Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011752

Physical Location & Seq

Genomic Coordinates Forward (+)

20076199 .. 20078613

Gene Structure 2415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG094000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTGAAGCTAGGAATGAAATCTATTCCAGGAGTTAGCCGGGTCACAGTAAAAAAGAGCAAGAATATCTTATTTGTGATATCCAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTATGTTATCTTTGGTGAGGCAAAGATTGAGGATTTGAGCTCACAACTGCAGACTCAGGCTGCAGAGCAGTTTAAAGCTCCTGATCTCAGTCATGTGATTTCCAAACCAGAGACCTCGGCCATAGCCCAGGACGATGAAGATGTAGATGAGACCGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTATCTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCTGAGGGAGACATTGTTTCTGCTATCATGGAACTTACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

132

Amino Acids

14.22

Weight (kDa)

5.02

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	1 - 49	3.8e-19	NAC domain
UBA_HYPK	PF19026	92 - 131	7.7e-13	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12390 AT5G13850
fragaria_vesca	FvH4_7g04351
malus_domestica	MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica	Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis	pycom03g14650 pycom11g18620
rosa_chinensis	RchiOBHm_Chr1g0329361
rosa_laevigata	RLG00000029899
rosa_multiflora	Rmu_sc0001359.1_g000007
rosa_roxburghii	Rroxscaffold_4G00321180
rosa_rugosa	Rorug01G0078800
rosa_samantha	Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana	Rw1G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	237
AcuI	CTGAAG	3 cut(s)	26, 96, 368
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	28, 246
AluBI	AGCT	3 cut(s)	10, 159, 197
AluI	AGCT	3 cut(s)	10, 159, 197
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	3 cut(s)	224, 263, 357
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	179, 353
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	146, 313
BanII	GRGCYC	3 cut(s)	107, 161, 285
Bbv12I	GWGCWC	1 cut(s)	161
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	166, 340
BciT130I	CCWGG	2 cut(s)	30, 248
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	3 cut(s)	224, 263, 357
BfaI	CTAG	2 cut(s)	11, 324
BfmI	CTRYAG	2 cut(s)	167, 180
BisI	GCNGC	2 cut(s)	180, 354
BlsI	GCNGC	2 cut(s)	181, 355
Bme1390I	CCNGG	3 cut(s)	30, 41, 248
BmrFI	CCNGG	3 cut(s)	30, 41, 248
Bpu10I	CCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	41
BsaI	GGTCTC	2 cut(s)	224, 263
BsaJI	CCNNGG	3 cut(s)	234, 246, 285
BsaWI	WCCGGW	2 cut(s)	88, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
BseBI	CCWGG	2 cut(s)	30, 248
BseDI	CCNNGG	3 cut(s)	234, 246, 285
BseGI	GGATG	1 cut(s)	97
BseMII	CTCAG	3 cut(s)	188, 220, 348
BseXI	GCAGC	2 cut(s)	166, 340
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	3 cut(s)	40, 89, 273
BsmAI	GTCTC	3 cut(s)	224, 263, 357
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	2 cut(s)	224, 263
Bsp1286I	GDGCHC	3 cut(s)	107, 161, 285
Bsp143I	GATC	2 cut(s)	202, 326
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	3 cut(s)	187, 219, 349
BspMAI	CTGCAG	2 cut(s)	171, 184
BspTNI	GGTCTC	2 cut(s)	224, 263
BssECI	CCNNGG	3 cut(s)	234, 246, 285
BssMI	GATC	2 cut(s)	202, 326
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	30, 248
Bst4CI	ACNGT	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	174, 206, 357
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	205, 329
BstMAI	GTCTC	3 cut(s)	224, 263, 357
BstMBI	GATC	2 cut(s)	202, 326
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 350
BstNI	CCWGG	2 cut(s)	30, 248
BstSCI	CCNGG	3 cut(s)	28, 39, 246
BstSFI	CTRYAG	2 cut(s)	167, 180
BstV1I	GCAGC	2 cut(s)	166, 340
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	344
CviAII	CATG	2 cut(s)	212, 382
DdeI	CTNAG	3 cut(s)	174, 206, 357
DpnI	GATC	2 cut(s)	204, 328
DpnII	GATC	2 cut(s)	202, 326
DraI	TTTAAA	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	3 cut(s)	107, 161, 285
Eco31I	GGTCTC	2 cut(s)	224, 263
Eco32I	GATATC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	26, 96, 368
EcoICRI	GAGCTC	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	28, 246
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	3 cut(s)	107, 161, 285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	215, 385
FaiI	YATR	4 cut(s)	123, 213, 242, 383
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	2 cut(s)	211, 381
Fnu4HI	GCNGC	2 cut(s)	180, 354
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	3 cut(s)	107, 161, 285
Fsp4HI	GCNGC	2 cut(s)	180, 354
FspBI	CTAG	2 cut(s)	11, 324
GluI	GCNGC	2 cut(s)	180, 354
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	3 cut(s)	40, 89, 273
Hin1II	CATG	2 cut(s)	215, 385
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	3 cut(s)	40, 89, 273
HphI	GGTGA	2 cut(s)	146, 313
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	3 cut(s)	100, 200, 324
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	169, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 350
HpyF3I	CTNAG	3 cut(s)	174, 206, 357
Hsp92II	CATG	2 cut(s)	215, 385
Kzo9I	GATC	2 cut(s)	202, 326
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	166, 340
MaeI	CTAG	2 cut(s)	11, 324
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	204, 328
MboI	GATC	2 cut(s)	202, 326
MboII	GAAGA	1 cut(s)	269
MhlI	GDGCHC	3 cut(s)	107, 161, 285
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	4 cut(s)	130, 142, 244, 352
MseI	TTAA	1 cut(s)	192
MspI	CCGG	3 cut(s)	40, 89, 273
MspR9I	CCNGG	3 cut(s)	30, 41, 248
MvaI	CCWGG	2 cut(s)	30, 248
MwoI	GCNNNNNNNGC	2 cut(s)	341, 350
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	202, 326
NlaIII	CATG	2 cut(s)	215, 385
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	43
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	181, 355
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	28, 246
PspGI	CCWGG	2 cut(s)	28, 246
PstI	CTGCAG	2 cut(s)	171, 184
SacI	GAGCTC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	180, 354
Sau3AI	GATC	2 cut(s)	202, 326
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	3 cut(s)	30, 41, 248
SduI	GDGCHC	3 cut(s)	107, 161, 285
SetI	ASST	5 cut(s)	12, 122, 161, 199, 236
SfcI	CTRYAG	2 cut(s)	167, 180
SspMI	CTAG	2 cut(s)	11, 324
SstI	GAGCTC	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	28, 39, 246
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	179, 353
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	32, 270
TspRI	CASTG	1 cut(s)	351
XbaI	TCTAGA	1 cut(s)	323
XspI	CTAG	2 cut(s)	11, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.