Rw1G019590

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
42714157 .. 42718303
4147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019590.1

Sequence Viewer

Length: 1749 bp
ATGGCTTTCTGGGGAATTGAAGTGAAACCCGGAAAGCCTTTTACTCATAAACCTGATGACTCCAATGGACGGCTTCACATTTCAATGGCAACATTGGGGTTGGGGGCTGCAACCAAAAGAAGCATACTTCAGTGTAATGTAGGAAACAAGAGTCCGGTTTATCTATGCGCGTTGTATCCTGAGAAGATCGAGTGTTTGCAACTACATTTGGAATTTGACGAGGCTGATGAAGTCATGTTCTCAGTTCTTGGTCCTCGGAGTGTTCACCTGGCTGGTTACTATCTAGGTGGTCGTCGGCCTTACAATCCAGATGAGTCAGAATCCTTTGGAGAAGATATTGCTGACTCAGAGACACAGAGATCTGTTAACAGTGAAGACGAAAAGTATGATGACAGTTTTATTGATGATGATGATGATCTTGAAGTCTTCCCATCTACTCCTGCATCTGATGCTACAGAGGAGTTTTTGGCTAAGAAGAAACCTCAGAAAGAGAAGACGCGGCACAGACAACTTAGAAAGACGTACGTAATAAGTGATTCAGAAGTTGAAAGTGAAAATGGGGATGACGACAGTCACCCAATTTCCTCTTTGGTTAAGACAAAATCATCCACTGTTGAGAATGCAATACAGGAAGTGGAAGAAAAAGTTGACAAGGGAACTGTTGATACCAGCAACAAGAAGGCAGTGGATGATTTTGCTACTGAATCAATTAGACATGCTGATGATGTACTTGTAGATGGTCAGTTGAAGAGGTATTTCTCCTGCTTAACTGATAAACAAGGGAATGCAATTGGACCAGCCATTGATCTGTCTTCTAAAGTAGACCTTGAAAATGGGGGAAAGTCAAAAAGAAAAAGGAAAGAACGGCTGCAGGAGGAGAAAACAGTTGAAGCTGATGTCCTTAATAAAGAGGATGAAGCCCAGAAAAACGAGGCAAAGGCTGAAAATAGAAACCAGAATGGACAACTGATGCCAGTAAACCATAGCAGTGGAGCTGAAATGCCGGATAACTTATCTTTGCTTTCCGCGGAGGTTGGCCTTGGAAACAGTGATAAACCAAAGAAGAAAAGGAAGAAGCGGGTGGAGGAGAAAACAGCTGAGGTTATCTGTACTAACCCTGGTAATGATATAAAAGAGGATGAGGCAAAGGGTGACTTCTGCTTGGATCCACCACTCAAAAGTGAACAAAATCAGAAGTCAGCCAAGGATGAGAGTTTTGGCCATGACTCCCATAAACTTGTTGATGAACCTGATGAAAAGAAAGTCAAAAAGAAGAAGAAGAAAAGCAAAACCCAATCACATGTAGAAACCGTGAACACAGATATAGCTCTCTTGTCAGTAGAAGAGAAGGTCACATCTCCCGTGGAGAATGAGGCCAATTATGTCGATGCTAAATCATCTGAAGTTAGAACTGTCCCCAGTGGATTACACATTGAGGAGTTAGAAGCAGGAGAACCCAATGGCAAAGTTGCAACCTCTGGGAAAAAGATCACTGTTCATTATGTTGGCAAGTTGAAAAAGAATGGAGAAGTAGTTGACTCATGTGATGGTGGTCCTCCTTCTAAGTTCCGCTTAGGTCAGGGAAAAGTTATTGAGGGTTTGGATGCTGGTATTGATGGTATGCGAGTTGGTGGCAAACGAAGACTTGTTATCCCACCTTCAATGGCTTATGGGAGCAAAGGATATGATAAAGATATACCACCAGACTCATGGCTGGTATACGATGTTGAGTTGGTGAAAGTTCACTGA

Protein Analysis

582

Amino Acids

64.25

Weight (kDa)

