MD00G1063900.v1.1

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
11970170 .. 11975317
5148 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1063900.v1.1.491

Sequence Viewer

Length: 2163 bp
ATGGCTTTCTGGGGAGTCGAAGTGAAACCCGGAAATCCTTTCACTCACATATTTGATGGCTTGAAAGGACGCCTTCACGTTTCAATGGCCACACTGGGGAATGGGACTGCGACGAAAAAAAGCACACTTCAGTGTAATGTGGGAAACAAGAGTCCTGTTTATCTATGCTCCTTGTTTCCTGAGAAGGCTGAGTCATTGCAAATAAATGTGGAGTTTGAAGAGTGTGAGGAAGTCATCTTCTCAGTTCTTGGTCCTCGGAGTGTTCACCTATCTGGCCACTATCTTCCTCGTCACCAACATCACAATTTTGATGATGATAATTCAGAATCTTATGGGGAAGATATTGCTAATTCCGAAACCAAGATGTCTGTTGATAGTGAAGAAGACAAGTATGAAGATAGTTTTATTAATGATGATGACCCAGAAGTCTTCCCAGCTTCTCCTGTTCTTGATAGTGAAGAGGAGCTTTTGGACGAGCATAAACCTCATAATGGCAAGGGCCATCGAAGACGACTTCGGAAGATGTACCAAGTGAGCGAGTCCGAAGTGGAGGGTGAAGATGATGACAGATGCCTAATTTCCTCTTTGTACAAGACAAAATCCAGTACTAGAAACACAACAGAGGAAGTTGAAGAAAAAGTTGACAAGAGAGCCGCAGATACCACTACTAGCAATGAAACAGAGGATGGTGTCTTTAATGCTACTGAAACAATGAACGATGGTGATGATGTGGATGTAGATGGTCAGTTGAAAAGGCAATTTGACCAGCCAGTAGATACCTTCCTACCTTCTTCTGAAGAAGGCCTTGAAATTGGTGGAACACCAAAGAAAAAAAGGAAAGAACGGCTGGATGATAAAGCATTTGAATCTGGTTTTCGTGAAAAAGAGGACGAAGCCCAAAATGATGACACCAAAGTTGAAAATAGGACCCAAAATTTGTGTGTGGAGGATGGACAAGAACAGAAGGTGGCCAATCATATCGCACTTGAAGGGCCAGATGATTTTTCAAAGCCTTCAACAGAGGTCAACCTTGAAAATGATGGAAAACTGAAGAAAAAAAGGAAAGAGCGGCCAGAAGATAAAGCACTTAAAGCTGGTATCCTTGAAAAGGAGGATGAAAAACCCCAGAAAGATGACACCAGAGCCAAAAATAGGATCCAAAACTTGTGTGTGGAGGATGGACAAGAACAGATAGTGGCCAACCATATTGCACCTGAAGGGCCAGATGATTTCCCAAAGCCTTCAACAGAGGTCAACCTTGAAAATGGTGGAAAGCTGAAGAAAAAATGGAAAGAACGGCCAAAGGATAAAGCACTTGAAAAGGTGGACGAAGCCCAGAAAGATGACACTAGAGCCCAAATTCAGACCCAAATTTTGTGCGTTATGGATGGACAAGAACAGAAGGTGGCCAAACATATTGTACCTGAGGGGCCAGATGATTTGTCAAAGCCTTCAATAGAGGTCAACCTTGAAAATGGTGAAAGGCCAAAGAAGAAAAGGAAGAAGCGTGTGGAGGGGAAAATATTGGAGGTTGTCTGCACTAACCTTGATGATGTTGTTAAAGAGGATAAAGGGCAGCAGGATGAGGCAAGGGGTGGCATCTGCCCAGATCTACCTGTGAGGAGTGAGCAAAATCAGCAGTCAGCCAAGGATGGGAATTCTGGCCATGATTCTGGTAGATTTGTTGATGGTCAATCTGATGAAAAGAAAGTTAAAAAGAAGAAGAAGAAAAGTAAAACCGAAGCACATGAGGTAGCTGGGAACACAGATGTGCCTCTCTTGTCAGCAGAAGATAATGCTAATGCCAAGTCATCTCAAGTTAAGACCTTCCCAAGTGGATTAAGAATTGAGGAGTTAGAAGCTGGAAAACCAGATGGCAAAGTTGCCACATCGGGGAAAAAGATAAGTGTTCACTATGTTGGCAAGTTGAAAGAGAACGGCAAGGTAATGGACTCAACTGACAGCAGTGCTCCTTACAGGTTTCGCTTAGGCAAAGGGGAAGTTATAGATGGTTGGGATGTTGGCATTGACGGTATGCGAGTTGGTGAAAAAAGAAGACTTGTTATACCCCCGTCATTGGCCTATGGGAGTAGAGGAGATGGTGCAGGTATACCACCAAACTCATGGCTGGAATATGATATTGAATTAGTGAAAGCTCGTTAA

