Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007217

Physical Location & Seq

Genomic Coordinates Forward (+)

31193522 .. 31198297

Gene Structure 4776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG195400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGATGTCTAGAGAATCCTTTGGAGAAGATATTGCTGACTCAGAGACACAGAGATCTGTTAACAGTGAAGACGAAAAGTATGATGACAGTTTTATTGATGATGATGATCTTGAAGTCTTCCCATCTACTCCTGCATCTGATGCTACAGATTCTGATTCTTGTTCTGAAGAGGAGTTTTTGGCTAAGAAGAAACCTCAGAAAGGGAAGGTGCAGCACAGACAACTTAGAAAGACGTACGTAATAAGTGATTCAGAAGTTGAAAGTGAAAATGGTGATGACGACAATCACCCAATTTCCTCTTTGGTTAAGACAAAATCATCCACTGTTGAGAATGCAATACAGGAAATGGAAGAAAAAGTTGACAAGGGAACTGTTGATACCAGCAACAAGAAGGCAGTGGATGATTTTGCTACTGAATCAATTAGACATGCTGATGATGTACTTGTAGATGGTCAGTTGAAGAGGCAATTGGACCTGCCAGTTGATCTGTCTTCTAAAGTAGACCTTGAAAATGGGGGAAAGCCAAAAAGAAAAAGGAAAGAACGGCTGCAGGAGGAGAAAACAGTTGAAGCTGATGTCCTTAATAAAGAGGATGAAGCCCAGAAAAATGAGGCAAAAGCTGAAAATAGGAACCAGAATGGACAACTGATGGCAGTAAACCATAGCGGAGCTGAAATGCCAGATAACTTATCTTTGCCTTCCGCGGAGGTTGGCCTTGGAAACAGTGATAAACCAAAGAAGAAAAGGAAGAAGCGGGTGGAGGAGAAAACAGCTGAGGTTATCTGTACTAACCCTGGTAATGATATAAAAGAGGATGAGGCAAAGGGTGACTTCTGCTTGGATCCACCACTCAAAAGTGAACAAAATCAGAAGTCAGCCAAGGATGAGAGTTTTGGCCATGACTCCCATAAACTTGTTGATGAACCTGATGAAAAGAAAGTCAAAAAGAAGAAGAAGAAGAAAACCAAAACCCAATCACATGGAGAAACCGTGAACACAGATATAGCTCTCTTGTCAGTAGAAGAGAAGGTCACATCTCCCGTGGAGAATGAGGCCAATTATGTCGATGCTAAATCATCTGAAGTTAGAACCGTCCCCAGTGGATTACACATTGAGGAGTTAGAAGCAGGAGAACCAAATGGCAAAGTTGCAACCTCTGGGAAAAAGATCACTGTTCATTATGTTGGCAAGTTGAAAAAGAATGGAGAAGTAGTTGACTCGTGTGATGGTGGTCCTCCTTCTAAGTTCCGCTTAGGTCGGGGAAAAGTTATTGAGGGTTTGGATGCTGGTATTGATGGTATGCGAGTTGGTGGCAAACGAAGACTTGTTGTCCCACCTTCAATGGCTTATGGGAGCAAAGGATATGATAAAGATATACCACCAGACTCATGGCTGGTATACGATGTTGAGTTGGTGAAAGTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

475

Amino Acids

52.46

Weight (kDa)