5.32

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 94 3.2e-23 Nucleoplasmin-like domain
FKBP_C PF00254 491 - 579 3.8e-29 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 822, 1719
AccII CGCG 3 cut(s) 170, 499, 1028
AciI CCGC 5 cut(s) 499, 1026, 1028, 1078, 1570
AclWI GGATC 2 cut(s) 1160, 1173
AcoI YGGCCR 1 cut(s) 1219
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 2 cut(s) 113, 1422
AfaI GTAC 3 cut(s) 524, 729, 1111
AfiI CCNNNNNNNGG 1 cut(s) 69
AflIII ACRYGT 1 cut(s) 1300
AgsI TTSAA 9 cut(s) 20, 84, 422, 548, 748, 830, 890, 1516, 1662
AjnI CCWGG 2 cut(s) 267, 1117
AluBI AGCT 4 cut(s) 893, 995, 1097, 1328
AluI AGCT 4 cut(s) 893, 995, 1097, 1328
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 2 cut(s) 1160, 1173
AoxI GGCC 4 cut(s) 296, 1036, 1219, 1374
ApeKI GCWGC 2 cut(s) 107, 868
ApoI RAATTY 1 cut(s) 212
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 3 cut(s) 251, 794, 1553
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 4 cut(s) 257, 566, 1163, 1747
AvaII GGWCC 3 cut(s) 251, 794, 1553
BalI TGGCCA 1 cut(s) 1221
BamHI GGATCC 1 cut(s) 1165
BbsI GAAGAC 5 cut(s) 381, 418, 500, 804, 1648
BbvCI CCTCAGC 1 cut(s) 1098
BbvI GCAGC 2 cut(s) 94, 855
BccI CCATC 4 cut(s) 439, 731, 1541, 1610
BceAI ACGGC 2 cut(s) 86, 881
BciT130I CCWGG 2 cut(s) 269, 1119
BciVI GTATCC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 2 cut(s) 453, 869
BfuI GTATCC 1 cut(s) 186
BglII AGATCT 1 cut(s) 359
BisI GCNGC 3 cut(s) 108, 500, 869
BlsI GCNGC 3 cut(s) 109, 501, 870
Bme1390I CCNGG 3 cut(s) 30, 269, 1119
Bme18I GGWCC 3 cut(s) 251, 794, 1553
BmgT120I GGNCC 3 cut(s) 251, 794, 1553
BmiI GGNNCC 1 cut(s) 1167
BmrFI CCNGG 3 cut(s) 30, 269, 1119
BmrI ACTGGG 1 cut(s) 1413
BmsI GCATC 5 cut(s) 439, 452, 960, 1378, 1594
BmuI ACTGGG 1 cut(s) 1413
BoxI GACNNNNGTC 1 cut(s) 570
BpiI GAAGAC 5 cut(s) 381, 418, 500, 804, 1648
Bpu10I CCTNAGC 2 cut(s) 1098, 1573
BpuMI CCSGG 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 6 cut(s) 254, 1026, 1039, 1117, 1203, 1362
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 1518, 1548
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 974, 1419
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 2 cut(s) 269, 1119
BseDI CCNNGG 6 cut(s) 254, 1026, 1039, 1117, 1203, 1362
BseGI GGATG 7 cut(s) 568, 605, 694, 919, 1144, 1213, 1609
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 5 cut(s) 171, 255, 360, 497, 1089
BseNI ACTGG 2 cut(s) 974, 1419
BseRI GAGGAG 4 cut(s) 473, 890, 1100, 1451
BseXI GCAGC 2 cut(s) 94, 855
Bsh1236I CGCG 3 cut(s) 170, 499, 1028
BshFI GGCC 4 cut(s) 298, 1038, 1221, 1376
