s) 143, 276, 385, 403
BtuMI TCGCGA 1 cut(s) 650
Cac8I GCNNGC 2 cut(s) 735, 1410
CaiI CAGNNNCTG 2 cut(s) 566, 968
Cfr13I GGNCC 3 cut(s) 103, 257, 655
Csp6I GTAC 7 cut(s) 111, 269, 300, 453, 620, 1137, 1420
CviAII CATG 2 cut(s) 107, 364
CviQI GTAC 7 cut(s) 111, 269, 300, 453, 620, 1137, 1420
DdeI CTNAG 9 cut(s) 533, 885, 910, 1008, 1140, 1313, 1324, 1352, 1452
DpnI GATC 5 cut(s) 423, 647, 980, 1181, 1308
DpnII GATC 5 cut(s) 421, 645, 978, 1179, 1306
Eco130I CCWWGG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 1355
Eco47I GGWCC 2 cut(s) 257, 655
Eco57I CTGAAG 2 cut(s) 648, 932
Eco72I CACGTG 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 1415
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 28, 90
EcoT14I CCWWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 642
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 110, 367
FaqI GGGAC 2 cut(s) 144, 1061
FatI CATG 2 cut(s) 106, 363
FbaI TGATCA 1 cut(s) 1179
FblI GTMKAC 1 cut(s) 1246
FokI GGATG 1 cut(s) 824
FriOI GRGCYC 1 cut(s) 642
FspBI CTAG 4 cut(s) 450, 582, 597, 1151
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 2 cut(s) 105, 313
HapII CCGG 3 cut(s) 303, 1079, 1275
Hin1II CATG 2 cut(s) 110, 367
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HpaII CCGG 3 cut(s) 303, 1079, 1275
HphI GGTGA 4 cut(s) 74, 740, 1028, 1394
Hpy166II GTNNAC 5 cut(s) 269, 271, 355, 440, 1247
Hpy188III TCNNGA 8 cut(s) 178, 185, 215, 649, 785, 835, 1088, 1123
Hpy8I GTNNAC 5 cut(s) 269, 271, 355, 440, 1247
Hpy99I CGWCG 2 cut(s) 419, 422
HpyAV CCTTC 7 cut(s) 288, 646, 690, 694, 1340, 1361, 1432
HpyCH4III ACNGT 4 cut(s) 138, 398, 825, 845
HpyCH4IV ACGT 2 cut(s) 144, 444
HpyCH4V TGCA 2 cut(s) 116, 1022
HpyF3I CTNAG 9 cut(s) 533, 885, 910, 1008, 1140, 1313, 1324, 1352, 1452
HpySE526I ACGT 2 cut(s) 144, 444
Hsp92II CATG 2 cut(s) 110, 367
Ksp22I TGATCA 1 cut(s) 1179
Kzo9I GATC 5 cut(s) 421, 645, 978, 1179, 1306
LweI GCATC 2 cut(s) 805, 1009
MaeI CTAG 4 cut(s) 450, 582, 597, 1151
MaeII ACGT 2 cut(s) 144, 444
MaeIII GTNAC 2 cut(s) 140, 688
MalI GATC 5 cut(s) 423, 647, 980, 1181, 1308
MboI GATC 5 cut(s) 421, 645, 978, 1179, 1306
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 1 cut(s) 1306
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 4 cut(s) 206, 765, 849, 900
MlyI GAGTC 6 cut(s) 175, 341, 679, 775, 902, 1389
MroXI GAANNNNTTC 1 cut(s) 945
MseI TTAA 6 cut(s) 48, 411, 477, 624, 768, 1227
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 2 cut(s) 428, 1223
MspCI CTTAAG 1 cut(s) 47
MspI CCGG 3 cut(s) 303, 1079, 1275
