Peptidyl-prolyl cis-trans isomerase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12340 AT3G12340 AT3G12340 |
| fragaria_vesca | FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 |
| malus_domestica | MD00G1063900.v1.1 |
| prunus_persica | Prupe.2G145400_v2.0.a1 |
| pyrus_communis | pycom16g26260 |
| rosa_chinensis | RchiOBHm_Chr1g0350561 |
| rosa_laevigata | RLG00000028473 |
| rosa_multiflora | Rmu_co8266255.1_g000001 Rmu_sc0009041.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00304730 |
| rosa_rugosa | Rorug01G0212200 |
| rosa_samantha | Rh1AG226700 Rh1BG195400 Rh1CG211500 Rh1DG223400 |
| rosa_wichuraiana | Rw1G019590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 795, 1692 |
| AccII | CGCG | 1 cut(s) | 998 |
| AciI | CCGC | 5 cut(s) | 520, 996, 998, 1048, 1543 |
| AclWI | GGATC | 2 cut(s) | 1130, 1143 |
| AcoI | YGGCCR | 1 cut(s) | 1189 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcuI | CTGAAG | 2 cut(s) | 495, 1395 |
| AfaI | GTAC | 3 cut(s) | 545, 735, 1081 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 69, 509 |
| AgsI | TTSAA | 9 cut(s) | 20, 84, 422, 569, 754, 803, 863, 1489, 1635 |
| AjnI | CCWGG | 2 cut(s) | 267, 1087 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 746, 778 |
| AluBI | AGCT | 4 cut(s) | 866, 965, 1067, 1301 |
| AluI | AGCT | 4 cut(s) | 866, 965, 1067, 1301 |
| Alw26I | GTCTC | 1 cut(s) | 344 |
| AlwI | GGATC | 2 cut(s) | 1130, 1143 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 461, 914 |
| AoxI | GGCC | 4 cut(s) | 296, 1006, 1189, 1347 |
| ApeKI | GCWGC | 2 cut(s) | 107, 841 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AspS9I | GGNCC | 3 cut(s) | 251, 766, 1526 |
| AsuC2I | CCSGG | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 4 cut(s) | 257, 587, 1133, 1720 |
| AvaII | GGWCC | 3 cut(s) | 251, 766, 1526 |
| BalI | TGGCCA | 1 cut(s) | 1191 |
| BamHI | GGATCC | 1 cut(s) | 1135 |
| BauI | CACGAG | 1 cut(s) | 1513 |
| BbsI | GAAGAC | 4 cut(s) | 381, 418, 777, 1621 |
| BbvCI | CCTCAGC | 1 cut(s) | 1068 |
| BbvI | GCAGC | 2 cut(s) | 94, 828 |
| BccI | CCATC | 5 cut(s) | 439, 737, 1514, 1540, 1583 |
| BceAI | ACGGC | 2 cut(s) | 86, 854 |
| BciT130I | CCWGG | 2 cut(s) | 269, 1089 |
| BciVI | GTATCC | 1 cut(s) | 186 |
| BcnI | CCSGG | 1 cut(s) | 30 |
| BcoDI | GTCTC | 1 cut(s) | 344 |
| BfaI | CTAG | 1 cut(s) | 284 |
| BfmI | CTRYAG | 2 cut(s) | 453, 842 |
| BfuI | GTATCC | 1 cut(s) | 186 |
| BglII | AGATCT | 1 cut(s) | 359 |
| BisI | GCNGC | 3 cut(s) | 108, 521, 842 |
| BlsI | GCNGC | 3 cut(s) | 109, 522, 843 |
| Bme1390I | CCNGG | 3 cut(s) | 30, 269, 1089 |
| Bme18I | GGWCC | 3 cut(s) | 251, 766, 1526 |
| BmgT120I | GGNCC | 3 cut(s) | 251, 766, 1526 |
| BmiI | GGNNCC | 1 cut(s) | 1137 |
| BmrFI | CCNGG | 3 cut(s) | 30, 269, 1089 |
| BmrI | ACTGGG | 1 cut(s) | 1386 |