5.17

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	384 - 472	7.9e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12340 AT3G12340 AT3G12340
fragaria_vesca	FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890
malus_domestica	MD00G1063900.v1.1
prunus_persica	Prupe.2G145400_v2.0.a1
pyrus_communis	pycom16g26260
rosa_chinensis	RchiOBHm_Chr1g0350561
rosa_laevigata	RLG00000028473
rosa_multiflora	Rmu_co8266255.1_g000001 Rmu_sc0009041.1_g000004
rosa_roxburghii	Rroxscaffold_4G00304730
rosa_rugosa	Rorug01G0212200
rosa_samantha	Rh1AG226700 Rh1BG195400 Rh1CG211500 Rh1DG223400
rosa_wichuraiana	Rw1G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	483
AccI	GTMKAC	2 cut(s)	501, 1398
AccII	CGCG	1 cut(s)	704
AciI	CCGC	5 cut(s)	666, 702, 704, 754, 1249
AclWI	GGATC	2 cut(s)	836, 849
AcoI	YGGCCR	1 cut(s)	895
AcuI	CTGAAG	2 cut(s)	186, 1101
AfaI	GTAC	3 cut(s)	236, 441, 787
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	7 cut(s)	113, 260, 460, 509, 569, 1195, 1341
AhdI	GACNNNNNGTC	1 cut(s)	1328
AjnI	CCWGG	1 cut(s)	793
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	5 cut(s)	572, 620, 671, 773, 1007
AluI	AGCT	5 cut(s)	572, 620, 671, 773, 1007
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	836, 849
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	3 cut(s)	712, 895, 1053
ApeKI	GCWGC	2 cut(s)	211, 547
AspS9I	GGNCC	2 cut(s)	472, 1232
AsuHPI	GGTGA	4 cut(s)	278, 284, 839, 1426
AvaII	GGWCC	2 cut(s)	472, 1232
BalI	TGGCCA	1 cut(s)	897
BamHI	GGATCC	1 cut(s)	841
BauI	CACGAG	1 cut(s)	1219
BbsI	GAAGAC	4 cut(s)	75, 109, 483, 1327
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	2 cut(s)	223, 534
BccI	CCATC	5 cut(s)	130, 443, 643, 1220, 1289
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	795
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	144, 548
BfuAI	ACCTGC	1 cut(s)	483
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	2 cut(s)	212, 548
BlsI	GCNGC	2 cut(s)	213, 549
Bme1390I	CCNGG	1 cut(s)	795
Bme18I	GGWCC	2 cut(s)	472, 1232
BmeRI	GACNNNNNGTC	1 cut(s)	1328
BmgT120I	GGNCC	2 cut(s)	472, 1232
BmiI	GGNNCC	2 cut(s)	632, 843
BmrFI	CCNGG	1 cut(s)	795
BmrI	ACTGGG	1 cut(s)	1092
BmsI	GCATC	4 cut(s)	130, 143, 1057, 1273
BmuI	ACTGGG	1 cut(s)	1092
BpiI	GAAGAC	4 cut(s)	75, 109, 483, 1327
Bpu10I	CCTNAGC	2 cut(s)	774, 1252
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	5 cut(s)	702, 715, 793, 879, 1041
BsaXI	ACNNNNNCTCC	4 cut(s)	975, 1005, 1197, 1227
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	479, 1098
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	795
BseDI	CCNNGG	5 cut(s)	702, 715, 793, 879, 1041
BseGI	GGATG	6 cut(s)	317, 406, 598, 820, 889, 1288
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	3 cut(s)	54, 209, 765
BseNI	ACTGG	2 cut(s)	479, 1098
BseRI	GAGGAG	4 cut(s)	185, 569, 776, 1130
BseXI	GCAGC	2 cut(s)	223, 534
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	704
BshFI	GGCC	3 cut(s)	714, 897, 1055
BsiWI	CGTACG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	1079, 1316
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	2 cut(s)	1079, 1316
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	3 cut(s)	714, 897, 1055
Bsp143I	GATC	5 cut(s)	53, 106, 484, 841, 1167
BspACI	CCGC	5 cut(s)	666, 702, 704, 754, 1249
BspANI	GGCC	3 cut(s)	714, 897, 1055
BspCNI	CTCAG	3 cut(s)	53, 208, 766
BspFNI	CGCG	1 cut(s)	704
BspLI	GGNNCC	2 cut(s)	632, 843
BspMAI	CTGCAG	1 cut(s)	552