BsiSI CCGG 3 cut(s) 30, 155, 1004
BsiWI CGTACG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 1400
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 1400
BsmI GAATGC 2 cut(s) 625, 790
BsnI GGCC 4 cut(s) 298, 1038, 1221, 1376
Bsp143I GATC 6 cut(s) 186, 359, 415, 805, 1165, 1488
BspACI CCGC 5 cut(s) 499, 1026, 1028, 1078, 1570
BspANI GGCC 4 cut(s) 298, 1038, 1221, 1376
BspCNI CTCAG 5 cut(s) 172, 254, 359, 496, 1090
BspFNI CGCG 3 cut(s) 170, 499, 1028
BspLI GGNNCC 1 cut(s) 1167
BspMAI CTGCAG 1 cut(s) 873
BspPI GGATC 2 cut(s) 1160, 1173
BsrI ACTGG 2 cut(s) 974, 1419
BssECI CCNNGG 6 cut(s) 254, 1026, 1039, 1117, 1203, 1362
BssMI GATC 6 cut(s) 186, 359, 415, 805, 1165, 1488
BssNAI GTATAC 1 cut(s) 1720
BssT1I CCWWGG 2 cut(s) 1039, 1203
Bst1107I GTATAC 1 cut(s) 1720
Bst2UI CCWGG 2 cut(s) 269, 1119
Bst6I CTCTTC 2 cut(s) 743, 1338
BstAPI GCANNNNNTGC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 526
BstDEI CTNAG 9 cut(s) 180, 241, 346, 471, 483, 512, 1098, 1563, 1573
BstDSI CCRYGG 2 cut(s) 1026, 1362
BstF5I GGATG 7 cut(s) 568, 605, 694, 919, 1144, 1213, 1609
BstFNI CGCG 3 cut(s) 170, 499, 1028
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 6 cut(s) 189, 362, 418, 808, 1168, 1491
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 6 cut(s) 186, 359, 415, 805, 1165, 1488
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 2 cut(s) 269, 1119
BstNSI RCATGY 2 cut(s) 719, 1304
BstPAI GACNNNNGTC 1 cut(s) 570
BstSCI CCNGG 3 cut(s) 28, 267, 1117
BstSFI CTRYAG 2 cut(s) 453, 869
BstSNI TACGTA 1 cut(s) 526
BstUI CGCG 3 cut(s) 170, 499, 1028
BstV1I GCAGC 2 cut(s) 94, 855
BstV2I GAAGAC 5 cut(s) 381, 418, 500, 804, 1648
BstX2I RGATCY 2 cut(s) 359, 1165
BstXI CCANNNNNNTGG 2 cut(s) 989, 1710
BstYI RGATCY 2 cut(s) 359, 1165
BstZ17I GTATAC 1 cut(s) 1720
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 4 cut(s) 298, 1038, 1221, 1376
BtgI CCRYGG 2 cut(s) 1026, 1362
BtsCI GGATG 7 cut(s) 568, 605, 694, 919, 1144, 1213, 1609
BtsI GCAGTG 2 cut(s) 690, 994
BtsIMutI CAGTG 9 cut(s) 137, 376, 609, 690, 994, 1054, 1426, 1491, 1744
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 251, 794, 1553
Cfr42I CCGCGG 1 cut(s) 1029
CseI GACGC 1 cut(s) 505
Csp6I GTAC 3 cut(s) 523, 728, 1110
CviAII CATG 6 cut(s) 235, 716, 1223, 1301, 1542, 1710
CviQI GTAC 3 cut(s) 523, 728, 1110
DdeI CTNAG 9 cut(s) 180, 241, 346, 471, 483, 512, 1098, 1563, 1573
DpnI GATC 6 cut(s) 188, 361, 417, 807, 1167, 1490
DpnII GATC 6 cut(s) 186, 359, 415, 805, 1165, 1488
EaeI YGGCCR 1 cut(s) 1219
Eam1104I CTCTTC 2 cut(s) 743, 1338
EarI CTCTTC 2 cut(s) 743, 1338
