FvH4_7g11890

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
10846921 .. 10851834
4914 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11890.t3

Sequence Viewer

Length: 1734 bp
ATGGCTTTCTGGGGGATTGAAGTCAAACCCGGAAAGCCTTTCACTCATAAACCTGGTGACTCCAATGGACGGCTTCACATTTCGATGGCAACATTGGGGTTGGGGGCCGCAACCAAAAGAAGCATACTCCAGTGTAATGTTGGAAACAAGAGTCCGGTTTATCTATGCTGTTTAAATCCTGAGAAGAATGAGTGTTTGCAACTACATTTGGAATTTGATGAGGCTGATGAAGTCATGTTCTCAGTTCTTGGTCCTCGGAGTGTTCACCTGGCTGGTTACTATCTAGGTGGTCATCGACCTTACAATCCAGATGAGTCAGAATCCTTTGGAGAAGATATTGCTGACTCAGAAACACAGAGATCTGTTAACAGTGAAGACGAAGAGTATGATGACAGTTTCATTGATGATGGTGATCCTGAAGTCTTCCCCTCTACTCCTTTATCTGATGCTACAGATTCTGATTCTGGATCTGAAGAGGAGTTTTTGGCTAAGAAGAAACCTCAGAAGGGAAAGGCGCGTCACAGACGACTTAGAAAGACTTACCTAATAAGTGATTCAGACAGGGAATGTGAAAACGAGAATGATGACAATCGCCCAAGTTCCTCTTTGTTCAAGACAAAATTATCCACCAATGAGAATGCAACACAGGAAAGGGAAGAAAAAATTGACAAAGGAACTGTTGATACCAGCAACGAGAAGGCAGTGGATGATTTTGCTACTGAATCAATTAGACATGCTGATGATGTACTTGTAGATGGTCAGATGAAAAGGCAATTGGACGTGCCAGTTGATCCGTCTTCCAAAGTAGACCTTGAAAATGGGGGAAAGCCAAAAAGGAAAAGAAAAGAACCGTTGCAGGAGGAGAAAAAACTTGAAGCTGATGTCCTTAAAAAAGAGGATGGACCCCAGAAAATTGAGGAAAAAGCTGAAAATAGGAGTCACAATGGACAACTGACTGCGGTAAACCATAGAGCTGAAATGCCAGATAACTTATCATTGCCTTCCACGGAGGTTGGCCCTGGAAACAGTGATAAACCGAAGAAGAAAAGGAAGAAGCGGGTGGAGGAGAAAACAGCTGAGGTTATCTGTACTAACCCTGGTAATGATGTACAAGAGAATGAGGCAAAGGGAAACCTCTGCTTGGATCCACCAGTCAAAAGTGAACAAAATCAGAAGTCAGCCAAGGATGAGATTTTTGGCCATGACTCCCATAAATTTGTTGATGAACCTGATGAAAACATAGTCAAAAAGAAGAAGAAGAAGAAGAAAAGCAAGACCCATTCACATGGAGAAACTGTGAACACAGATATAGCTCTCTTGTCAGTAGAAGAGAAAATCACATCTTCCGTGAAGAATGAGGCCAATAATGTCAATGCTAAATCATCTGAAGTTAGAACCTTCCCCAGTGGATTACACATCGAGGAGTTAGAAGCAGGAGAACCGGATGGCAAAGTTGCGACCTCTGGGAAAAAGATCACTGTTCATTATGTTGGCAAGTTGAAAGAGAATGGAGGAGTAGTTGAGTTGCGGGATGGCAGTGCTCCTTCAAAGTTCCGCTTAGGTCGGGGAAGAGTTATAGAGGGTTTGGATGCTGGTATCGATGGCATGCGAGTCGGTGGCAAACGAAGACTTGTTATCCCACCTTCAATGACTTATGGGAGTAAAGGAGATGGTAAAAATATACCACCAAACTCATGGTTGGTATATGATGTCGAGTTGTTGAAAGTTCACTGA

Protein Analysis

578

Amino Acids

63.88

Weight (kDa)