BspMI	ACCTGC	1 cut(s)	483
BspPI	GGATC	2 cut(s)	836, 849
BsrI	ACTGG	2 cut(s)	479, 1098
BssECI	CCNNGG	5 cut(s)	702, 715, 793, 879, 1041
BssMI	GATC	5 cut(s)	53, 106, 484, 841, 1167
BssNAI	GTATAC	1 cut(s)	1399
BssSI	CACGAG	1 cut(s)	1219
BssT1I	CCWWGG	2 cut(s)	715, 879
Bst1107I	GTATAC	1 cut(s)	1399
Bst2BI	CACGAG	1 cut(s)	1219
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	9 cut(s)	65, 89, 325, 373, 565, 725, 991, 1093, 1174
Bst6I	CTCTTC	3 cut(s)	162, 455, 1017
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	238
BstDEI	CTNAG	7 cut(s)	40, 183, 195, 224, 774, 1242, 1252
BstDSI	CCRYGG	2 cut(s)	702, 1041
BstENI	CCTNNNNNAGG	1 cut(s)	198
BstF5I	GGATG	6 cut(s)	317, 406, 598, 820, 889, 1288
BstFNI	CGCG	1 cut(s)	704
BstKTI	GATC	5 cut(s)	56, 109, 487, 844, 1170
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	5 cut(s)	53, 106, 484, 841, 1167
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	795
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	793
BstSFI	CTRYAG	2 cut(s)	144, 548
BstSNI	TACGTA	1 cut(s)	238
BstUI	CGCG	1 cut(s)	704
BstV1I	GCAGC	2 cut(s)	223, 534
BstV2I	GAAGAC	4 cut(s)	75, 109, 483, 1327
BstX2I	RGATCY	2 cut(s)	53, 841
BstXI	CCANNNNNNTGG	2 cut(s)	980, 1389
BstYI	RGATCY	2 cut(s)	53, 841
BstZ17I	GTATAC	1 cut(s)	1399
BsuRI	GGCC	3 cut(s)	714, 897, 1055
BtgI	CCRYGG	2 cut(s)	702, 1041
BtsCI	GGATG	6 cut(s)	317, 406, 598, 820, 889, 1288
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	7 cut(s)	70, 321, 402, 730, 1105, 1170, 1423
BveI	ACCTGC	1 cut(s)	483
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	472, 1232
Cfr42I	CCGCGG	1 cut(s)	705
Csp6I	GTAC	3 cut(s)	235, 440, 786
CviAII	CATG	4 cut(s)	428, 899, 980, 1389
CviQI	GTAC	3 cut(s)	235, 440, 786
DdeI	CTNAG	7 cut(s)	40, 183, 195, 224, 774, 1242, 1252
DpnI	GATC	5 cut(s)	55, 108, 486, 843, 1169
DpnII	GATC	5 cut(s)	53, 106, 484, 841, 1167
DriI	GACNNNNNGTC	1 cut(s)	1328
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	3 cut(s)	162, 455, 1017
Eam1105I	GACNNNNNGTC	1 cut(s)	1328
EarI	CTCTTC	3 cut(s)	162, 455, 1017
Eco105I	TACGTA	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	715, 879
Eco47I	GGWCC	2 cut(s)	472, 1232
Eco57I	CTGAAG	2 cut(s)	186, 1101
EcoNI	CCTNNNNNAGG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	793
EcoT14I	CCWWGG	2 cut(s)	715, 879
ErhI	CCWWGG	2 cut(s)	715, 879
FaeI	CATG	4 cut(s)	431, 902, 983, 1392
FalI	AAGNNNNNCTT	6 cut(s)	489, 521, 815, 847, 1235, 1267
FaqI	GGGAC	2 cut(s)	1079, 1316
FatI	CATG	4 cut(s)	427, 898, 979, 1388
FauI	CCCGC	1 cut(s)	747
FblI	GTMKAC	2 cut(s)	501, 1398
Fnu4HI	GCNGC	2 cut(s)	212, 548
FokI	GGATG	6 cut(s)	304, 413, 605, 827, 896, 1295
Fsp4HI	GCNGC	2 cut(s)	212, 548
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	2 cut(s)	212, 548
HaeIII	GGCC	3 cut(s)	714, 897, 1055
Hin1II	CATG	4 cut(s)	431, 902, 983, 1392
HincII	GTYRAC	3 cut(s)	61, 361, 1216
HindII	GTYRAC	3 cut(s)	61, 361, 1216
HinfI	GANTC	9 cut(s)	14, 38, 149, 155, 248, 416, 902, 1217, 1385
HpaI	GTTAAC	1 cut(s)	61
HphI	GGTGA	4 cut(s)	278, 284, 839, 1426
Hpy166II	GTNNAC	9 cut(s)	61, 361, 502, 658, 860, 994, 1216, 1399, 1423
Hpy188I	TCNGA	8 cut(s)	43, 139, 154, 166, 198, 253, 870, 1081
Hpy188III	TCNNGA	2 cut(s)	9, 110
Hpy8I	GTNNAC	9 cut(s)	61, 361, 502, 658, 860, 994, 1216, 1399, 1423
HpyAV	CCTTC	6 cut(s)	199, 385, 708, 1021, 1248, 1347
HpyCH4III	ACNGT	9 cut(s)	65, 89, 325, 373, 565, 725, 991, 1093, 1174
HpyCH4IV	ACGT	2 cut(s)	233, 237
