Peptidyl-prolyl cis-trans isomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G12340 AT3G12340 AT3G12340 |
| fragaria_vesca | FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 |
| malus_domestica | MD00G1063900.v1.1 |
| prunus_persica | Prupe.2G145400_v2.0.a1 |
| pyrus_communis | pycom16g26260 |
| rosa_chinensis | RchiOBHm_Chr1g0350561 |
| rosa_laevigata | RLG00000028473 |
| rosa_multiflora | Rmu_co8266255.1_g000001 Rmu_sc0009041.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00304730 |
| rosa_rugosa | Rorug01G0212200 |
| rosa_samantha | Rh1AG226700 Rh1BG195400 Rh1CG211500 Rh1DG223400 |
| rosa_wichuraiana | Rw1G019590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 807, 1704 |
| AccII | CGCG | 2 cut(s) | 170, 1010 |
| AciI | CCGC | 5 cut(s) | 517, 1008, 1010, 1060, 1555 |
| AclWI | GGATC | 2 cut(s) | 1142, 1155 |
| AcoI | YGGCCR | 1 cut(s) | 1201 |
| AcsI | RAATTY | 2 cut(s) | 212, 454 |
| AcuI | CTGAAG | 2 cut(s) | 492, 1407 |
| AfaI | GTAC | 3 cut(s) | 542, 747, 1093 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 69, 506 |
| AgsI | TTSAA | 9 cut(s) | 20, 84, 419, 566, 766, 815, 875, 1501, 1647 |
| AjnI | CCWGG | 1 cut(s) | 1099 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 758, 790 |
| AluBI | AGCT | 5 cut(s) | 107, 878, 977, 1079, 1313 |
| AluI | AGCT | 5 cut(s) | 107, 878, 977, 1079, 1313 |
| Alw26I | GTCTC | 1 cut(s) | 344 |
| AlwI | GGATC | 2 cut(s) | 1142, 1155 |
| AoxI | GGCC | 5 cut(s) | 296, 1018, 1201, 1335, 1359 |
| ApeKI | GCWGC | 2 cut(s) | 107, 853 |
| ApoI | RAATTY | 2 cut(s) | 212, 454 |
| AspLEI | GCGC | 1 cut(s) | 170 |
| AspS9I | GGNCC | 3 cut(s) | 251, 778, 1538 |
| AsuC2I | CCSGG | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 4 cut(s) | 422, 584, 1145, 1732 |
| AvaII | GGWCC | 3 cut(s) | 251, 778, 1538 |
| BalI | TGGCCA | 1 cut(s) | 1203 |
| BamHI | GGATCC | 1 cut(s) | 1147 |
| BauI | CACGAG | 1 cut(s) | 1525 |
| BbsI | GAAGAC | 2 cut(s) | 789, 1633 |
| BbvCI | CCTCAGC | 1 cut(s) | 1080 |
| BbvI | GCAGC | 2 cut(s) | 94, 840 |
| BccI | CCATC | 5 cut(s) | 401, 436, 749, 1526, 1595 |
| BceAI | ACGGC | 2 cut(s) | 86, 866 |
| BciT130I | CCWGG | 1 cut(s) | 1101 |
| BciVI | GTATCC | 1 cut(s) | 186 |
| BcnI | CCSGG | 1 cut(s) | 30 |
| BcoDI | GTCTC | 1 cut(s) | 344 |
| BfaI | CTAG | 1 cut(s) | 284 |
| BfmI | CTRYAG | 1 cut(s) | 854 |
| BfuI | GTATCC | 1 cut(s) | 186 |
| BglII | AGATCT | 1 cut(s) | 359 |
| BisI | GCNGC | 3 cut(s) | 108, 518, 854 |
| BlsI | GCNGC | 3 cut(s) | 109, 519, 855 |
| Bme1390I | CCNGG | 2 cut(s) | 30, 1101 |
| Bme18I | GGWCC | 3 cut(s) | 251, 778, 1538 |
| BmgT120I | GGNCC | 3 cut(s) | 251, 778, 1538 |
| BmiI | GGNNCC | 1 cut(s) | 1149 |
| BmrFI | CCNGG | 2 cut(s) | 30, 1101 |
| BmrI | ACTGGG | 1 cut(s) | 1398 |
| BmsI | GCATC | 5 cut(s) | 436, 449, 945, 1363, 1579 |