Eco105I TACGTA 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 1039, 1203
Eco47I GGWCC 3 cut(s) 251, 794, 1553
Eco57I CTGAAG 2 cut(s) 113, 1422
EcoRII CCWGG 2 cut(s) 267, 1117
EcoT14I CCWWGG 2 cut(s) 1039, 1203
ErhI CCWWGG 2 cut(s) 1039, 1203
FaeI CATG 6 cut(s) 238, 719, 1226, 1304, 1545, 1713
FalI AAGNNNNNCTT 6 cut(s) 810, 842, 1139, 1171, 1556, 1588
FaqI GGGAC 1 cut(s) 1400
FatI CATG 6 cut(s) 234, 715, 1222, 1300, 1541, 1709
FauI CCCGC 1 cut(s) 1071
FblI GTMKAC 2 cut(s) 822, 1719
Fnu4HI GCNGC 3 cut(s) 108, 500, 869
FokI GGATG 7 cut(s) 575, 592, 701, 926, 1151, 1220, 1616
Fsp4HI GCNGC 3 cut(s) 108, 500, 869
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 108, 500, 869
HaeIII GGCC 4 cut(s) 298, 1038, 1221, 1376
HapII CCGG 3 cut(s) 30, 155, 1004
HgaI GACGC 1 cut(s) 505
HhaI GCGC 1 cut(s) 170
Hin1II CATG 6 cut(s) 238, 719, 1226, 1304, 1545, 1713
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 3 cut(s) 367, 649, 1537
HindII GTYRAC 3 cut(s) 367, 649, 1537
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 3 cut(s) 30, 155, 1004
HphI GGTGA 4 cut(s) 257, 566, 1163, 1747
Hpy188I TCNGA 8 cut(s) 258, 319, 349, 448, 486, 541, 1194, 1402
Hpy188III TCNNGA 3 cut(s) 179, 308, 419
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 4 cut(s) 673, 1342, 1569, 1668
HpyCH4IV ACGT 2 cut(s) 521, 525
HpyCH4V TGCA 7 cut(s) 110, 199, 443, 623, 788, 871, 1472
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 9 cut(s) 180, 241, 346, 471, 483, 512, 1098, 1563, 1573
HpySE526I ACGT 2 cut(s) 521, 525
Hsp92II CATG 6 cut(s) 238, 719, 1226, 1304, 1545, 1713
HspAI GCGC 1 cut(s) 168
KspAI GTTAAC 1 cut(s) 367
KspI CCGCGG 1 cut(s) 1029
Kzo9I GATC 6 cut(s) 186, 359, 415, 805, 1165, 1488
LmnI GCTCC 2 cut(s) 992, 1674
Lsp1109I GCAGC 2 cut(s) 94, 855
LweI GCATC 5 cut(s) 439, 452, 960, 1378, 1594
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 521, 525
MaeIII GTNAC 4 cut(s) 275, 572, 1151, 1351
MalI GATC 6 cut(s) 188, 361, 417, 807, 1167, 1490
MboI GATC 6 cut(s) 186, 359, 415, 805, 1165, 1488
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 2 cut(s) 359, 1165
MlsI TGGCCA 1 cut(s) 1221
MluCI AATT 6 cut(s) 15, 212, 579, 708, 789, 1378
MluNI TGGCCA 1 cut(s) 1221
MlyI GAGTC 7 cut(s) 53, 160, 323, 338, 1220, 1532, 1700
Mox20I TGGCCA 1 cut(s) 1221
MscI TGGCCA 1 cut(s) 1221
MseI TTAA 4 cut(s) 366, 594, 767, 903
MslI CAYNNNNRTG 3 cut(s) 83, 720, 987
Msp20I TGGCCA 1 cut(s) 1221
MspA1I CMGCKG 2 cut(s) 1028, 1097
MspI CCGG 3 cut(s) 30, 155, 1004
MspR9I CCNGG 3 cut(s) 30, 269, 1119
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 2 cut(s) 625, 790