HpyCH4V	TGCA	5 cut(s)	134, 211, 335, 550, 1151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	7 cut(s)	40, 183, 195, 224, 774, 1242, 1252
HpySE526I	ACGT	2 cut(s)	233, 237
Hsp92II	CATG	4 cut(s)	431, 902, 983, 1392
KspAI	GTTAAC	1 cut(s)	61
KspI	CCGCGG	1 cut(s)	705
Kzo9I	GATC	5 cut(s)	53, 106, 484, 841, 1167
LmnI	GCTCC	2 cut(s)	668, 1353
Lsp1109I	GCAGC	2 cut(s)	223, 534
LweI	GCATC	4 cut(s)	130, 143, 1057, 1273
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	2 cut(s)	233, 237
MaeIII	GTNAC	2 cut(s)	827, 1030
MalI	GATC	5 cut(s)	55, 108, 486, 843, 1169
MboI	GATC	5 cut(s)	53, 106, 484, 841, 1167
MfeI	CAATTG	1 cut(s)	467
MflI	RGATCY	2 cut(s)	53, 841
MlsI	TGGCCA	1 cut(s)	897
MluCI	AATT	4 cut(s)	291, 420, 467, 1057
MluNI	TGGCCA	1 cut(s)	897
MlyI	GAGTC	4 cut(s)	32, 896, 1211, 1379
Mox20I	TGGCCA	1 cut(s)	897
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	3 cut(s)	60, 306, 582
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	897
MspA1I	CMGCKG	2 cut(s)	704, 773
MspR9I	CCNGG	1 cut(s)	795
MunI	CAATTG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	795
MvnI	CGCG	1 cut(s)	704
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	5 cut(s)	53, 106, 484, 841, 1167
NlaIII	CATG	4 cut(s)	431, 902, 983, 1392
NlaIV	GGNNCC	2 cut(s)	632, 843
NmuCI	GTSAC	2 cut(s)	827, 1030
NspI	RCATGY	1 cut(s)	431
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	5 cut(s)	14, 149, 155, 248, 416
Pfl23II	CGTACG	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	213, 549
PleI	GAGTC	4 cut(s)	32, 896, 1211, 1379
PpsI	GAGTC	4 cut(s)	32, 896, 1211, 1379
Ppu21I	YACGTR	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	793
PspLI	CGTACG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	632, 843
PspPI	GGNCC	2 cut(s)	472, 1232
PsrI	GAACNNNNNNTAC	2 cut(s)	361, 393
PstI	CTGCAG	1 cut(s)	552
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	53, 841
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	3 cut(s)	236, 441, 787
RsaNI	GTAC	3 cut(s)	235, 440, 786
RseI	CAYNNNNRTG	1 cut(s)	432
SacII	CCGCGG	1 cut(s)	705
SaqAI	TTAA	3 cut(s)	60, 306, 582
SatI	GCNGC	2 cut(s)	212, 548
Sau3AI	GATC	5 cut(s)	53, 106, 484, 841, 1167
Sau96I	GGNCC	2 cut(s)	472, 1232
SchI	GAGTC	4 cut(s)	32, 896, 1211, 1379
ScrFI	CCNGG	1 cut(s)	795
SfaNI	GCATC	4 cut(s)	130, 143, 1057, 1273
SfcI	CTRYAG	2 cut(s)	144, 548
Sfr303I	CCGCGG	1 cut(s)	705
SgrBI	CCGCGG	1 cut(s)	705
SinI	GGWCC	2 cut(s)	472, 1232
SmiMI	CAYNNNNRTG	1 cut(s)	432
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	4 cut(s)	291, 420, 467, 1057
SsiI	CCGC	5 cut(s)	666, 702, 704, 754, 1249
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	793
StyI	CCWWGG	2 cut(s)	715, 879
TaaI	ACNGT	9 cut(s)	65, 89, 325, 373, 565, 725, 991, 1093, 1174
TaiI	ACGT	2 cut(s)	236, 240
TaqI	TCGA	1 cut(s)	1065
TasI	AATT	4 cut(s)	291, 420, 467, 1057
TatI	WGTACW	2 cut(s)	439, 785
TfiI	GAWTC	5 cut(s)	14, 149, 155, 248, 416
Tru1I	TTAA	3 cut(s)	60, 306, 582
Tru9I	TTAA	3 cut(s)	60, 306, 582
TscAI	CASTG	6 cut(s)	70, 328, 402, 730, 1105, 1177
TseFI	GTSAC	2 cut(s)	827, 1030
TseI	GCWGC	2 cut(s)	211, 547
Tsp45I	GTSAC	2 cut(s)	827, 1030
TspDTI	ATGAA	4 cut(s)	609, 936, 945, 1166
TspRI	CASTG	6 cut(s)	70, 328, 402, 730, 1105, 1177
VpaK11BI	GGWCC	2 cut(s)	472, 1232
XagI	CCTNNNNNAGG	1 cut(s)	198
XbaI	TCTAGA	1 cut(s)	8
XceI	RCATGY	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1386
XmiI	GTMKAC	2 cut(s)	501, 1398
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.