Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011752

Physical Location & Seq

Genomic Coordinates Forward (+)

3942257 .. 3943809

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACTACCGAAGAGAAAGAGATCCTCGCCGCCAAATTGGAAGAACAGAAGATCGATCTCGATAAGCCCGAAGTTGAGGACGATGATGATAACGAAGACGATGACTCTGATGACGATGATAAGGATGATGACGAGGCTGATGGACTAGATGGAGAGGCAGGAGGTAAGTCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAGCTTGGCATGAAACCCATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTCATATCAAAGCCTGATGTGTTCAAGAGTCCAGCATCAGACACATATGTGATCTTTGGAGAGGCGAAGATCGAGGATTTGAGCTCTCAGATCCAGTCGCAAGCAGCAGAGCAATTCAAGGCACCAGATCTCAGCAATGTGATCTCAAAGGGTGAGTCATCGAGCGCTGCAGTGGTTCAGGATGATGAGGAGGTTGACGAGGAAGGTGTTGAGCCAAAGGACATTGAGTTGGTGATGACTCAAGCAGGAGTGTCTAGGCCAAATGCTGTGAAGGCTCTCAAGGCTGCAGATGGAGATATTGTCTCTGCCATCATGGAGCTTACCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0012505 GO:0022626 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0055044 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

203

Amino Acids

21.98

Weight (kDa)