Protein Analysis

721

Amino Acids

80.33

Weight (kDa)

5.13

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 94 2.2e-21 Nucleoplasmin-like domain
FKBP_C PF00254 629 - 717 7.2e-31 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 2096
AccBSI CCGCTC 1 cut(s) 1069
AccI GTMKAC 1 cut(s) 2110
AciI CCGC 2 cut(s) 654, 1069
AclWI GGATC 2 cut(s) 1150, 1163
AcoI YGGCCR 8 cut(s) 87, 274, 969, 1070, 1197, 1298, 1407, 1663
AcsI RAATTY 4 cut(s) 934, 1359, 1371, 1657
AcuI CTGAAG 5 cut(s) 113, 816, 1070, 1236, 1298
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 4 cut(s) 527, 590, 607, 1422
AfiI CCNNNNNNNGG 7 cut(s) 96, 491, 1108, 1152, 1653, 1893, 2077
AleI CACNNNNGTG 2 cut(s) 130, 1769
AluBI AGCT 7 cut(s) 437, 466, 1094, 1276, 1757, 1862, 2156
AluI AGCT 7 cut(s) 437, 466, 1094, 1276, 1757, 1862, 2156
Alw21I GWGCWC 1 cut(s) 1972
AlwI GGATC 2 cut(s) 1150, 1163
ApeKI GCWGC 1 cut(s) 1576
ApoI RAATTY 4 cut(s) 934, 1359, 1371, 1657
ArsI GACNNNNNNTTYG 4 cut(s) 919, 951, 1357, 1389
AseI ATTAAT 1 cut(s) 408
AspS9I GGNCC 6 cut(s) 251, 499, 927, 992, 1220, 1430
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 6 cut(s) 257, 284, 566, 734, 1490, 2057
AvaII GGWCC 2 cut(s) 251, 927
AxyI CCTNAGG 1 cut(s) 1425
BalI TGGCCA 6 cut(s) 89, 276, 971, 1199, 1409, 1665
BamHI GGATCC 1 cut(s) 1155
BanII GRGCYC 1 cut(s) 1357
BbsI GAAGAC 4 cut(s) 390, 421, 514, 2062
Bbv12I GWGCWC 1 cut(s) 1972
BbvI GCAGC 1 cut(s) 1588
BceAI ACGGC 3 cut(s) 860, 1313, 1954
BciVI GTATCC 1 cut(s) 1109
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 3 cut(s) 609, 669, 1350
BfuAI ACCTGC 1 cut(s) 2096
BfuI GTATCC 1 cut(s) 1109
BglII AGATCT 1 cut(s) 1609
BisI GCNGC 3 cut(s) 654, 1070, 1577
BlsI GCNGC 3 cut(s) 655, 1071, 1578
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 2 cut(s) 251, 927
BmgT120I GGNCC 6 cut(s) 251, 499, 927, 992, 1220, 1430
BmiI GGNNCC 3 cut(s) 929, 1157, 1431
BmrFI CCNGG 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 104
BmsI GCATC 2 cut(s) 560, 1608
BmuI ACTGGG 1 cut(s) 104
BpiI GAAGAC 4 cut(s) 390, 421, 514, 2062
Bpu10I CCTNAGC 1 cut(s) 1987
BpuEI CTTGAG 1 cut(s) 1800
BpuMI CCSGG 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 254, 1647
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 7 cut(s) 96, 491, 1108, 1152, 1653, 1893, 2077
Bse1I ACTGG 3 cut(s) 99, 603, 770
Bse21I CCTNAGG 1 cut(s) 1425
