Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007217

Physical Location & Seq

Genomic Coordinates Forward (+)

43357784 .. 43361028

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG223400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCTTTCTGGGGAATTGAAGTGAAACCCGGAAAGCCTTTTACTCATAAACCTGATGACTCCAATGGACGGCTTCACATTTCAATGGCAACATTGGGGTTGGGGGCTGCAACCAAAAGAAGCATACTCCAGTGTAATGTAGGAAACAAGAGTCCGGTTTATCTATGTGCGTTGTATCCTGAGAAGATCGAGTGTTTGCAACTACATTTGGAATTTGACGAGGCTGATGAAGTCATGTTCTCAGTTCTTGGTCCTCGGAGTGTTCATCTGGCTGGTTACTATCTAGGTGGTCGTCGGCCTTACAATCCAGATGAGTCAGAATCCTTTGGAGAAGATATTGCTGACTCAGAGACACAGAGATCTGTTAACAGTGAAGACGAAAAGTATGATGACAGTTTTATTGATGATGATGATCTTGAAGTCTTCCCATCTACTCCTGCATCTGATGCTACAGATTCTGATTCTTGTTCTGAAGAGGAGTTTTTGGCTAAGAAGAAACCTCAGAAAGGGAAGGTGCAGCACAGACAACTTAGAAAGACGTACGTAATAAGTGATTCAGAAGTTGAAAGTGAAAATGGTGATGACGACAATCACCCAATTTCCTCTTTGGTTAAGACAAAATCATCCACTGTTGAGAATGCAATACAGGAAATGGAAGAAAAAGTTGACAAGGGAACTGTTGATACCAGCAACAAGAAGGCAGTGGATGATTTTGCTACTGAATCAATTAGACATGCTGATGATGTACTTGTAGATGGTCAGTTGAAGAGGCAATTGGACCTGCCAGTTGATCTGTCTTCTAAAGTAGACCTTGAAAATGGGGGAAAGCCAAAAAGAAAAAGGAAAGAACGGCTGCAGGAGGAGAAAACAGTTGAAGCTGATGTCCTTAATAAAGAGGATGAAGCCCAGAAAAATGAGGCAAAAGCTGAAAATAGGAACCAGAATGGACAACTGATGGCAGTAAACCATAGCAGCGGAGCTGAAATGCCAGATAACTTATCTTTGCCTTCCGCGGAGGTTGGCCTTGGAAACAGTGATAAACCAAAGAAGAAAAGGAAGAAGCGGGTGGAGGAGAAAACAGCTGAGGTTATCTGTACTAACCCTGGTAATGATATAAAAGAGGATGAGGCAAAGGGTGACTTCTGCTTGGATCCACCACTCAAAAGTGAACAAAATCAGAAGTCAGCCAAGGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

399

Amino Acids

44.35

Weight (kDa)