| BmuI | ACTGGG | 1 cut(s) | 1398 |
| BpiI | GAAGAC | 2 cut(s) | 789, 1633 |
| BpmI | CTGGAG | 1 cut(s) | 113 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1080, 1558 |
| BpuMI | CCSGG | 1 cut(s) | 30 |
| BsaAI | YACGTR | 1 cut(s) | 544 |
| BsaBI | GATNNNNATC | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 6 cut(s) | 254, 1008, 1021, 1099, 1185, 1347 |
| BsaWI | WCCGGW | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1281, 1311, 1503, 1533 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 69, 506 |
| Bse1I | ACTGG | 4 cut(s) | 130, 785, 959, 1404 |
| Bse8I | GATNNNNATC | 1 cut(s) | 411 |
| BseBI | CCWGG | 1 cut(s) | 1101 |
| BseDI | CCNNGG | 6 cut(s) | 254, 1008, 1021, 1099, 1185, 1347 |
| BseGI | GGATG | 7 cut(s) | 586, 623, 712, 904, 1126, 1195, 1594 |
| BseJI | GATNNNNATC | 1 cut(s) | 411 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 69, 506 |
| BseMII | CTCAG | 5 cut(s) | 171, 255, 360, 515, 1071 |
| BseNI | ACTGG | 4 cut(s) | 130, 785, 959, 1404 |
| BseRI | GAGGAG | 4 cut(s) | 491, 875, 1082, 1436 |
| BseXI | GCAGC | 2 cut(s) | 94, 840 |
| Bsh1236I | CGCG | 2 cut(s) | 170, 1010 |
| BshFI | GGCC | 5 cut(s) | 298, 1020, 1203, 1337, 1361 |
| BsiSI | CCGG | 2 cut(s) | 30, 155 |
| BsiWI | CGTACG | 1 cut(s) | 540 |
| BslFI | GGGAC | 1 cut(s) | 1385 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 69, 506 |
| BsmAI | GTCTC | 1 cut(s) | 344 |
| BsmFI | GGGAC | 1 cut(s) | 1385 |
| BsmI | GAATGC | 1 cut(s) | 643 |
| BsnI | GGCC | 5 cut(s) | 298, 1020, 1203, 1337, 1361 |
| Bsp143I | GATC | 5 cut(s) | 359, 412, 790, 1147, 1473 |
| BspACI | CCGC | 5 cut(s) | 517, 1008, 1010, 1060, 1555 |
| BspANI | GGCC | 5 cut(s) | 298, 1020, 1203, 1337, 1361 |
| BspCNI | CTCAG | 5 cut(s) | 172, 254, 359, 514, 1072 |
| BspFNI | CGCG | 2 cut(s) | 170, 1010 |
| BspLI | GGNNCC | 1 cut(s) | 1149 |
| BspMAI | CTGCAG | 1 cut(s) | 858 |
| BspPI | GGATC | 2 cut(s) | 1142, 1155 |
| BsrI | ACTGG | 4 cut(s) | 130, 785, 959, 1404 |
| BssECI | CCNNGG | 6 cut(s) | 254, 1008, 1021, 1099, 1185, 1347 |
| BssMI | GATC | 5 cut(s) | 359, 412, 790, 1147, 1473 |
| BssNAI | GTATAC | 1 cut(s) | 1705 |
| BssSI | CACGAG | 1 cut(s) | 1525 |
| BssT1I | CCWWGG | 2 cut(s) | 1021, 1185 |
| Bst1107I | GTATAC | 1 cut(s) | 1705 |
| Bst2BI | CACGAG | 1 cut(s) | 1525 |
| Bst2UI | CCWGG | 1 cut(s) | 1101 |
| Bst4CI | ACNGT | 9 cut(s) | 371, 395, 631, 679, 871, 1031, 1297, 1399, 1480 |
| Bst6I | CTCTTC | 3 cut(s) | 468, 761, 1323 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 446 |
| BstBAI | YACGTR | 1 cut(s) | 544 |
| BstDEI | CTNAG | 9 cut(s) | 180, 241, 346, 489, 501, 530, 1080, 1548, 1558 |
| BstDSI | CCRYGG | 2 cut(s) | 1008, 1347 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 504 |