4.3

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	63 - 118	3.7e-23	NAC domain
UBA_HYPK	PF19026	164 - 202	8.9e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12390 AT5G13850
fragaria_vesca	FvH4_7g04351
malus_domestica	MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica	Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis	pycom03g14650 pycom11g18620
rosa_chinensis	RchiOBHm_Chr1g0329361
rosa_laevigata	RLG00000029899
rosa_multiflora	Rmu_sc0001359.1_g000007
rosa_roxburghii	Rroxscaffold_4G00321180
rosa_rugosa	Rorug01G0078800
rosa_samantha	Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana	Rw1G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	403
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	2 cut(s)	16, 367
AfeI	AGCGCT	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	307, 400
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	3 cut(s)	217, 366, 601
AluI	AGCT	3 cut(s)	217, 366, 601
Alw21I	GWGCWC	1 cut(s)	368
Alw26I	GTCTC	1 cut(s)	589
AlwI	GGATC	2 cut(s)	16, 367
Aor51HI	AGCGCT	1 cut(s)	448
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	386, 449, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AspLEI	GCGC	1 cut(s)	449
AsuHPI	GGTGA	3 cut(s)	244, 446, 526
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	398, 436, 553
BccI	CCATC	5 cut(s)	134, 143, 239, 566, 599
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	2 cut(s)	146, 537
BfmI	CTRYAG	2 cut(s)	450, 567
BfoI	RGCGCY	1 cut(s)	450
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	4 cut(s)	30, 387, 450, 567
BlsI	GCNGC	4 cut(s)	31, 388, 451, 568
BmiI	GGNNCC	1 cut(s)	405
BmsI	GCATC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	102
BpuEI	CTTGAG	3 cut(s)	197, 507, 545
Bsa29I	ATCGAT	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	241, 376
Bse3DI	GCAATG	1 cut(s)	424
BseCI	ATCGAT	1 cut(s)	54
BseGI	GGATG	2 cut(s)	130, 469
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	383, 427
BseNI	ACTGG	2 cut(s)	241, 376
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	3 cut(s)	398, 436, 553
BshFI	GGCC	1 cut(s)	541
BshNI	GGYRCC	1 cut(s)	403
BshVI	ATCGAT	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	8 cut(s)	21, 51, 55, 333, 351, 372, 409, 423
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	2 cut(s)	382, 426
BspDI	ATCGAT	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	2 cut(s)	454, 571
BspPI	GGATC	2 cut(s)	16, 367
BspT107I	GGYRCC	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	241, 376
BssMI	GATC	8 cut(s)	21, 51, 55, 333, 351, 372, 409, 423
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	2 cut(s)	6, 188
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	369, 413
BstF5I	GGATG	2 cut(s)	130, 469
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	8 cut(s)	24, 54, 58, 336, 354, 375, 412, 426
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	8 cut(s)	21, 51, 55, 333, 351, 372, 409, 423
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 563
BstSFI	CTRYAG	2 cut(s)	450, 567
BstV1I	GCAGC	3 cut(s)	398, 436, 553
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	3 cut(s)	21, 372, 409
BstYI	RGATCY	3 cut(s)	21, 372, 409
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	541
BsuTUI	ATCGAT	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	130, 469
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	234, 459
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	1 cut(s)	449
ClaI	ATCGAT	1 cut(s)	54
CviAII	CATG	3 cut(s)	208, 223, 595
DdeI	CTNAG	2 cut(s)	369, 413
DpnI	GATC	8 cut(s)	23, 53, 57, 335, 353, 374, 411, 425
DpnII	GATC	8 cut(s)	21, 51, 55, 333, 351, 372, 409, 423
Eam1104I	CTCTTC	2 cut(s)	6, 188
EarI	CTCTTC	2 cut(s)	6, 188
Ecl136II	GAGCTC	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	368
Eco47III	AGCGCT	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	368
FaeI	CATG	3 cut(s)	211, 226, 598
FaiI	YATR	6 cut(s)	209, 224, 287, 328, 330, 596
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	3 cut(s)	207, 222, 594
FauNDI	CATATG	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	30, 387, 450, 567
FokI	GGATG	2 cut(s)	137, 476
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	4 cut(s)	30, 387, 450, 567
FspBI	CTAG	2 cut(s)	146, 537
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	4 cut(s)	30, 387, 450, 567
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	541
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	211, 226, 598
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	6 cut(s)	104, 196, 249, 310, 437, 520
HphI	GGTGA	3 cut(s)	244, 446, 526
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	3 cut(s)	109, 322, 372
Hpy188III	TCNNGA	3 cut(s)	59, 307, 461
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	2 cut(s)	479, 547
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	452, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 563
HpyF3I	CTNAG	2 cut(s)	369, 413
Hsp92II	CATG	3 cut(s)	211, 226, 598
HspAI	GCGC	1 cut(s)	447
Kzo9I	GATC	8 cut(s)	21, 51, 55, 333, 351, 372, 409, 423
LmnI	GCTCC	1 cut(s)	598
LpnPI	CCDG	8 cut(s)	144, 222, 309, 327, 389, 420, 446, 513
Lsp1109I	GCAGC	3 cut(s)	398, 436, 553
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	2 cut(s)	146, 537
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	8 cut(s)	23, 53, 57, 335, 353, 374, 411, 425
MboI	GATC	8 cut(s)	21, 51, 55, 333, 351, 372, 409, 423
MboII	GAAGA	7 cut(s)	23, 53, 61, 107, 202, 205, 361
MflI	RGATCY	3 cut(s)	21, 372, 409
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	2 cut(s)	35, 395
MlyI	GAGTC	6 cut(s)	98, 205, 258, 319, 446, 514
MslI	CAYNNNNRTG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	554, 563
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	8 cut(s)	21, 51, 55, 333, 351, 372, 409, 423
NlaIII	CATG	3 cut(s)	211, 226, 598
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	250
OliI	CACNNNNGTG	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PkrI	GCNGC	4 cut(s)	31, 388, 451, 568
PleI	GAGTC	6 cut(s)	98, 204, 257, 318, 445, 514
PpsI	GAGTC	6 cut(s)	98, 204, 257, 318, 445, 514
Psp124BI	GAGCTC	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	405
PstI	CTGCAG	2 cut(s)	454, 571
PsuI	RGATCY	3 cut(s)	21, 372, 409
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	368
SatI	GCNGC	4 cut(s)	30, 387, 450, 567
Sau3AI	GATC	8 cut(s)	21, 51, 55, 333, 351, 372, 409, 423
SchI	GAGTC	6 cut(s)	98, 205, 258, 319, 446, 514
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	7 cut(s)	166, 219, 368, 477, 490, 603, 611
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	2 cut(s)	450, 567
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	3 cut(s)	212, 522, 560
SmoI	CTYRAG	3 cut(s)	212, 522, 560
Sse9I	AATT	2 cut(s)	35, 395
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	2 cut(s)	146, 537
SstI	GAGCTC	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	4 cut(s)	54, 60, 354, 443
TasI	AATT	2 cut(s)	35, 395
TauI	GCSGC	1 cut(s)	32
TscAI	CASTG	2 cut(s)	241, 459
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	386, 449, 566
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	2 cut(s)	241, 459
XspI	CTAG	2 cut(s)	146, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.