pycom11g18620
NAC Family

Nascent polypeptide-associated complex subunit alpha-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011752
Physical Location & Seq
Reverse (-)
20776747 .. 20779324
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18620.2

Sequence Viewer

Length: 603 bp
ATGACTGCCCAAACTCAGGAAGAGCTCCTTGCTGCCCAACTCGAACAACAAAAAGTTAATGATGATGAGCCGATAGTCGAGGACGAAGATGACGATGACGATGACGATGATGAAGATGATGACCAAGATGAAGATGTAGAAGGACAAGGAGATGCAAGTGGTAGGTCTAAGCAGAGCAGAAGTGAAAAGAAGAGTCGCAAAGCGATGTTGAAACTTGGAATGAAAGGAATTCCAGGTGTCAGCCGTGTGACTGTCAAGAAGAGCAAGAACATTCTGTTCGTGATCTCAAAGCCAGATGTTTTTAAGAGCCCCGCATCTGACACGTATGTCATTTTTGGGGAAGCAAAGATTGAGGACCTGAGCTCACAGCTTCAAACCCAGGCCGCGGAGCAGTTCAAGGCTCCTAATCTAAATACTGTGACAGCAAACCCAGAGCCATCAACTTTGGCTCAAGACGATGAAGATGTAGACGAAACTGGTGTGGAGCCCAAGGACATTGAGTTGGTGATGACTCAAGCTGGGGTTTCAAGATCAAGAGCGGTTAAGGCACTCAAAGCAGCAGACGGTGACATTGTTTCTGCCATTATGGAATTAACAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAC

Protein Analysis

201

Amino Acids

21.79

Weight (kDa)