| BstF5I | GGATG | 7 cut(s) | 586, 623, 712, 904, 1126, 1195, 1594 |
| BstFNI | CGCG | 2 cut(s) | 170, 1010 |
| BstHHI | GCGC | 1 cut(s) | 170 |
| BstKTI | GATC | 5 cut(s) | 362, 415, 793, 1150, 1476 |
| BstMAI | GTCTC | 1 cut(s) | 344 |
| BstMBI | GATC | 5 cut(s) | 359, 412, 790, 1147, 1473 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 446 |
| BstNI | CCWGG | 1 cut(s) | 1101 |
| BstNSI | RCATGY | 1 cut(s) | 737 |
| BstSCI | CCNGG | 2 cut(s) | 28, 1099 |
| BstSFI | CTRYAG | 1 cut(s) | 854 |
| BstSNI | TACGTA | 1 cut(s) | 544 |
| BstUI | CGCG | 2 cut(s) | 170, 1010 |
| BstV1I | GCAGC | 2 cut(s) | 94, 840 |
| BstV2I | GAAGAC | 2 cut(s) | 789, 1633 |
| BstX2I | RGATCY | 2 cut(s) | 359, 1147 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1286, 1695 |
| BstYI | RGATCY | 2 cut(s) | 359, 1147 |
| BstZ17I | GTATAC | 1 cut(s) | 1705 |
| BsuI | GTATCC | 1 cut(s) | 186 |
| BsuRI | GGCC | 5 cut(s) | 298, 1020, 1203, 1337, 1361 |
| BtgI | CCRYGG | 2 cut(s) | 1008, 1347 |
| BtgZI | GCGATG | 1 cut(s) | 185 |
| BtsCI | GGATG | 7 cut(s) | 586, 623, 712, 904, 1126, 1195, 1594 |
| BtsI | GCAGTG | 1 cut(s) | 708 |
| BtsIMutI | CAGTG | 8 cut(s) | 137, 376, 627, 708, 1036, 1411, 1476, 1729 |
| CfoI | GCGC | 1 cut(s) | 170 |
| Cfr13I | GGNCC | 3 cut(s) | 251, 778, 1538 |
| Cfr42I | CCGCGG | 1 cut(s) | 1011 |
| Csp6I | GTAC | 3 cut(s) | 541, 746, 1092 |
| CviAII | CATG | 5 cut(s) | 235, 734, 1205, 1286, 1695 |
| CviQI | GTAC | 3 cut(s) | 541, 746, 1092 |
| DdeI | CTNAG | 9 cut(s) | 180, 241, 346, 489, 501, 530, 1080, 1548, 1558 |
| DpnI | GATC | 5 cut(s) | 361, 414, 792, 1149, 1475 |
| DpnII | GATC | 5 cut(s) | 359, 412, 790, 1147, 1473 |
| EaeI | YGGCCR | 1 cut(s) | 1201 |
| Eam1104I | CTCTTC | 3 cut(s) | 468, 761, 1323 |
| EarI | CTCTTC | 3 cut(s) | 468, 761, 1323 |
| Eco105I | TACGTA | 1 cut(s) | 544 |
| Eco130I | CCWWGG | 2 cut(s) | 1021, 1185 |
| Eco47I | GGWCC | 3 cut(s) | 251, 778, 1538 |
| Eco57I | CTGAAG | 2 cut(s) | 492, 1407 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 504 |
| EcoRII | CCWGG | 1 cut(s) | 1099 |
| EcoT14I | CCWWGG | 2 cut(s) | 1021, 1185 |
| ErhI | CCWWGG | 2 cut(s) | 1021, 1185 |
| FaeI | CATG | 5 cut(s) | 238, 737, 1208, 1289, 1698 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 795, 827, 1121, 1153, 1541, 1573 |
| FaqI | GGGAC | 1 cut(s) | 1385 |
| FatI | CATG | 5 cut(s) | 234, 733, 1204, 1285, 1694 |
| FauI | CCCGC | 1 cut(s) | 1053 |
| FblI | GTMKAC | 2 cut(s) | 807, 1704 |
| Fnu4HI | GCNGC | 3 cut(s) | 108, 518, 854 |
| FokI | GGATG | 7 cut(s) | 593, 610, 719, 911, 1133, 1202, 1601 |
| Fsp4HI | GCNGC | 3 cut(s) | 108, 518, 854 |
| FspBI | CTAG | 1 cut(s) | 284 |
| GlaI | GCGC | 1 cut(s) | 169 |
| GluI | GCNGC | 3 cut(s) | 108, 518, 854 |
| GsuI | CTGGAG | 1 cut(s) | 113 |
| HaeIII | GGCC | 5 cut(s) | 298, 1020, 1203, 1337, 1361 |