5.73

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 94 2.3e-23 Nucleoplasmin-like domain
FKBP_C PF00254 487 - 536 1.5e-07 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 807
AccII CGCG 1 cut(s) 517
AciI CCGC 5 cut(s) 108, 959, 1057, 1528, 1555
AclWI GGATC 5 cut(s) 407, 475, 785, 1139, 1152
AcoI YGGCCR 1 cut(s) 1198
AcsI RAATTY 2 cut(s) 212, 1214
AcuI CTGAAG 3 cut(s) 438, 492, 1407
AfaI GTAC 3 cut(s) 747, 1090, 1110
AfiI CCNNNNNNNGG 3 cut(s) 69, 506, 1141
AgsI TTSAA 8 cut(s) 20, 613, 815, 875, 1501, 1548, 1647, 1723
AjiI CACGTC 1 cut(s) 781
AjnI CCWGG 4 cut(s) 52, 267, 1018, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 758, 790
AluBI AGCT 5 cut(s) 878, 926, 974, 1076, 1313
AluI AGCT 5 cut(s) 878, 926, 974, 1076, 1313
Alw21I GWGCWC 1 cut(s) 1543
AlwI GGATC 5 cut(s) 407, 475, 785, 1139, 1152
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 4 cut(s) 105, 1015, 1198, 1359
ApoI RAATTY 2 cut(s) 212, 1214
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 4 cut(s) 105, 251, 902, 1016
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 3 cut(s) 68, 257, 422
AvaII GGWCC 2 cut(s) 251, 902
BalI TGGCCA 1 cut(s) 1200
BamHI GGATCC 1 cut(s) 1144
BbsI GAAGAC 4 cut(s) 381, 415, 789, 1633
Bbv12I GWGCWC 1 cut(s) 1543
BbvCI CCTCAGC 1 cut(s) 1077
BccI CCATC 8 cut(s) 79, 401, 749, 893, 1439, 1526, 1595, 1664
BceAI ACGGC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 1594, 1628
BciT130I CCWGG 4 cut(s) 54, 269, 1020, 1098
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 450
BglII AGATCT 1 cut(s) 359
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 5 cut(s) 30, 54, 269, 1020, 1098
Bme18I GGWCC 2 cut(s) 251, 902
BmgBI CACGTC 1 cut(s) 781
BmgT120I GGNCC 4 cut(s) 105, 251, 902, 1016
BmiI GGNNCC 3 cut(s) 106, 904, 1146
BmrFI CCNGG 5 cut(s) 30, 54, 269, 1020, 1098
BmrI ACTGGG 1 cut(s) 1398
BmsI GCATC 2 cut(s) 436, 1579
BmuI ACTGGG 1 cut(s) 1398
BpiI GAAGAC 4 cut(s) 381, 415, 789, 1633
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 2 cut(s) 1077, 1558
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 1599
BsaBI GATNNNNATC 2 cut(s) 411, 588
BsaJI CCNNGG 5 cut(s) 254, 1005, 1018, 1096, 1182
BsaWI WCCGGW 2 cut(s) 154, 1441
BsaXI ACNNNNNCTCC 4 cut(s) 1281, 1311, 1503, 1533
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 506, 1141
Bse1I ACTGG 4 cut(s) 130, 785, 1151, 1404
Bse3DI GCAATG 1 cut(s) 995
Bse8I GATNNNNATC 2 cut(s) 411, 588
BseBI CCWGG 4 cut(s) 54, 269, 1020, 1098
BseCI ATCGAT 1 cut(s) 1599
BseDI CCNNGG 5 cut(s) 254, 1005, 1018, 1096, 1182
BseGI GGATG 6 cut(s) 712, 904, 1192, 1450, 1537, 1594
BseJI GATNNNNATC 2 cut(s) 411, 588
BseLI CCNNNNNNNGG 3 cut(s) 69, 506, 1141