MspR9I CCNGG 5 cut(s) 30, 92, 304, 1079, 1276
MunI CAATTG 1 cut(s) 206
Mva1269I GAATGC 2 cut(s) 129, 1377
MvaI CCWGG 2 cut(s) 30, 92
MvnI CGCG 1 cut(s) 650
NciI CCSGG 3 cut(s) 304, 1079, 1276
NcoI CCATGG 1 cut(s) 106
NdeII GATC 5 cut(s) 421, 645, 978, 1179, 1306
NlaIII CATG 2 cut(s) 110, 367
NlaIV GGNNCC 1 cut(s) 1449
NruI TCGCGA 1 cut(s) 650
NspV TTCGAA 1 cut(s) 857
PctI GAATGC 2 cut(s) 129, 1377
PdmI GAANNNNTTC 1 cut(s) 945
PfoI TCCNGGA 1 cut(s) 1077
PleI GAGTC 6 cut(s) 175, 340, 678, 775, 902, 1389
PmaCI CACGTG 1 cut(s) 445
PmlI CACGTG 1 cut(s) 445
PpsI GAGTC 6 cut(s) 175, 340, 678, 775, 902, 1389
Ppu21I YACGTR 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 768
Psp1406I AACGTT 1 cut(s) 144
Psp6I CCWGG 2 cut(s) 28, 90
PspCI CACGTG 1 cut(s) 445
PspGI CCWGG 2 cut(s) 28, 90
PspN4I GGNNCC 1 cut(s) 1449
PspPI GGNCC 3 cut(s) 103, 257, 655
PstNI CAGNNNCTG 2 cut(s) 566, 968
PsuI RGATCY 1 cut(s) 1306
PvuII CAGCTG 2 cut(s) 428, 1223
RruI TCGCGA 1 cut(s) 650
RsaI GTAC 7 cut(s) 112, 270, 301, 454, 621, 1138, 1421
RsaNI GTAC 7 cut(s) 111, 269, 300, 453, 620, 1137, 1420
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 6 cut(s) 48, 411, 477, 624, 768, 1227
Sau3AI GATC 5 cut(s) 421, 645, 978, 1179, 1306
Sau96I GGNCC 3 cut(s) 103, 257, 655
ScaI AGTACT 2 cut(s) 454, 621
SchI GAGTC 6 cut(s) 175, 341, 679, 775, 902, 1389
ScrFI CCNGG 5 cut(s) 30, 92, 304, 1079, 1276
SduI GDGCHC 1 cut(s) 642
SfaNI GCATC 2 cut(s) 805, 1009
SfcI CTRYAG 5 cut(s) 63, 134, 394, 612, 1068
SfuI TTCGAA 1 cut(s) 857
SinI GGWCC 2 cut(s) 257, 655
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 4 cut(s) 206, 765, 849, 900
SsiI CCGC 2 cut(s) 1321, 1406
SspMI CTAG 4 cut(s) 450, 582, 597, 1151
StyD4I CCNGG 5 cut(s) 28, 90, 302, 1077, 1274
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 4 cut(s) 138, 398, 825, 845
TaiI ACGT 2 cut(s) 147, 447
TaqI TCGA 5 cut(s) 698, 713, 857, 1110, 1122
TasI AATT 4 cut(s) 206, 765, 849, 900
TatI WGTACW 3 cut(s) 268, 452, 619
Tru1I TTAA 6 cut(s) 48, 411, 477, 624, 768, 1227
Tru9I TTAA 6 cut(s) 48, 411, 477, 624, 768, 1227
TscAI CASTG 4 cut(s) 143, 283, 385, 403
TspDTI ATGAA 7 cut(s) 72, 339, 397, 480, 585, 606, 1488
TspGWI ACGGA 2 cut(s) 422, 933
TspRI CASTG 4 cut(s) 143, 283, 385, 403
Vha464I CTTAAG 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 257, 655
VspI ATTAAT 1 cut(s) 768
XagI CCTNNNNNAGG 1 cut(s) 89
XapI RAATTY 1 cut(s) 849
XmiI GTMKAC 1 cut(s) 1246
XmnI GAANNNNTTC 1 cut(s) 945
XspI CTAG 4 cut(s) 450, 582, 597, 1151
ZrmI AGTACT 2 cut(s) 454, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.