Bse3DI GCAATG 2 cut(s) 194, 679
BseDI CCNNGG 2 cut(s) 254, 1647
BseLI CCNNNNNNNGG 7 cut(s) 96, 491, 1108, 1152, 1653, 1893, 2077
BseMI GCAATG 2 cut(s) 194, 679
BseMII CTCAG 4 cut(s) 171, 180, 255, 1416
BseNI ACTGG 3 cut(s) 99, 603, 770
BseRI GAGGAG 4 cut(s) 476, 1636, 1865, 2109
BseXI GCAGC 1 cut(s) 1588
BseYI CCCAGC 2 cut(s) 433, 1757
BsgI GTGCAG 2 cut(s) 1522, 2124
BsiHKAI GWGCWC 1 cut(s) 1972
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 7 cut(s) 96, 491, 1108, 1152, 1653, 1893, 2077
BsmFI GGGAC 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 1357, 1972
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 2 cut(s) 1155, 1609
BspACI CCGC 2 cut(s) 654, 1069
BspCNI CTCAG 4 cut(s) 172, 181, 254, 1417
BspLI GGNNCC 3 cut(s) 929, 1157, 1431
BspMI ACCTGC 1 cut(s) 2096
BspPI GGATC 2 cut(s) 1150, 1163
BsrBI CCGCTC 1 cut(s) 1069
BsrDI GCAATG 2 cut(s) 194, 679
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 3 cut(s) 99, 603, 770
BssECI CCNNGG 2 cut(s) 254, 1647
BssMI GATC 2 cut(s) 1155, 1609
BssNAI GTATAC 1 cut(s) 2111
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 1647
Bst1107I GTATAC 1 cut(s) 2111
Bst4CI ACNGT 1 cut(s) 2033
Bst6I CTCTTC 2 cut(s) 213, 453
BstACI GRCGYC 1 cut(s) 70
BstAUI TGTACA 1 cut(s) 588
BstDEI CTNAG 5 cut(s) 180, 189, 241, 1425, 1987
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstKTI GATC 2 cut(s) 1158, 1612
BstMBI GATC 2 cut(s) 1155, 1609
BstMWI GCNNNNNNNGC 2 cut(s) 1091, 1636
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 1588
BstV2I GAAGAC 4 cut(s) 390, 421, 514, 2062
BstX2I RGATCY 2 cut(s) 1155, 1609
BstXI CCANNNNNNTGG 2 cut(s) 1673, 2124
BstYI RGATCY 2 cut(s) 1155, 1609
BstZ17I GTATAC 1 cut(s) 2111
Bsu36I CCTNAGG 1 cut(s) 1425
BsuI GTATCC 1 cut(s) 1109
BtsI GCAGTG 1 cut(s) 1972
BtsIMutI CAGTG 3 cut(s) 92, 137, 1972
BveI ACCTGC 1 cut(s) 2096
Cfr13I GGNCC 6 cut(s) 251, 499, 927, 992, 1220, 1430
CseI GACGC 1 cut(s) 78
Csp6I GTAC 4 cut(s) 526, 589, 606, 1421
CviAII CATG 3 cut(s) 1667, 1748, 2124
CviQI GTAC 4 cut(s) 526, 589, 606, 1421
DdeI CTNAG 5 cut(s) 180, 189, 241, 1425, 1987
DpnI GATC 2 cut(s) 1157, 1611
DpnII GATC 2 cut(s) 1155, 1609
DrdI GACNNNNNNGTC 1 cut(s) 425
DseDI GACNNNNNNGTC 1 cut(s) 425
EaeI YGGCCR 8 cut(s) 87, 274, 969, 1070, 1197, 1298, 1407, 1663
Eam1104I CTCTTC 2 cut(s) 213, 453
EarI CTCTTC 2 cut(s) 213, 453
Eco130I CCWWGG 1 cut(s) 1647
