Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8266255.1

Orthogroup ID

OG0007217

Physical Location & Seq

Genomic Coordinates Reverse (-)

185 .. 727

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8266255.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atggcaacattggggttgggggctgcaaccaaaagaagcatactccagtgtaatgtaggaaacaagagtccggtttatctatgcgcgttgtatcctgagaagatcgagtgtttgcaactacatttggaatttgacgaggctgatgaagtcatgttctcagttcttggtcctcggagtgttcacctggctggttactatctaggtggtcgtcggccttacaatccagatgagtcgtatccttttgttacattattgttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

86

Amino Acids

9.56

Weight (kDa)

5.53

Isoelectric Point (pI)

69.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12340 AT3G12340 AT3G12340
fragaria_vesca	FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890
malus_domestica	MD00G1063900.v1.1
prunus_persica	Prupe.2G145400_v2.0.a1
pyrus_communis	pycom16g26260
rosa_chinensis	RchiOBHm_Chr1g0350561
rosa_laevigata	RLG00000028473
rosa_multiflora	Rmu_co8266255.1_g000001 Rmu_sc0009041.1_g000004
rosa_roxburghii	Rroxscaffold_4G00304730
rosa_rugosa	Rorug01G0212200
rosa_samantha	Rh1AG226700 Rh1BG195400 Rh1CG211500 Rh1DG223400
rosa_wichuraiana	Rw1G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	185
BciVI	GTATCC	2 cut(s)	102, 246
BfaI	CTAG	1 cut(s)	200
BfuI	GTATCC	2 cut(s)	102, 246
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	170
BseMII	CTCAG	2 cut(s)	87, 171
BseNI	ACTGG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	71
BsnI	GGCC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	102
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	2 cut(s)	88, 170
BspFNI	CGCG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	96, 157
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	10
BsuI	GTATCC	2 cut(s)	102, 246
BsuRI	GGCC	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	53
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	167
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	4 cut(s)	23, 140, 188, 214
CviKI_1	RGCY	4 cut(s)	23, 140, 188, 214
DdeI	CTNAG	2 cut(s)	96, 157
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	154
FaiI	YATR	4 cut(s)	41, 82, 152, 259
FatI	CATG	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	67, 230
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	2 cut(s)	95, 224
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	26, 115
HpyF3I	CTNAG	2 cut(s)	96, 157
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	7 cut(s)	59, 84, 108, 170, 174, 197, 237
Lsp1109I	GCAGC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	191, 244
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	1 cut(s)	112
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	76, 239
MnlI	CCTC	2 cut(s)	130, 180
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	86
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	2 cut(s)	75, 238
PpsI	GAGTC	2 cut(s)	75, 238
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	167
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	76, 239
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	2 cut(s)	186, 205
SinI	GGWCC	1 cut(s)	167
Sse9I	AATT	1 cut(s)	128
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	183
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	128
TscAI	CASTG	1 cut(s)	53
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.