Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007217

Physical Location & Seq

Genomic Coordinates Forward (+)

30144947 .. 30145279

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0212200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAAGACATCTTTGACAACATGAAGACTACTTCCGATGAAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTTCGAAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

110

Amino Acids

11.77

Weight (kDa)

4.77

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12340 AT3G12340 AT3G12340
fragaria_vesca	FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890 FvH4_7g11890
malus_domestica	MD00G1063900.v1.1
prunus_persica	Prupe.2G145400_v2.0.a1
pyrus_communis	pycom16g26260
rosa_chinensis	RchiOBHm_Chr1g0350561
rosa_laevigata	RLG00000028473
rosa_multiflora	Rmu_co8266255.1_g000001 Rmu_sc0009041.1_g000004
rosa_roxburghii	Rroxscaffold_4G00304730
rosa_rugosa	Rorug01G0212200
rosa_samantha	Rh1AG226700 Rh1BG195400 Rh1CG211500 Rh1DG223400
rosa_wichuraiana	Rw1G019590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	249, 328
AclWI	GGATC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	81, 176
AhlI	ACTAGT	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	165
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	89, 283, 308
AluI	AGCT	3 cut(s)	89, 283, 308
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	155, 215
AsuII	TTCGAA	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	213, 233
Bbv12I	GWGCWC	1 cut(s)	285
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	2 cut(s)	69, 102
BisI	GCNGC	1 cut(s)	328
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	167
BpiI	GAAGAC	2 cut(s)	213, 233
BpmI	CTGGAG	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	99, 298
BseRI	GAGGAG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	44, 160
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	2 cut(s)	249, 328
BspCNI	CTCAG	2 cut(s)	98, 297
BspPI	GGATC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	322
BssMI	GATC	2 cut(s)	44, 160
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	189, 257
Bst6I	CTCTTC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	85, 284
BstKTI	GATC	2 cut(s)	47, 163
BstMBI	GATC	2 cut(s)	44, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstV2I	GAAGAC	2 cut(s)	213, 233
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	185
CviAII	CATG	5 cut(s)	55, 121, 142, 200, 223
CviJI	RGCY	6 cut(s)	89, 264, 283, 288, 308, 327
CviKI_1	RGCY	6 cut(s)	89, 264, 283, 288, 308, 327
DdeI	CTNAG	2 cut(s)	85, 284
DpnI	GATC	2 cut(s)	46, 162
DpnII	GATC	2 cut(s)	44, 160
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	5 cut(s)	58, 124, 145, 203, 226
FaiI	YATR	8 cut(s)	33, 42, 50, 56, 122, 143, 201, 224
FatI	CATG	5 cut(s)	54, 120, 141, 199, 222
Fnu4HI	GCNGC	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	2 cut(s)	69, 102
GluI	GCNGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	111
Hin1II	CATG	5 cut(s)	58, 124, 145, 203, 226
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HpaI	GTTAAC	1 cut(s)	13
HphI	GGTGA	2 cut(s)	155, 215
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	189, 257
HpyCH4V	TGCA	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	2 cut(s)	85, 284
Hsp92II	CATG	5 cut(s)	58, 124, 145, 203, 226
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	44, 160
LpnPI	CCDG	5 cut(s)	75, 152, 179, 294, 307
MaeI	CTAG	2 cut(s)	69, 102
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	2 cut(s)	46, 162
MboI	GATC	2 cut(s)	44, 160
MboII	GAAGA	4 cut(s)	73, 170, 218, 238
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	285
MnlI	CCTC	3 cut(s)	86, 146, 292
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	89, 330
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	2 cut(s)	44, 160
NlaIII	CATG	5 cut(s)	58, 124, 145, 203, 226
NmuCI	GTSAC	1 cut(s)	251
NspV	TTCGAA	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PsrI	GAACNNNNNNTAC	2 cut(s)	91, 123
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	2 cut(s)	44, 160
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	4 cut(s)	91, 247, 285, 310
SfuI	TTCGAA	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	101
SsiI	CCGC	2 cut(s)	249, 328
SspMI	CTAG	2 cut(s)	69, 102
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	189, 257
TaqI	TCGA	1 cut(s)	322
TauI	GCSGC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	5 cut(s)	65, 130, 137, 239, 255
TspRI	CASTG	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	2 cut(s)	69, 102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.