| BmsI | GCATC | 5 cut(s) | 439, 452, 933, 1351, 1567 |
| BmuI | ACTGGG | 1 cut(s) | 1386 |
| BoxI | GACNNNNGTC | 1 cut(s) | 591 |
| BpiI | GAAGAC | 4 cut(s) | 381, 418, 777, 1621 |
| BpmI | CTGGAG | 1 cut(s) | 113 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1068, 1546 |
| BpuMI | CCSGG | 1 cut(s) | 30 |
| BsaAI | YACGTR | 1 cut(s) | 547 |
| BsaBI | GATNNNNATC | 1 cut(s) | 414 |
| BsaJI | CCNNGG | 6 cut(s) | 254, 996, 1009, 1087, 1173, 1335 |
| BsaWI | WCCGGW | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1491, 1521 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 69, 509 |
| Bse1I | ACTGG | 4 cut(s) | 130, 773, 947, 1392 |
| Bse8I | GATNNNNATC | 1 cut(s) | 414 |
| BseBI | CCWGG | 2 cut(s) | 269, 1089 |
| BseDI | CCNNGG | 6 cut(s) | 254, 996, 1009, 1087, 1173, 1335 |
| BseGI | GGATG | 7 cut(s) | 589, 626, 700, 892, 1114, 1183, 1582 |
| BseJI | GATNNNNATC | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 69, 509 |
| BseMII | CTCAG | 5 cut(s) | 171, 255, 360, 518, 1059 |
| BseNI | ACTGG | 4 cut(s) | 130, 773, 947, 1392 |
| BseRI | GAGGAG | 4 cut(s) | 494, 863, 1070, 1424 |
| BseXI | GCAGC | 2 cut(s) | 94, 828 |
| Bsh1236I | CGCG | 1 cut(s) | 998 |
| BshFI | GGCC | 4 cut(s) | 298, 1008, 1191, 1349 |
| BsiSI | CCGG | 2 cut(s) | 30, 155 |
| BsiWI | CGTACG | 1 cut(s) | 543 |
| BslFI | GGGAC | 1 cut(s) | 1373 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 69, 509 |
| BsmAI | GTCTC | 1 cut(s) | 344 |
| BsmFI | GGGAC | 1 cut(s) | 1373 |
| BsmI | GAATGC | 1 cut(s) | 646 |
| BsnI | GGCC | 4 cut(s) | 298, 1008, 1191, 1349 |
| Bsp143I | GATC | 6 cut(s) | 186, 359, 415, 778, 1135, 1461 |
| Bsp19I | CCATGG | 1 cut(s) | 1335 |
| BspACI | CCGC | 5 cut(s) | 520, 996, 998, 1048, 1543 |
| BspANI | GGCC | 4 cut(s) | 298, 1008, 1191, 1349 |
| BspCNI | CTCAG | 5 cut(s) | 172, 254, 359, 517, 1060 |
| BspFNI | CGCG | 1 cut(s) | 998 |
| BspLI | GGNNCC | 1 cut(s) | 1137 |
| BspMAI | CTGCAG | 1 cut(s) | 846 |
| BspPI | GGATC | 2 cut(s) | 1130, 1143 |
| BsrI | ACTGG | 4 cut(s) | 130, 773, 947, 1392 |
| BssECI | CCNNGG | 6 cut(s) | 254, 996, 1009, 1087, 1173, 1335 |
| BssMI | GATC | 6 cut(s) | 186, 359, 415, 778, 1135, 1461 |
| BssNAI | GTATAC | 1 cut(s) | 1693 |
| BssSI | CACGAG | 1 cut(s) | 1513 |
| BssT1I | CCWWGG | 3 cut(s) | 1009, 1173, 1335 |
| Bst1107I | GTATAC | 1 cut(s) | 1693 |
| Bst2BI | CACGAG | 1 cut(s) | 1513 |
| Bst2UI | CCWGG | 2 cut(s) | 269, 1089 |
| Bst4CI | ACNGT | 8 cut(s) | 371, 395, 593, 634, 859, 1019, 1387, 1468 |
| Bst6I | CTCTTC | 3 cut(s) | 471, 749, 1311 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 449 |
| BstBAI | YACGTR | 1 cut(s) | 547 |
| BstDEI | CTNAG | 9 cut(s) | 180, 241, 346, 492, 504, 533, 1068, 1536, 1546 |
| BstDSI | CCRYGG | 2 cut(s) | 996, 1335 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 507 |