MvaI CCWGG 2 cut(s) 269, 1119
MvnI CGCG 3 cut(s) 170, 499, 1028
MwoI GCNNNNNNNGC 1 cut(s) 449
NciI CCSGG 1 cut(s) 30
NdeII GATC 6 cut(s) 186, 359, 415, 805, 1165, 1488
NlaIII CATG 6 cut(s) 238, 719, 1226, 1304, 1545, 1713
NlaIV GGNNCC 1 cut(s) 1167
NmuCI GTSAC 3 cut(s) 572, 1151, 1351
NspI RCATGY 2 cut(s) 719, 1304
PciI ACATGT 1 cut(s) 1300
PctI GAATGC 2 cut(s) 625, 790
PfeI GAWTC 3 cut(s) 320, 536, 704
Pfl23II CGTACG 1 cut(s) 522
PkrI GCNGC 3 cut(s) 109, 501, 870
PleI GAGTC 7 cut(s) 53, 159, 322, 338, 1220, 1532, 1700
PpsI GAGTC 7 cut(s) 53, 159, 322, 338, 1220, 1532, 1700
Ppu21I YACGTR 1 cut(s) 526
PscI ACATGT 1 cut(s) 1300
PshAI GACNNNNGTC 1 cut(s) 570
Psp6I CCWGG 2 cut(s) 267, 1117
PspGI CCWGG 2 cut(s) 267, 1117
PspLI CGTACG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 1167
PspPI GGNCC 3 cut(s) 251, 794, 1553
PsrI GAACNNNNNNTAC 2 cut(s) 649, 681
PstI CTGCAG 1 cut(s) 873
PsuI RGATCY 2 cut(s) 359, 1165
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 3 cut(s) 524, 729, 1111
RsaNI GTAC 3 cut(s) 523, 728, 1110
RseI CAYNNNNRTG 3 cut(s) 83, 720, 987
SacII CCGCGG 1 cut(s) 1029
SaqAI TTAA 4 cut(s) 366, 594, 767, 903
SatI GCNGC 3 cut(s) 108, 500, 869
Sau3AI GATC 6 cut(s) 186, 359, 415, 805, 1165, 1488
Sau96I GGNCC 3 cut(s) 251, 794, 1553
SchI GAGTC 7 cut(s) 53, 160, 323, 338, 1220, 1532, 1700
ScrFI CCNGG 3 cut(s) 30, 269, 1119
SfaNI GCATC 5 cut(s) 439, 452, 960, 1378, 1594
SfcI CTRYAG 2 cut(s) 453, 869
Sfr303I CCGCGG 1 cut(s) 1029
SgrBI CCGCGG 1 cut(s) 1029
SinI GGWCC 3 cut(s) 251, 794, 1553
SmiMI CAYNNNNRTG 3 cut(s) 83, 720, 987
SnaBI TACGTA 1 cut(s) 526
Sse9I AATT 6 cut(s) 15, 212, 579, 708, 789, 1378
SsiI CCGC 5 cut(s) 499, 1026, 1028, 1078, 1570
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 28, 267, 1117
StyI CCWWGG 2 cut(s) 1039, 1203
TaiI ACGT 2 cut(s) 524, 528
TaqI TCGA 2 cut(s) 189, 1386
TasI AATT 6 cut(s) 15, 212, 579, 708, 789, 1378
TatI WGTACW 2 cut(s) 727, 1109
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 3 cut(s) 320, 536, 704
Tru1I TTAA 4 cut(s) 366, 594, 767, 903
Tru9I TTAA 4 cut(s) 366, 594, 767, 903
TscAI CASTG 8 cut(s) 137, 376, 616, 690, 994, 1054, 1426, 1498
TseFI GTSAC 3 cut(s) 572, 1151, 1351
TseI GCWGC 2 cut(s) 107, 868
Tsp45I GTSAC 3 cut(s) 572, 1151, 1351
TspDTI ATGAA 5 cut(s) 243, 930, 1260, 1269, 1487
TspRI CASTG 8 cut(s) 137, 376, 616, 690, 994, 1054, 1426, 1498
VpaK11BI GGWCC 3 cut(s) 251, 794, 1553
XapI RAATTY 1 cut(s) 212
XceI RCATGY 2 cut(s) 719, 1304
XcmI CCANNNNNNNNNTGG 1 cut(s) 1707
XmiI GTMKAC 2 cut(s) 822, 1719
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.