| HapII | CCGG | 2 cut(s) | 30, 155 |
| HhaI | GCGC | 1 cut(s) | 170 |
| Hin1II | CATG | 5 cut(s) | 238, 737, 1208, 1289, 1698 |
| Hin6I | GCGC | 1 cut(s) | 168 |
| HinP1I | GCGC | 1 cut(s) | 168 |
| HincII | GTYRAC | 3 cut(s) | 367, 667, 1522 |
| HindII | GTYRAC | 3 cut(s) | 367, 667, 1522 |
| HpaI | GTTAAC | 1 cut(s) | 367 |
| HpaII | CCGG | 2 cut(s) | 30, 155 |
| HphI | GGTGA | 4 cut(s) | 422, 584, 1145, 1732 |
| Hpy166II | GTNNAC | 9 cut(s) | 367, 667, 808, 964, 1166, 1300, 1522, 1705, 1729 |
| Hpy188III | TCNNGA | 5 cut(s) | 179, 308, 416, 613, 886 |
| Hpy8I | GTNNAC | 9 cut(s) | 367, 667, 808, 964, 1166, 1300, 1522, 1705, 1729 |
| Hpy99I | CGWCG | 1 cut(s) | 297 |
| HpyAV | CCTTC | 7 cut(s) | 505, 691, 821, 1014, 1327, 1554, 1653 |
| HpyCH4III | ACNGT | 9 cut(s) | 371, 395, 631, 679, 871, 1031, 1297, 1399, 1480 |
| HpyCH4IV | ACGT | 2 cut(s) | 539, 543 |
| HpyCH4V | TGCA | 6 cut(s) | 110, 199, 440, 641, 856, 1457 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 446 |
| HpyF3I | CTNAG | 9 cut(s) | 180, 241, 346, 489, 501, 530, 1080, 1548, 1558 |
| HpySE526I | ACGT | 2 cut(s) | 539, 543 |
| Hsp92II | CATG | 5 cut(s) | 238, 737, 1208, 1289, 1698 |
| HspAI | GCGC | 1 cut(s) | 168 |
| KspAI | GTTAAC | 1 cut(s) | 367 |
| KspI | CCGCGG | 1 cut(s) | 1011 |
| Kzo9I | GATC | 5 cut(s) | 359, 412, 790, 1147, 1473 |
| LmnI | GCTCC | 3 cut(s) | 104, 974, 1659 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 840 |
| LweI | GCATC | 5 cut(s) | 436, 449, 945, 1363, 1579 |
| MaeI | CTAG | 1 cut(s) | 284 |
| MaeII | ACGT | 2 cut(s) | 539, 543 |
| MaeIII | GTNAC | 2 cut(s) | 275, 1133 |
| MalI | GATC | 5 cut(s) | 361, 414, 792, 1149, 1475 |
| MboI | GATC | 5 cut(s) | 359, 412, 790, 1147, 1473 |
| MfeI | CAATTG | 1 cut(s) | 773 |
| MflI | RGATCY | 2 cut(s) | 359, 1147 |
| MlsI | TGGCCA | 1 cut(s) | 1203 |
| MluCI | AATT | 7 cut(s) | 15, 212, 454, 597, 726, 773, 1363 |
| MluNI | TGGCCA | 1 cut(s) | 1203 |
| MlyI | GAGTC | 7 cut(s) | 53, 160, 323, 338, 1202, 1517, 1685 |
| Mox20I | TGGCCA | 1 cut(s) | 1203 |
| MscI | TGGCCA | 1 cut(s) | 1203 |
| MseI | TTAA | 1 cut(s) | 366 |
| MslI | CAYNNNNRTG | 2 cut(s) | 83, 738 |
| Msp20I | TGGCCA | 1 cut(s) | 1203 |
| MspA1I | CMGCKG | 2 cut(s) | 1010, 1079 |
| MspI | CCGG | 2 cut(s) | 30, 155 |
| MspR9I | CCNGG | 2 cut(s) | 30, 1101 |
| MunI | CAATTG | 1 cut(s) | 773 |
| Mva1269I | GAATGC | 1 cut(s) | 643 |
| MvaI | CCWGG | 1 cut(s) | 1101 |
| MvnI | CGCG | 2 cut(s) | 170, 1010 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 446 |
| NciI | CCSGG | 1 cut(s) | 30 |
| NdeII | GATC | 5 cut(s) | 359, 412, 790, 1147, 1473 |
| NlaIII | CATG | 5 cut(s) | 238, 737, 1208, 1289, 1698 |
| NlaIV | GGNNCC | 1 cut(s) | 1149 |
| NmuCI | GTSAC | 1 cut(s) | 1133 |
| NspI | RCATGY | 1 cut(s) | 737 |