BseMI GCAATG 1 cut(s) 995
BseMII CTCAG 5 cut(s) 171, 255, 360, 515, 1068
BseNI ACTGG 4 cut(s) 130, 785, 1151, 1404
BseRI GAGGAG 5 cut(s) 491, 875, 1079, 1436, 1527
Bsh1236I CGCG 1 cut(s) 517
BshFI GGCC 4 cut(s) 107, 1017, 1200, 1361
BshVI ATCGAT 1 cut(s) 1599
BsiHKAI GWGCWC 1 cut(s) 1543
BsiSI CCGG 3 cut(s) 30, 155, 1442
BslI CCNNNNNNNGG 3 cut(s) 69, 506, 1141
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 4 cut(s) 107, 1017, 1200, 1361
Bsp1286I GDGCHC 1 cut(s) 1543
Bsp1407I TGTACA 1 cut(s) 1108
Bsp143I GATC 6 cut(s) 359, 412, 467, 790, 1144, 1473
BspACI CCGC 5 cut(s) 108, 959, 1057, 1528, 1555
BspANI GGCC 4 cut(s) 107, 1017, 1200, 1361
BspCNI CTCAG 5 cut(s) 172, 254, 359, 514, 1069
BspDI ATCGAT 1 cut(s) 1599
BspFNI CGCG 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 106, 904, 1146
BspPI GGATC 5 cut(s) 407, 475, 785, 1139, 1152
BsrDI GCAATG 1 cut(s) 995
BsrGI TGTACA 1 cut(s) 1108
BsrI ACTGG 4 cut(s) 130, 785, 1151, 1404
BssECI CCNNGG 5 cut(s) 254, 1005, 1018, 1096, 1182
BssMI GATC 6 cut(s) 359, 412, 467, 790, 1144, 1473
BssT1I CCWWGG 1 cut(s) 1182
Bst2UI CCWGG 4 cut(s) 54, 269, 1020, 1098
Bst4CI ACNGT 7 cut(s) 371, 395, 679, 852, 1028, 1297, 1480
Bst6I CTCTTC 4 cut(s) 375, 468, 1323, 1564
BstAUI TGTACA 1 cut(s) 1108
BstC8I GCNNGC 1 cut(s) 1607
BstDEI CTNAG 8 cut(s) 180, 241, 346, 489, 501, 530, 1077, 1558
BstDSI CCRYGG 1 cut(s) 1005
BstF5I GGATG 6 cut(s) 712, 904, 1192, 1450, 1537, 1594
BstFNI CGCG 1 cut(s) 517
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 6 cut(s) 362, 415, 470, 793, 1147, 1476
BstMBI GATC 6 cut(s) 359, 412, 467, 790, 1144, 1473
BstNI CCWGG 4 cut(s) 54, 269, 1020, 1098
BstNSI RCATGY 2 cut(s) 737, 1609
BstSCI CCNGG 5 cut(s) 28, 52, 267, 1018, 1096
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 1 cut(s) 517
BstV2I GAAGAC 4 cut(s) 381, 415, 789, 1633
BstX2I RGATCY 3 cut(s) 359, 467, 1144
BstXI CCANNNNNNTGG 2 cut(s) 1286, 1695
BstYI RGATCY 3 cut(s) 359, 467, 1144
Bsu15I ATCGAT 1 cut(s) 1599
BsuRI GGCC 4 cut(s) 107, 1017, 1200, 1361
BsuTUI ATCGAT 1 cut(s) 1599
BtgI CCRYGG 1 cut(s) 1005
BtrI CACGTC 1 cut(s) 781
BtsCI GGATG 6 cut(s) 712, 904, 1192, 1450, 1537, 1594
BtsI GCAGTG 2 cut(s) 708, 1543
BtsIMutI CAGTG 8 cut(s) 137, 376, 708, 1033, 1411, 1476, 1543, 1729
Cac8I GCNNGC 1 cut(s) 1607
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 1 cut(s) 517
Cfr13I GGNCC 4 cut(s) 105, 251, 902, 1016
ClaI ATCGAT 1 cut(s) 1599
CseI GACGC 1 cut(s) 506
CsiI ACCWGGT 1 cut(s) 52
Csp6I GTAC 3 cut(s) 746, 1089, 1109
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviAII CATG 6 cut(s) 235, 734, 1202, 1286, 1606, 1695
CviQI GTAC 3 cut(s) 746, 1089, 1109