Eco147I AGGCCT 1 cut(s) 804
Eco24I GRGCYC 1 cut(s) 1357
Eco47I GGWCC 2 cut(s) 251, 927
Eco57I CTGAAG 5 cut(s) 113, 816, 1070, 1236, 1298
Eco81I CCTNAGG 1 cut(s) 1425
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoO109I RGGNCCY 1 cut(s) 927
EcoRI GAATTC 1 cut(s) 1657
EcoT14I CCWWGG 1 cut(s) 1647
EcoT38I GRGCYC 1 cut(s) 1357
ErhI CCWWGG 1 cut(s) 1647
FaeI CATG 3 cut(s) 1670, 1751, 2127
FalI AAGNNNNNCTT 6 cut(s) 57, 89, 450, 482, 789, 821
FaqI GGGAC 1 cut(s) 118
FatI CATG 3 cut(s) 1666, 1747, 2123
FblI GTMKAC 1 cut(s) 2110
Fnu4HI GCNGC 3 cut(s) 654, 1070, 1577
FriOI GRGCYC 1 cut(s) 1357
Fsp4HI GCNGC 3 cut(s) 654, 1070, 1577
FspBI CTAG 3 cut(s) 609, 669, 1350
GluI GCNGC 3 cut(s) 654, 1070, 1577
GsaI CCCAGC 2 cut(s) 437, 1761
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 3 cut(s) 1670, 1751, 2127
HincII GTYRAC 4 cut(s) 643, 1027, 1255, 1465
HindII GTYRAC 4 cut(s) 643, 1027, 1255, 1465
HinfI GANTC 8 cut(s) 15, 151, 191, 326, 539, 866, 1670, 1952
HpaII CCGG 1 cut(s) 30
HphI GGTGA 6 cut(s) 257, 284, 566, 734, 1490, 2057
Hpy166II GTNNAC 8 cut(s) 265, 643, 1027, 1255, 1327, 1465, 1912, 2111
Hpy188I TCNGA 8 cut(s) 258, 325, 355, 519, 544, 796, 1365, 1699
Hpy188III TCNNGA 3 cut(s) 179, 449, 878
Hpy8I GTNNAC 8 cut(s) 265, 643, 1027, 1255, 1327, 1465, 1912, 2111
Hpy99I CGWCG 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 2033
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 4 cut(s) 199, 1211, 1539, 2105
HpyF10VI GCNNNNNNNGC 2 cut(s) 1091, 1636
HpyF3I CTNAG 5 cut(s) 180, 189, 241, 1425, 1987
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 3 cut(s) 1670, 1751, 2127
Kzo9I GATC 2 cut(s) 1155, 1609
LmnI GCTCC 3 cut(s) 173, 463, 1975
Lsp1109I GCAGC 1 cut(s) 1588
LweI GCATC 2 cut(s) 560, 1608
MaeI CTAG 3 cut(s) 609, 669, 1350
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 1157, 1611
MbiI CCGCTC 1 cut(s) 1069
MboI GATC 2 cut(s) 1155, 1609
MflI RGATCY 2 cut(s) 1155, 1609
MhlI GDGCHC 2 cut(s) 1357, 1972
MlsI TGGCCA 6 cut(s) 89, 276, 971, 1199, 1409, 1665
MluNI TGGCCA 6 cut(s) 89, 276, 971, 1199, 1409, 1665
MlyI GAGTC 5 cut(s) 24, 160, 200, 548, 1946
Mox20I TGGCCA 6 cut(s) 89, 276, 971, 1199, 1409, 1665
MscI TGGCCA 6 cut(s) 89, 276, 971, 1199, 1409, 1665
MseI TTAA 8 cut(s) 408, 696, 1089, 1560, 1713, 1821, 1841, 2161
MslI CAYNNNNRTG 2 cut(s) 130, 1769
Msp20I TGGCCA 6 cut(s) 89, 276, 971, 1199, 1409, 1665