4.86

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	3 - 94	1.7e-23	Nucleoplasmin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12340 AT3G12340 AT3G12340
fragaria_vesca	FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890
malus_domestica	MD00G1063900.v1.1
prunus_persica	Prupe.2G145400_v2.0.a1
pyrus_communis	pycom16g26260
rosa_chinensis	RchiOBHm_Chr1g0350561
rosa_laevigata	RLG00000028473
rosa_multiflora	Rmu_co8266255.1_g000001 Rmu_sc0009041.1_g000004
rosa_roxburghii	Rroxscaffold_4G00304730
rosa_rugosa	Rorug01G0212200
rosa_samantha	Rh1AG226700 Rh1BG195400 Rh1CG211500 Rh1DG223400
rosa_wichuraiana	Rw1G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	789
AccI	GTMKAC	1 cut(s)	807
AccII	CGCG	1 cut(s)	1013
AciI	CCGC	4 cut(s)	975, 1011, 1013, 1063
AclWI	GGATC	2 cut(s)	1145, 1158
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	3 cut(s)	542, 747, 1096
AfiI	CCNNNNNNNGG	2 cut(s)	69, 506
AgsI	TTSAA	7 cut(s)	20, 84, 419, 566, 766, 815, 875
AjnI	CCWGG	1 cut(s)	1102
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AluBI	AGCT	4 cut(s)	878, 926, 980, 1082
AluI	AGCT	4 cut(s)	878, 926, 980, 1082
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	2 cut(s)	1145, 1158
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	2 cut(s)	296, 1021
ApeKI	GCWGC	4 cut(s)	107, 517, 853, 972
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	251, 778
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	3 cut(s)	584, 590, 1148
AvaII	GGWCC	2 cut(s)	251, 778
BamHI	GGATCC	1 cut(s)	1150
BbsI	GAAGAC	3 cut(s)	381, 415, 789
BbvCI	CCTCAGC	1 cut(s)	1083
BbvI	GCAGC	4 cut(s)	94, 529, 840, 984
BccI	CCATC	3 cut(s)	436, 749, 949
BceAI	ACGGC	2 cut(s)	86, 866
BciT130I	CCWGG	1 cut(s)	1104
BciVI	GTATCC	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	2 cut(s)	450, 854
BfuAI	ACCTGC	1 cut(s)	789
BfuI	GTATCC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	4 cut(s)	108, 518, 854, 973
BlsI	GCNGC	4 cut(s)	109, 519, 855, 974
Bme1390I	CCNGG	2 cut(s)	30, 1104
Bme18I	GGWCC	2 cut(s)	251, 778
BmgT120I	GGNCC	2 cut(s)	251, 778
BmiI	GGNNCC	2 cut(s)	938, 1152
BmrFI	CCNGG	2 cut(s)	30, 1104
BmsI	GCATC	2 cut(s)	436, 449
BpiI	GAAGAC	3 cut(s)	381, 415, 789
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	1083
BpuMI	CCSGG	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	5 cut(s)	254, 1011, 1024, 1102, 1188
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 506
Bse1I	ACTGG	2 cut(s)	130, 785
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	1104
BseDI	CCNNGG	5 cut(s)	254, 1011, 1024, 1102, 1188
BseGI	GGATG	5 cut(s)	623, 712, 904, 1129, 1198
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	69, 506
BseMII	CTCAG	5 cut(s)	171, 255, 360, 515, 1074
BseNI	ACTGG	2 cut(s)	130, 785
BseRI	GAGGAG	3 cut(s)	491, 875, 1085
BseXI	GCAGC	4 cut(s)	94, 529, 840, 984
BsgI	GTGCAG	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	1013
BshFI	GGCC	2 cut(s)	298, 1023
BsiSI	CCGG	2 cut(s)	30, 155
BsiWI	CGTACG	1 cut(s)	540
BslI	CCNNNNNNNGG	2 cut(s)	69, 506
BsmAI	GTCTC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	298, 1023
Bsp143I	GATC	5 cut(s)	186, 359, 412, 790, 1150
BspACI	CCGC	4 cut(s)	975, 1011, 1013, 1063
BspANI	GGCC	2 cut(s)	298, 1023
BspCNI	CTCAG	5 cut(s)	172, 254, 359, 514, 1075