| PctI | GAATGC | 1 cut(s) | 643 |
| PfeI | GAWTC | 4 cut(s) | 320, 461, 554, 722 |
| Pfl23II | CGTACG | 1 cut(s) | 540 |
| PkrI | GCNGC | 3 cut(s) | 109, 519, 855 |
| PleI | GAGTC | 7 cut(s) | 53, 159, 322, 338, 1202, 1517, 1685 |
| PpsI | GAGTC | 7 cut(s) | 53, 159, 322, 338, 1202, 1517, 1685 |
| Ppu21I | YACGTR | 1 cut(s) | 544 |
| Psp6I | CCWGG | 1 cut(s) | 1099 |
| PspGI | CCWGG | 1 cut(s) | 1099 |
| PspLI | CGTACG | 1 cut(s) | 540 |
| PspN4I | GGNNCC | 1 cut(s) | 1149 |
| PspPI | GGNCC | 3 cut(s) | 251, 778, 1538 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 667, 699 |
| PstI | CTGCAG | 1 cut(s) | 858 |
| PsuI | RGATCY | 2 cut(s) | 359, 1147 |
| PvuII | CAGCTG | 1 cut(s) | 1079 |
| RsaI | GTAC | 3 cut(s) | 542, 747, 1093 |
| RsaNI | GTAC | 3 cut(s) | 541, 746, 1092 |
| RseI | CAYNNNNRTG | 2 cut(s) | 83, 738 |
| SacII | CCGCGG | 1 cut(s) | 1011 |
| SaqAI | TTAA | 1 cut(s) | 366 |
| SatI | GCNGC | 3 cut(s) | 108, 518, 854 |
| Sau3AI | GATC | 5 cut(s) | 359, 412, 790, 1147, 1473 |
| Sau96I | GGNCC | 3 cut(s) | 251, 778, 1538 |
| SchI | GAGTC | 7 cut(s) | 53, 160, 323, 338, 1202, 1517, 1685 |
| ScrFI | CCNGG | 2 cut(s) | 30, 1101 |
| SfaNI | GCATC | 5 cut(s) | 436, 449, 945, 1363, 1579 |
| SfcI | CTRYAG | 1 cut(s) | 854 |
| Sfr303I | CCGCGG | 1 cut(s) | 1011 |
| SgrBI | CCGCGG | 1 cut(s) | 1011 |
| SinI | GGWCC | 3 cut(s) | 251, 778, 1538 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 83, 738 |
| SnaBI | TACGTA | 1 cut(s) | 544 |
| Sse9I | AATT | 7 cut(s) | 15, 212, 454, 597, 726, 773, 1363 |
| SsiI | CCGC | 5 cut(s) | 517, 1008, 1010, 1060, 1555 |
| SspMI | CTAG | 1 cut(s) | 284 |
| StyD4I | CCNGG | 2 cut(s) | 28, 1099 |
| StyI | CCWWGG | 2 cut(s) | 1021, 1185 |
| TaaI | ACNGT | 9 cut(s) | 371, 395, 631, 679, 871, 1031, 1297, 1399, 1480 |
| TaiI | ACGT | 2 cut(s) | 542, 546 |
| TaqI | TCGA | 1 cut(s) | 1371 |
| TasI | AATT | 7 cut(s) | 15, 212, 454, 597, 726, 773, 1363 |
| TatI | WGTACW | 2 cut(s) | 745, 1091 |
| TauI | GCSGC | 1 cut(s) | 520 |
| TfiI | GAWTC | 4 cut(s) | 320, 461, 554, 722 |
| Tru1I | TTAA | 1 cut(s) | 366 |
| Tru9I | TTAA | 1 cut(s) | 366 |
| TscAI | CASTG | 7 cut(s) | 137, 376, 634, 708, 1036, 1411, 1483 |
| TseFI | GTSAC | 1 cut(s) | 1133 |
| TseI | GCWGC | 2 cut(s) | 107, 853 |
| Tsp45I | GTSAC | 1 cut(s) | 1133 |
| TspDTI | ATGAA | 8 cut(s) | 243, 254, 393, 915, 1137, 1242, 1251, 1472 |
| TspRI | CASTG | 7 cut(s) | 137, 376, 634, 708, 1036, 1411, 1483 |
| VpaK11BI | GGWCC | 3 cut(s) | 251, 778, 1538 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 504 |
| XapI | RAATTY | 2 cut(s) | 212, 454 |
| XceI | RCATGY | 1 cut(s) | 737 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1345, 1692 |
| XmiI | GTMKAC | 2 cut(s) | 807, 1704 |
| XspI | CTAG | 1 cut(s) | 284 |