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 1091, 1636
NciI CCSGG 1 cut(s) 30
NdeII GATC 2 cut(s) 1155, 1609
NlaIII CATG 3 cut(s) 1670, 1751, 2127
NlaIV GGNNCC 3 cut(s) 929, 1157, 1431
NmuCI GTSAC 1 cut(s) 290
OliI CACNNNNGTG 2 cut(s) 130, 1769
PceI AGGCCT 1 cut(s) 804
PfeI GAWTC 3 cut(s) 326, 866, 1670
PkrI GCNGC 3 cut(s) 655, 1071, 1578
PleI GAGTC 5 cut(s) 23, 159, 199, 547, 1946
PpsI GAGTC 5 cut(s) 23, 159, 199, 547, 1946
PpuMI RGGWCCY 1 cut(s) 927
PshBI ATTAAT 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 927
PspFI CCCAGC 2 cut(s) 433, 1757
PspN4I GGNNCC 3 cut(s) 929, 1157, 1431
PspPI GGNCC 6 cut(s) 251, 499, 927, 992, 1220, 1430
PspPPI RGGWCCY 1 cut(s) 927
PsuI RGATCY 2 cut(s) 1155, 1609
RsaI GTAC 4 cut(s) 527, 590, 607, 1422
RsaNI GTAC 4 cut(s) 526, 589, 606, 1421
RseI CAYNNNNRTG 2 cut(s) 130, 1769
SaqAI TTAA 8 cut(s) 408, 696, 1089, 1560, 1713, 1821, 1841, 2161
SatI GCNGC 3 cut(s) 654, 1070, 1577
Sau3AI GATC 2 cut(s) 1155, 1609
Sau96I GGNCC 6 cut(s) 251, 499, 927, 992, 1220, 1430
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 5 cut(s) 24, 160, 200, 548, 1946
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 1357, 1972
SfaNI GCATC 2 cut(s) 560, 1608
SinI GGWCC 2 cut(s) 251, 927
SmiMI CAYNNNNRTG 2 cut(s) 130, 1769
SmlI CTYRAG 1 cut(s) 1815
SmoI CTYRAG 1 cut(s) 1815
SseBI AGGCCT 1 cut(s) 804
SsiI CCGC 2 cut(s) 654, 1069
SspI AATATT 1 cut(s) 1524
SspMI CTAG 3 cut(s) 609, 669, 1350
StuI AGGCCT 1 cut(s) 804
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 1647
TaaI ACNGT 1 cut(s) 2033
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 18, 505
TatI WGTACW 2 cut(s) 588, 605
TauI GCSGC 2 cut(s) 656, 1072
TfiI GAWTC 3 cut(s) 326, 866, 1670
Tru1I TTAA 8 cut(s) 408, 696, 1089, 1560, 1713, 1821, 1841, 2161
Tru9I TTAA 8 cut(s) 408, 696, 1089, 1560, 1713, 1821, 1841, 2161
TscAI CASTG 3 cut(s) 99, 137, 1972
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 1576
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 5 cut(s) 408, 690, 728, 1131, 1716
TspRI CASTG 3 cut(s) 99, 137, 1972
VpaK11BI GGWCC 2 cut(s) 251, 927
VspI ATTAAT 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 4 cut(s) 934, 1359, 1371, 1657
XcmI CCANNNNNNNNNTGG 1 cut(s) 2121
XmiI GTMKAC 1 cut(s) 2110
XspI CTAG 3 cut(s) 609, 669, 1350
ZrmI AGTACT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.