BspFNI	CGCG	1 cut(s)	1013
BspLI	GGNNCC	2 cut(s)	938, 1152
BspMAI	CTGCAG	1 cut(s)	858
BspMI	ACCTGC	1 cut(s)	789
BspPI	GGATC	2 cut(s)	1145, 1158
BsrI	ACTGG	2 cut(s)	130, 785
BssECI	CCNNGG	5 cut(s)	254, 1011, 1024, 1102, 1188
BssMI	GATC	5 cut(s)	186, 359, 412, 790, 1150
BssT1I	CCWWGG	2 cut(s)	1024, 1188
Bst2UI	CCWGG	1 cut(s)	1104
Bst4CI	ACNGT	6 cut(s)	371, 395, 631, 679, 871, 1034
Bst6I	CTCTTC	2 cut(s)	468, 761
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBAI	YACGTR	1 cut(s)	544
BstDEI	CTNAG	7 cut(s)	180, 241, 346, 489, 501, 530, 1083
BstDSI	CCRYGG	1 cut(s)	1011
BstENI	CCTNNNNNAGG	1 cut(s)	504
BstF5I	GGATG	5 cut(s)	623, 712, 904, 1129, 1198
BstFNI	CGCG	1 cut(s)	1013
BstKTI	GATC	5 cut(s)	189, 362, 415, 793, 1153
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	5 cut(s)	186, 359, 412, 790, 1150
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	1104
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	2 cut(s)	28, 1102
BstSFI	CTRYAG	2 cut(s)	450, 854
BstSNI	TACGTA	1 cut(s)	544
BstUI	CGCG	1 cut(s)	1013
BstV1I	GCAGC	4 cut(s)	94, 529, 840, 984
BstV2I	GAAGAC	3 cut(s)	381, 415, 789
BstX2I	RGATCY	2 cut(s)	359, 1150
BstYI	RGATCY	2 cut(s)	359, 1150
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	298, 1023
BtgI	CCRYGG	1 cut(s)	1011
BtsCI	GGATG	5 cut(s)	623, 712, 904, 1129, 1198
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	5 cut(s)	137, 376, 627, 708, 1039
BveI	ACCTGC	1 cut(s)	789
CaiI	CAGNNNCTG	1 cut(s)	458
Cfr13I	GGNCC	2 cut(s)	251, 778
Cfr42I	CCGCGG	1 cut(s)	1014
Csp6I	GTAC	3 cut(s)	541, 746, 1095
CviAII	CATG	2 cut(s)	235, 734
CviQI	GTAC	3 cut(s)	541, 746, 1095
DdeI	CTNAG	7 cut(s)	180, 241, 346, 489, 501, 530, 1083
DpnI	GATC	5 cut(s)	188, 361, 414, 792, 1152
DpnII	GATC	5 cut(s)	186, 359, 412, 790, 1150
Eam1104I	CTCTTC	2 cut(s)	468, 761
EarI	CTCTTC	2 cut(s)	468, 761
Eco105I	TACGTA	1 cut(s)	544
Eco130I	CCWWGG	2 cut(s)	1024, 1188
Eco47I	GGWCC	2 cut(s)	251, 778
Eco57I	CTGAAG	1 cut(s)	492
EcoNI	CCTNNNNNAGG	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	1102
EcoT14I	CCWWGG	2 cut(s)	1024, 1188
ErhI	CCWWGG	2 cut(s)	1024, 1188
FaeI	CATG	2 cut(s)	238, 737
FaiI	YATR	8 cut(s)	48, 125, 166, 236, 387, 735, 969, 1115
FalI	AAGNNNNNCTT	4 cut(s)	795, 827, 1124, 1156
FatI	CATG	2 cut(s)	234, 733
FauI	CCCGC	1 cut(s)	1056
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	4 cut(s)	108, 518, 854, 973
FokI	GGATG	4 cut(s)	610, 719, 911, 1136
Fsp4HI	GCNGC	4 cut(s)	108, 518, 854, 973
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	4 cut(s)	108, 518, 854, 973
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	298, 1023
HapII	CCGG	2 cut(s)	30, 155
Hin1II	CATG	2 cut(s)	238, 737
HincII	GTYRAC	2 cut(s)	367, 667
HindII	GTYRAC	2 cut(s)	367, 667
HinfI	GANTC	9 cut(s)	59, 151, 314, 320, 344, 455, 461, 554, 722
HpaI	GTTAAC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	30, 155
HphI	GGTGA	3 cut(s)	584, 590, 1148
Hpy166II	GTNNAC	5 cut(s)	367, 667, 808, 964, 1169
Hpy188I	TCNGA	9 cut(s)	258, 319, 349, 445, 460, 472, 504, 559, 1179
Hpy188III	TCNNGA	3 cut(s)	179, 308, 416
Hpy8I	GTNNAC	5 cut(s)	367, 667, 808, 964, 1169
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	3 cut(s)	505, 691, 1017
HpyCH4III	ACNGT	6 cut(s)	371, 395, 631, 679, 871, 1034
HpyCH4IV	ACGT	2 cut(s)	539, 543