| BstF5I | GGATG | 7 cut(s) | 589, 626, 700, 892, 1114, 1183, 1582 |
| BstFNI | CGCG | 1 cut(s) | 998 |
| BstKTI | GATC | 6 cut(s) | 189, 362, 418, 781, 1138, 1464 |
| BstMAI | GTCTC | 1 cut(s) | 344 |
| BstMBI | GATC | 6 cut(s) | 186, 359, 415, 778, 1135, 1461 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 449 |
| BstNI | CCWGG | 2 cut(s) | 269, 1089 |
| BstNSI | RCATGY | 1 cut(s) | 725 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 591 |
| BstSCI | CCNGG | 3 cut(s) | 28, 267, 1087 |
| BstSFI | CTRYAG | 2 cut(s) | 453, 842 |
| BstSNI | TACGTA | 1 cut(s) | 547 |
| BstUI | CGCG | 1 cut(s) | 998 |
| BstV1I | GCAGC | 2 cut(s) | 94, 828 |
| BstV2I | GAAGAC | 4 cut(s) | 381, 418, 777, 1621 |
| BstX2I | RGATCY | 2 cut(s) | 359, 1135 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1274, 1683 |
| BstYI | RGATCY | 2 cut(s) | 359, 1135 |
| BstZ17I | GTATAC | 1 cut(s) | 1693 |
| BsuI | GTATCC | 1 cut(s) | 186 |
| BsuRI | GGCC | 4 cut(s) | 298, 1008, 1191, 1349 |
| BtgI | CCRYGG | 2 cut(s) | 996, 1335 |
| BtsCI | GGATG | 7 cut(s) | 589, 626, 700, 892, 1114, 1183, 1582 |
| BtsI | GCAGTG | 1 cut(s) | 696 |
| BtsIMutI | CAGTG | 8 cut(s) | 137, 376, 630, 696, 1024, 1399, 1464, 1717 |
| CaiI | CAGNNNCTG | 2 cut(s) | 461, 914 |
| Cfr13I | GGNCC | 3 cut(s) | 251, 766, 1526 |
| Cfr42I | CCGCGG | 1 cut(s) | 999 |
| Csp6I | GTAC | 3 cut(s) | 544, 734, 1080 |
| CviAII | CATG | 6 cut(s) | 235, 722, 1193, 1274, 1336, 1683 |
| CviQI | GTAC | 3 cut(s) | 544, 734, 1080 |
| DdeI | CTNAG | 9 cut(s) | 180, 241, 346, 492, 504, 533, 1068, 1536, 1546 |
| DpnI | GATC | 6 cut(s) | 188, 361, 417, 780, 1137, 1463 |
| DpnII | GATC | 6 cut(s) | 186, 359, 415, 778, 1135, 1461 |
| EaeI | YGGCCR | 1 cut(s) | 1189 |
| Eam1104I | CTCTTC | 3 cut(s) | 471, 749, 1311 |
| EarI | CTCTTC | 3 cut(s) | 471, 749, 1311 |
| Eco105I | TACGTA | 1 cut(s) | 547 |
| Eco130I | CCWWGG | 3 cut(s) | 1009, 1173, 1335 |
| Eco47I | GGWCC | 3 cut(s) | 251, 766, 1526 |
| Eco57I | CTGAAG | 2 cut(s) | 495, 1395 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 507 |
| EcoRII | CCWGG | 2 cut(s) | 267, 1087 |
| EcoT14I | CCWWGG | 3 cut(s) | 1009, 1173, 1335 |
| ErhI | CCWWGG | 3 cut(s) | 1009, 1173, 1335 |
| FaeI | CATG | 6 cut(s) | 238, 725, 1196, 1277, 1339, 1686 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 783, 815, 1109, 1141, 1529, 1561 |
| FaqI | GGGAC | 1 cut(s) | 1373 |
| FatI | CATG | 6 cut(s) | 234, 721, 1192, 1273, 1335, 1682 |
| FauI | CCCGC | 1 cut(s) | 1041 |
| FblI | GTMKAC | 2 cut(s) | 795, 1692 |
| Fnu4HI | GCNGC | 3 cut(s) | 108, 521, 842 |
| FokI | GGATG | 7 cut(s) | 596, 613, 707, 899, 1121, 1190, 1589 |
| Fsp4HI | GCNGC | 3 cut(s) | 108, 521, 842 |
| FspBI | CTAG | 1 cut(s) | 284 |
| GluI | GCNGC | 3 cut(s) | 108, 521, 842 |
| GsuI | CTGGAG | 1 cut(s) | 113 |