4.22

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011752)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12390 AT5G13850
fragaria_vesca FvH4_7g04351
malus_domestica MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis pycom03g14650 pycom11g18620
rosa_chinensis RchiOBHm_Chr1g0329361
rosa_laevigata RLG00000029899
rosa_multiflora Rmu_sc0001359.1_g000007
rosa_roxburghii Rroxscaffold_4G00321180
rosa_rugosa Rorug01G0078800
rosa_samantha Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana Rw1G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 539
AccI GTMKAC 1 cut(s) 468
AccII CGCG 1 cut(s) 386
AciI CCGC 4 cut(s) 312, 384, 386, 539
AcsI RAATTY 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 16, 385
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 4 cut(s) 211, 374, 397, 528
AjnI CCWGG 2 cut(s) 232, 378
AluBI AGCT 4 cut(s) 25, 363, 370, 518
AluI AGCT 4 cut(s) 25, 363, 370, 518
Alw21I GWGCWC 2 cut(s) 27, 365
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 2 cut(s) 32, 557
ApoI RAATTY 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 2 cut(s) 517, 578
AvaII GGWCC 1 cut(s) 355
BanII GRGCYC 4 cut(s) 27, 311, 365, 489
Bbv12I GWGCWC 2 cut(s) 27, 365
BbvI GCAGC 2 cut(s) 19, 569
BccI CCATC 1 cut(s) 445
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 2 cut(s) 234, 380
BisI GCNGC 3 cut(s) 33, 384, 558
BlsI GCNGC 3 cut(s) 34, 385, 559
Bme1390I CCNGG 2 cut(s) 234, 380
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 2 cut(s) 402, 486
BmrFI CCNGG 2 cut(s) 234, 380
BmsI GCATC 2 cut(s) 142, 323
Bpu10I CCTNAGC 1 cut(s) 359
BpuEI CTTGAG 2 cut(s) 435, 498
BsaAI YACGTR 1 cut(s) 324
BsaJI CCNNGG 3 cut(s) 378, 384, 489
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 385
Bse1I ACTGG 1 cut(s) 481
BseBI CCWGG 2 cut(s) 234, 380
BseDI CCNNGG 3 cut(s) 378, 384, 489
BseLI CCNNNNNNNGG 2 cut(s) 16, 385
BseMII CTCAG 2 cut(s) 29, 350
BseNI ACTGG 1 cut(s) 481
BseXI GCAGC 2 cut(s) 19, 569
BseYI CCCAGC 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 27, 365
BslI CCNNNNNNNGG 2 cut(s) 16, 385
BsnI GGCC 1 cut(s) 383
Bsp1286I GDGCHC 4 cut(s) 27, 311, 365, 489
Bsp143I GATC 2 cut(s) 282, 530
BspACI CCGC 4 cut(s) 312, 384, 386, 539
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 2 cut(s) 28, 351
BspFNI CGCG 1 cut(s) 386
BspLI GGNNCC 2 cut(s) 402, 486
BspQI GCTCTTC 2 cut(s) 15, 254
BsrBI CCGCTC 1 cut(s) 539
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 3 cut(s) 378, 384, 489
BssMI GATC 2 cut(s) 282, 530
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 234, 380
Bst4CI ACNGT 3 cut(s) 253, 418, 566
Bst6I CTCTTC 3 cut(s) 15, 185, 254
BstBAI YACGTR 1 cut(s) 324
BstDEI CTNAG 3 cut(s) 15, 168, 359
BstDSI CCRYGG 1 cut(s) 384
BstFNI CGCG 1 cut(s) 386
BstKTI GATC 2 cut(s) 285, 533
BstMBI GATC 2 cut(s) 282, 530
BstMWI GCNNNNNNNGC 2 cut(s) 545, 554
BstNI CCWGG 2 cut(s) 234, 380
BstSCI CCNGG 2 cut(s) 232, 378
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 19, 569
BsuRI GGCC 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 355
Cfr42I CCGCGG 1 cut(s) 387
DdeI CTNAG 3 cut(s) 15, 168, 359
DpnI GATC 2 cut(s) 284, 532
DpnII GATC 2 cut(s) 282, 530
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eam1104I CTCTTC 3 cut(s) 15, 185, 254
EarI CTCTTC 3 cut(s) 15, 185, 254
Ecl136II GAGCTC 2 cut(s) 25, 363
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 4 cut(s) 27, 311, 365, 489
Eco47I GGWCC 1 cut(s) 355
Eco53kI GAGCTC 2 cut(s) 25, 363
EcoICRI GAGCTC 2 cut(s) 25, 363
EcoO109I RGGNCCY 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 232, 378
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 4 cut(s) 27, 311, 365, 489
ErhI CCWWGG 1 cut(s) 489
FaiI YATR 2 cut(s) 327, 587
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FauI CCCGC 1 cut(s) 319
FblI GTMKAC 1 cut(s) 468
Fnu4HI GCNGC 3 cut(s) 33, 384, 558
FriOI GRGCYC 4 cut(s) 27, 311, 365, 489
Fsp4HI GCNGC 3 cut(s) 33, 384, 558
GluI GCNGC 3 cut(s) 33, 384, 558
GsaI CCCAGC 1 cut(s) 522
HaeIII GGCC 1 cut(s) 383
HinfI GANTC 2 cut(s) 193, 511
HphI GGTGA 2 cut(s) 517, 578
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 6 cut(s) 17, 256, 280, 452, 528, 534
Hpy8I GTNNAC 1 cut(s) 469
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 3 cut(s) 253, 418, 566
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 545, 554
HpyF3I CTNAG 3 cut(s) 15, 168, 359
HpySE526I ACGT 1 cut(s) 323
KspI CCGCGG 1 cut(s) 387
Kzo9I GATC 2 cut(s) 282, 530
LguI GCTCTTC 2 cut(s) 15, 254
LmnI GCTCC 4 cut(s) 30, 388, 406, 484
Lsp1109I GCAGC 2 cut(s) 19, 569
LweI GCATC 2 cut(s) 142, 323
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 3 cut(s) 247, 418, 566
MalI GATC 2 cut(s) 284, 532
MbiI CCGCTC 1 cut(s) 539
MboI GATC 2 cut(s) 282, 530
MboII GAAGA 7 cut(s) 32, 98, 125, 143, 202, 271, 473
MhlI GDGCHC 4 cut(s) 27, 311, 365, 489
MluCI AATT 2 cut(s) 228, 590
MlyI GAGTC 2 cut(s) 202, 505
MnlI CCTC 2 cut(s) 73, 346
MseI TTAA 4 cut(s) 57, 303, 543, 593
MspA1I CMGCKG 1 cut(s) 386
MspR9I CCNGG 2 cut(s) 234, 380
MvaI CCWGG 2 cut(s) 234, 380
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 545, 554
NdeII GATC 2 cut(s) 282, 530
NlaIV GGNNCC 2 cut(s) 402, 486
NmuCI GTSAC 3 cut(s) 247, 418, 566
PciSI GCTCTTC 2 cut(s) 15, 254
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 3 cut(s) 34, 385, 559
PleI GAGTC 2 cut(s) 201, 505
PpsI GAGTC 2 cut(s) 201, 505
Ppu21I YACGTR 1 cut(s) 324
PpuMI RGGWCCY 1 cut(s) 355
Psp124BI GAGCTC 2 cut(s) 27, 365
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 2 cut(s) 232, 378
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 2 cut(s) 232, 378
PspN4I GGNNCC 2 cut(s) 402, 486
PspPI GGNCC 1 cut(s) 355
PspPPI RGGWCCY 1 cut(s) 355
SacI GAGCTC 2 cut(s) 27, 365
SacII CCGCGG 1 cut(s) 387
SapI GCTCTTC 2 cut(s) 15, 254
SaqAI TTAA 4 cut(s) 57, 303, 543, 593
SatI GCNGC 3 cut(s) 33, 384, 558
Sau3AI GATC 2 cut(s) 282, 530
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 2 cut(s) 202, 505
ScrFI CCNGG 2 cut(s) 234, 380
SduI GDGCHC 4 cut(s) 27, 311, 365, 489
SetI ASST 8 cut(s) 27, 167, 238, 326, 360, 365, 372, 520
SfaNI GCATC 2 cut(s) 142, 323
Sfr303I CCGCGG 1 cut(s) 387
SgrBI CCGCGG 1 cut(s) 387
SinI GGWCC 1 cut(s) 355
SmlI CTYRAG 2 cut(s) 450, 513
SmoI CTYRAG 2 cut(s) 450, 513
Sse9I AATT 2 cut(s) 228, 590
SsiI CCGC 4 cut(s) 312, 384, 386, 539
SstI GAGCTC 2 cut(s) 27, 365
StyD4I CCNGG 2 cut(s) 232, 378
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 3 cut(s) 253, 418, 566
TaiI ACGT 1 cut(s) 326
TaqI TCGA 2 cut(s) 42, 78
TasI AATT 2 cut(s) 228, 590
TauI GCSGC 1 cut(s) 386
Tru1I TTAA 4 cut(s) 57, 303, 543, 593
Tru9I TTAA 4 cut(s) 57, 303, 543, 593
TseFI GTSAC 3 cut(s) 247, 418, 566
TseI GCWGC 2 cut(s) 32, 557
Tsp45I GTSAC 3 cut(s) 247, 418, 566
TspDTI ATGAA 4 cut(s) 126, 144, 236, 474
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.