DdeI CTNAG 8 cut(s) 180, 241, 346, 489, 501, 530, 1077, 1558
DpnI GATC 6 cut(s) 361, 414, 469, 792, 1146, 1475
DpnII GATC 6 cut(s) 359, 412, 467, 790, 1144, 1473
DraI TTTAAA 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 1198
Eam1104I CTCTTC 4 cut(s) 375, 468, 1323, 1564
EarI CTCTTC 4 cut(s) 375, 468, 1323, 1564
Eco130I CCWWGG 1 cut(s) 1182
Eco47I GGWCC 2 cut(s) 251, 902
Eco57I CTGAAG 3 cut(s) 438, 492, 1407
EcoRII CCWGG 4 cut(s) 52, 267, 1018, 1096
EcoT14I CCWWGG 1 cut(s) 1182
ErhI CCWWGG 1 cut(s) 1182
FaeI CATG 6 cut(s) 238, 737, 1205, 1289, 1609, 1698
FalI AAGNNNNNCTT 6 cut(s) 589, 621, 795, 827, 1541, 1573
FatI CATG 6 cut(s) 234, 733, 1201, 1285, 1605, 1694
FauI CCCGC 2 cut(s) 1050, 1521
FblI GTMKAC 1 cut(s) 807
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 6 cut(s) 719, 911, 1199, 1457, 1544, 1601
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 516
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 4 cut(s) 107, 1017, 1200, 1361
HapII CCGG 3 cut(s) 30, 155, 1442
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 517
Hin1II CATG 6 cut(s) 238, 737, 1205, 1289, 1609, 1698
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 3 cut(s) 30, 155, 1442
HphI GGTGA 3 cut(s) 68, 257, 422
Hpy166II GTNNAC 7 cut(s) 265, 367, 808, 964, 1163, 1300, 1729
Hpy188III TCNNGA 5 cut(s) 179, 308, 416, 465, 613
Hpy8I GTNNAC 7 cut(s) 265, 367, 808, 964, 1163, 1300, 1729
HpyAV CCTTC 6 cut(s) 499, 691, 1011, 1408, 1554, 1653
HpyCH4III ACNGT 7 cut(s) 371, 395, 679, 852, 1028, 1297, 1480
HpyCH4IV ACGT 1 cut(s) 780
HpyCH4V TGCA 3 cut(s) 199, 641, 856
HpyF3I CTNAG 8 cut(s) 180, 241, 346, 489, 501, 530, 1077, 1558
HpySE526I ACGT 1 cut(s) 780
Hsp92II CATG 6 cut(s) 238, 737, 1205, 1289, 1609, 1698
HspAI GCGC 1 cut(s) 515
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 6 cut(s) 359, 412, 467, 790, 1144, 1473
LmnI GCTCC 1 cut(s) 1546
LweI GCATC 2 cut(s) 436, 1579
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 780
MaeIII GTNAC 4 cut(s) 56, 275, 518, 938
MalI GATC 6 cut(s) 361, 414, 469, 792, 1146, 1475
MboI GATC 6 cut(s) 359, 412, 467, 790, 1144, 1473
MfeI CAATTG 1 cut(s) 773
MflI RGATCY 3 cut(s) 359, 467, 1144
MhlI GDGCHC 1 cut(s) 1543
MlsI TGGCCA 1 cut(s) 1200
MluCI AATT 7 cut(s) 212, 620, 663, 726, 773, 912, 1214
MluNI TGGCCA 1 cut(s) 1200
MlyI GAGTC 7 cut(s) 53, 160, 323, 338, 946, 1199, 1620
MmeI TCCRAC 1 cut(s) 121
Mox20I TGGCCA 1 cut(s) 1200
MscI TGGCCA 1 cut(s) 1200
MseI TTAA 3 cut(s) 173, 366, 888
MslI CAYNNNNRTG 3 cut(s) 83, 738, 1284
Msp20I TGGCCA 1 cut(s) 1200
MspA1I CMGCKG 1 cut(s) 1076
MspI CCGG 3 cut(s) 30, 155, 1442
MspR9I CCNGG 5 cut(s) 30, 54, 269, 1020, 1098