| HaeIII | GGCC | 4 cut(s) | 298, 1008, 1191, 1349 |
| HapII | CCGG | 2 cut(s) | 30, 155 |
| Hin1II | CATG | 6 cut(s) | 238, 725, 1196, 1277, 1339, 1686 |
| HincII | GTYRAC | 3 cut(s) | 367, 670, 1510 |
| HindII | GTYRAC | 3 cut(s) | 367, 670, 1510 |
| HpaI | GTTAAC | 1 cut(s) | 367 |
| HpaII | CCGG | 2 cut(s) | 30, 155 |
| HphI | GGTGA | 4 cut(s) | 257, 587, 1133, 1720 |
| Hpy166II | GTNNAC | 9 cut(s) | 265, 367, 670, 796, 952, 1154, 1510, 1693, 1717 |
| Hpy188III | TCNNGA | 3 cut(s) | 179, 308, 419 |
| Hpy8I | GTNNAC | 9 cut(s) | 265, 367, 670, 796, 952, 1154, 1510, 1693, 1717 |
| Hpy99I | CGWCG | 1 cut(s) | 297 |
| HpyAV | CCTTC | 4 cut(s) | 508, 679, 1315, 1641 |
| HpyCH4III | ACNGT | 8 cut(s) | 371, 395, 593, 634, 859, 1019, 1387, 1468 |
| HpyCH4IV | ACGT | 2 cut(s) | 542, 546 |
| HpyCH4V | TGCA | 6 cut(s) | 110, 199, 443, 644, 844, 1445 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 449 |
| HpyF3I | CTNAG | 9 cut(s) | 180, 241, 346, 492, 504, 533, 1068, 1536, 1546 |
| HpySE526I | ACGT | 2 cut(s) | 542, 546 |
| Hsp92II | CATG | 6 cut(s) | 238, 725, 1196, 1277, 1339, 1686 |
| KspAI | GTTAAC | 1 cut(s) | 367 |
| KspI | CCGCGG | 1 cut(s) | 999 |
| Kzo9I | GATC | 6 cut(s) | 186, 359, 415, 778, 1135, 1461 |
| LmnI | GCTCC | 2 cut(s) | 962, 1647 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 828 |
| LweI | GCATC | 5 cut(s) | 439, 452, 933, 1351, 1567 |
| MaeI | CTAG | 1 cut(s) | 284 |
| MaeII | ACGT | 2 cut(s) | 542, 546 |
| MaeIII | GTNAC | 4 cut(s) | 275, 593, 1121, 1324 |
| MalI | GATC | 6 cut(s) | 188, 361, 417, 780, 1137, 1463 |
| MboI | GATC | 6 cut(s) | 186, 359, 415, 778, 1135, 1461 |
| MfeI | CAATTG | 1 cut(s) | 761 |
| MflI | RGATCY | 2 cut(s) | 359, 1135 |
| MlsI | TGGCCA | 1 cut(s) | 1191 |
| MluCI | AATT | 6 cut(s) | 15, 212, 600, 714, 761, 1351 |
| MluNI | TGGCCA | 1 cut(s) | 1191 |
| MlyI | GAGTC | 7 cut(s) | 53, 160, 323, 338, 1190, 1505, 1673 |
| Mox20I | TGGCCA | 1 cut(s) | 1191 |
| MscI | TGGCCA | 1 cut(s) | 1191 |
| MseI | TTAA | 2 cut(s) | 366, 876 |
| MslI | CAYNNNNRTG | 2 cut(s) | 83, 726 |
| Msp20I | TGGCCA | 1 cut(s) | 1191 |
| MspA1I | CMGCKG | 2 cut(s) | 998, 1067 |
| MspI | CCGG | 2 cut(s) | 30, 155 |
| MspR9I | CCNGG | 3 cut(s) | 30, 269, 1089 |
| MunI | CAATTG | 1 cut(s) | 761 |
| Mva1269I | GAATGC | 1 cut(s) | 646 |
| MvaI | CCWGG | 2 cut(s) | 269, 1089 |
| MvnI | CGCG | 1 cut(s) | 998 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 449 |
| NciI | CCSGG | 1 cut(s) | 30 |
| NcoI | CCATGG | 1 cut(s) | 1335 |
| NdeII | GATC | 6 cut(s) | 186, 359, 415, 778, 1135, 1461 |
| NlaIII | CATG | 6 cut(s) | 238, 725, 1196, 1277, 1339, 1686 |
| NlaIV | GGNNCC | 1 cut(s) | 1137 |
| NmuCI | GTSAC | 3 cut(s) | 593, 1121, 1324 |
| NspI | RCATGY | 1 cut(s) | 725 |
| PctI | GAATGC | 1 cut(s) | 646 |