HpyCH4V	TGCA	6 cut(s)	110, 199, 440, 517, 641, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	7 cut(s)	180, 241, 346, 489, 501, 530, 1083
HpySE526I	ACGT	2 cut(s)	539, 543
Hsp92II	CATG	2 cut(s)	238, 737
KspAI	GTTAAC	1 cut(s)	367
KspI	CCGCGG	1 cut(s)	1014
Kzo9I	GATC	5 cut(s)	186, 359, 412, 790, 1150
LmnI	GCTCC	1 cut(s)	977
Lsp1109I	GCAGC	4 cut(s)	94, 529, 840, 984
LweI	GCATC	2 cut(s)	436, 449
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	539, 543
MaeIII	GTNAC	2 cut(s)	275, 1136
MalI	GATC	5 cut(s)	188, 361, 414, 792, 1152
MboI	GATC	5 cut(s)	186, 359, 412, 790, 1150
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	2 cut(s)	359, 1150
MluCI	AATT	5 cut(s)	15, 212, 597, 726, 773
MlyI	GAGTC	4 cut(s)	53, 160, 323, 338
MseI	TTAA	3 cut(s)	366, 612, 888
MslI	CAYNNNNRTG	2 cut(s)	83, 738
MspA1I	CMGCKG	3 cut(s)	975, 1013, 1082
MspI	CCGG	2 cut(s)	30, 155
MspR9I	CCNGG	2 cut(s)	30, 1104
MunI	CAATTG	1 cut(s)	773
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	1104
MvnI	CGCG	1 cut(s)	1013
MwoI	GCNNNNNNNGC	1 cut(s)	446
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	5 cut(s)	186, 359, 412, 790, 1150
NlaIII	CATG	2 cut(s)	238, 737
NlaIV	GGNNCC	2 cut(s)	938, 1152
NmuCI	GTSAC	1 cut(s)	1136
NspI	RCATGY	1 cut(s)	737
PctI	GAATGC	1 cut(s)	643
PfeI	GAWTC	5 cut(s)	320, 455, 461, 554, 722
Pfl23II	CGTACG	1 cut(s)	540
PkrI	GCNGC	4 cut(s)	109, 519, 855, 974
PleI	GAGTC	4 cut(s)	53, 159, 322, 338
PpsI	GAGTC	4 cut(s)	53, 159, 322, 338
Ppu21I	YACGTR	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	1102
PspGI	CCWGG	1 cut(s)	1102
PspLI	CGTACG	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	938, 1152
PspPI	GGNCC	2 cut(s)	251, 778
PsrI	GAACNNNNNNTAC	2 cut(s)	667, 699
PstI	CTGCAG	1 cut(s)	858
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	359, 1150
PvuII	CAGCTG	1 cut(s)	1082
RsaI	GTAC	3 cut(s)	542, 747, 1096
RsaNI	GTAC	3 cut(s)	541, 746, 1095
RseI	CAYNNNNRTG	2 cut(s)	83, 738
SacII	CCGCGG	1 cut(s)	1014
SaqAI	TTAA	3 cut(s)	366, 612, 888
SatI	GCNGC	4 cut(s)	108, 518, 854, 973
Sau3AI	GATC	5 cut(s)	186, 359, 412, 790, 1150
Sau96I	GGNCC	2 cut(s)	251, 778
SchI	GAGTC	4 cut(s)	53, 160, 323, 338
ScrFI	CCNGG	2 cut(s)	30, 1104
SfaNI	GCATC	2 cut(s)	436, 449
SfcI	CTRYAG	2 cut(s)	450, 854
Sfr303I	CCGCGG	1 cut(s)	1014
SgrBI	CCGCGG	1 cut(s)	1014
SinI	GGWCC	2 cut(s)	251, 778
SmiMI	CAYNNNNRTG	2 cut(s)	83, 738
SnaBI	TACGTA	1 cut(s)	544
Sse9I	AATT	5 cut(s)	15, 212, 597, 726, 773
SsiI	CCGC	4 cut(s)	975, 1011, 1013, 1063
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	28, 1102
StyI	CCWWGG	2 cut(s)	1024, 1188
TaaI	ACNGT	6 cut(s)	371, 395, 631, 679, 871, 1034
TaiI	ACGT	2 cut(s)	542, 546
TaqI	TCGA	1 cut(s)	189
TasI	AATT	5 cut(s)	15, 212, 597, 726, 773
TatI	WGTACW	2 cut(s)	745, 1094
TfiI	GAWTC	5 cut(s)	320, 455, 461, 554, 722
Tru1I	TTAA	3 cut(s)	366, 612, 888
Tru9I	TTAA	3 cut(s)	366, 612, 888
TscAI	CASTG	5 cut(s)	137, 376, 634, 708, 1039
TseFI	GTSAC	1 cut(s)	1136
TseI	GCWGC	4 cut(s)	107, 517, 853, 972
Tsp45I	GTSAC	1 cut(s)	1136
TspDTI	ATGAA	3 cut(s)	243, 254, 915
TspRI	CASTG	5 cut(s)	137, 376, 634, 708, 1039
VpaK11BI	GGWCC	2 cut(s)	251, 778
XagI	CCTNNNNNAGG	1 cut(s)	504
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	807
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.