MunI CAATTG 1 cut(s) 773
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 4 cut(s) 54, 269, 1020, 1098
MvnI CGCG 1 cut(s) 517
NciI CCSGG 1 cut(s) 30
NdeII GATC 6 cut(s) 359, 412, 467, 790, 1144, 1473
NlaIII CATG 6 cut(s) 238, 737, 1205, 1289, 1609, 1698
NlaIV GGNNCC 3 cut(s) 106, 904, 1146
NmuCI GTSAC 3 cut(s) 56, 518, 938
NspI RCATGY 2 cut(s) 737, 1609
PaeI GCATGC 1 cut(s) 1609
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 5 cut(s) 320, 455, 461, 554, 722
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 7 cut(s) 53, 159, 322, 338, 945, 1199, 1619
PpsI GAGTC 7 cut(s) 53, 159, 322, 338, 945, 1199, 1619
Psp6I CCWGG 4 cut(s) 52, 267, 1018, 1096
PspGI CCWGG 4 cut(s) 52, 267, 1018, 1096
PspN4I GGNNCC 3 cut(s) 106, 904, 1146
PspPI GGNCC 4 cut(s) 105, 251, 902, 1016
PsrI GAACNNNNNNTAC 2 cut(s) 667, 699
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 3 cut(s) 359, 467, 1144
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 3 cut(s) 747, 1090, 1110
RsaNI GTAC 3 cut(s) 746, 1089, 1109
RseI CAYNNNNRTG 3 cut(s) 83, 738, 1284
SaqAI TTAA 3 cut(s) 173, 366, 888
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 6 cut(s) 359, 412, 467, 790, 1144, 1473
Sau96I GGNCC 4 cut(s) 105, 251, 902, 1016
SchI GAGTC 7 cut(s) 53, 160, 323, 338, 946, 1199, 1620
ScrFI CCNGG 5 cut(s) 30, 54, 269, 1020, 1098
SduI GDGCHC 1 cut(s) 1543
SexAI ACCWGGT 1 cut(s) 52
SfaNI GCATC 2 cut(s) 436, 1579
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 2 cut(s) 251, 902
SmiMI CAYNNNNRTG 3 cut(s) 83, 738, 1284
SphI GCATGC 1 cut(s) 1609
Sse9I AATT 7 cut(s) 212, 620, 663, 726, 773, 912, 1214
SsiI CCGC 5 cut(s) 108, 959, 1057, 1528, 1555
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 5 cut(s) 28, 52, 267, 1018, 1096
StyI CCWWGG 1 cut(s) 1182
TaaI ACNGT 7 cut(s) 371, 395, 679, 852, 1028, 1297, 1480
TaiI ACGT 1 cut(s) 783
TaqI TCGA 5 cut(s) 83, 295, 1419, 1599, 1713
TasI AATT 7 cut(s) 212, 620, 663, 726, 773, 912, 1214
TatI WGTACW 3 cut(s) 745, 1088, 1108
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 5 cut(s) 320, 455, 461, 554, 722
Tru1I TTAA 3 cut(s) 173, 366, 888
Tru9I TTAA 3 cut(s) 173, 366, 888
TscAI CASTG 7 cut(s) 137, 376, 708, 1033, 1411, 1483, 1543
TseFI GTSAC 3 cut(s) 56, 518, 938
Tsp45I GTSAC 3 cut(s) 56, 518, 938
TspDTI ATGAA 6 cut(s) 243, 388, 779, 1239, 1248, 1472
TspGWI ACGGA 3 cut(s) 783, 1022, 1336
TspRI CASTG 7 cut(s) 137, 376, 708, 1033, 1411, 1483, 1543
VpaK11BI GGWCC 2 cut(s) 251, 902
XapI RAATTY 2 cut(s) 212, 1214
XceI RCATGY 2 cut(s) 737, 1609
XcmI CCANNNNNNNNNTGG 2 cut(s) 137, 1692
XmiI GTMKAC 1 cut(s) 807
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.