| PfeI | GAWTC | 5 cut(s) | 320, 458, 464, 557, 710 |
| Pfl23II | CGTACG | 1 cut(s) | 543 |
| PkrI | GCNGC | 3 cut(s) | 109, 522, 843 |
| PleI | GAGTC | 7 cut(s) | 53, 159, 322, 338, 1190, 1505, 1673 |
| PpsI | GAGTC | 7 cut(s) | 53, 159, 322, 338, 1190, 1505, 1673 |
| Ppu21I | YACGTR | 1 cut(s) | 547 |
| PshAI | GACNNNNGTC | 1 cut(s) | 591 |
| Psp6I | CCWGG | 2 cut(s) | 267, 1087 |
| PspGI | CCWGG | 2 cut(s) | 267, 1087 |
| PspLI | CGTACG | 1 cut(s) | 543 |
| PspN4I | GGNNCC | 1 cut(s) | 1137 |
| PspPI | GGNCC | 3 cut(s) | 251, 766, 1526 |
| PstI | CTGCAG | 1 cut(s) | 846 |
| PstNI | CAGNNNCTG | 2 cut(s) | 461, 914 |
| PsuI | RGATCY | 2 cut(s) | 359, 1135 |
| PvuII | CAGCTG | 1 cut(s) | 1067 |
| RsaI | GTAC | 3 cut(s) | 545, 735, 1081 |
| RsaNI | GTAC | 3 cut(s) | 544, 734, 1080 |
| RseI | CAYNNNNRTG | 2 cut(s) | 83, 726 |
| SacII | CCGCGG | 1 cut(s) | 999 |
| SaqAI | TTAA | 2 cut(s) | 366, 876 |
| SatI | GCNGC | 3 cut(s) | 108, 521, 842 |
| Sau3AI | GATC | 6 cut(s) | 186, 359, 415, 778, 1135, 1461 |
| Sau96I | GGNCC | 3 cut(s) | 251, 766, 1526 |
| SchI | GAGTC | 7 cut(s) | 53, 160, 323, 338, 1190, 1505, 1673 |
| ScrFI | CCNGG | 3 cut(s) | 30, 269, 1089 |
| SfaNI | GCATC | 5 cut(s) | 439, 452, 933, 1351, 1567 |
| SfcI | CTRYAG | 2 cut(s) | 453, 842 |
| Sfr303I | CCGCGG | 1 cut(s) | 999 |
| SgrBI | CCGCGG | 1 cut(s) | 999 |
| SinI | GGWCC | 3 cut(s) | 251, 766, 1526 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 83, 726 |
| SnaBI | TACGTA | 1 cut(s) | 547 |
| Sse9I | AATT | 6 cut(s) | 15, 212, 600, 714, 761, 1351 |
| SsiI | CCGC | 5 cut(s) | 520, 996, 998, 1048, 1543 |
| SspMI | CTAG | 1 cut(s) | 284 |
| StyD4I | CCNGG | 3 cut(s) | 28, 267, 1087 |
| StyI | CCWWGG | 3 cut(s) | 1009, 1173, 1335 |
| TaaI | ACNGT | 8 cut(s) | 371, 395, 593, 634, 859, 1019, 1387, 1468 |
| TaiI | ACGT | 2 cut(s) | 545, 549 |
| TaqI | TCGA | 2 cut(s) | 189, 1359 |
| TasI | AATT | 6 cut(s) | 15, 212, 600, 714, 761, 1351 |
| TatI | WGTACW | 2 cut(s) | 733, 1079 |
| TauI | GCSGC | 1 cut(s) | 523 |
| TfiI | GAWTC | 5 cut(s) | 320, 458, 464, 557, 710 |
| Tru1I | TTAA | 2 cut(s) | 366, 876 |
| Tru9I | TTAA | 2 cut(s) | 366, 876 |
| TscAI | CASTG | 7 cut(s) | 137, 376, 637, 696, 1024, 1399, 1471 |
| TseFI | GTSAC | 3 cut(s) | 593, 1121, 1324 |
| TseI | GCWGC | 2 cut(s) | 107, 841 |
| Tsp45I | GTSAC | 3 cut(s) | 593, 1121, 1324 |
| TspDTI | ATGAA | 5 cut(s) | 243, 903, 1230, 1239, 1460 |
| TspRI | CASTG | 7 cut(s) | 137, 376, 637, 696, 1024, 1399, 1471 |
| VpaK11BI | GGWCC | 3 cut(s) | 251, 766, 1526 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 507 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XceI | RCATGY | 1 cut(s) | 725 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1680 |
| XmiI | GTMKAC | 2 cut(s) | 795, 1692 |
| XspI | CTAG | 1 cut(s) | 284 |