MD11G1210600.v1.1
NAC Family

Nascent polypeptide-associated complex subunit alpha-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011752
Physical Location & Seq
Reverse (-)
30796953 .. 30800606
3654 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1210600.v1.1.491

Sequence Viewer

Length: 630 bp
ATGAATTGTTTAATTGATTGCAGAATCATGACTGCCCAAACTCAAGAAGAGCTCCTTGCTGCCCAACTCGAACAGCAAAAAGTTCATGATGATGAGCCAATAGTCGAGGACGAAGATGACGATGACGACGATGATGATGAAGATGATGACCAAGATGAAGATGTTGAAGGACAAGGAGATGCAACTGGTAGGTCTAAGCAGAGCAGAAGTGAAAAGAAGAGTCGCAAAGCGATGTTGAAACTTGGAATGAAAGGAATTCCAGGTGTCAGCCGTGTGACTGTCAAGAAGAGCAAGAATATTCTCTTCGTCATCTCAAAGCCAGATGTTTTTAAGAGCCCCGCATCCGACACATATGTCATTTTTGGGGAAGCAAAGATTGAGGACTTGAGCTCACAACTTCAAACTCAGGCTGCGGAGCAGTTCAAGGCTCCTAATGTAAGTGCTGTGACAGCAAACCCTGAGCCATCAACTTTGGCTCAAGACGATGAAGATGTAGACGAAACTGGTGTGGAACCCAAGGACATTGAGTTGGTGATGACTCAAGCTGGGGTTTCAAGATCAAGGGCAGTTAAGGCACTCAAAGCAGCAAACGGTGACATTGTTTCTGCCATTATGGAATTAACAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAC

Protein Analysis

210

Amino Acids

22.82

Weight (kDa)

4.3

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 71 - 126 1.3e-22 NAC domain
UBA_HYPK PF19026 169 - 208 7.4e-13 HYPK UBA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011752)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12390 AT5G13850
fragaria_vesca FvH4_7g04351
malus_domestica MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis pycom03g14650 pycom11g18620
rosa_chinensis RchiOBHm_Chr1g0329361
rosa_laevigata RLG00000029899
rosa_multiflora Rmu_sc0001359.1_g000007
rosa_roxburghii Rroxscaffold_4G00321180
rosa_rugosa Rorug01G0078800
rosa_samantha Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana Rw1G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AccI GTMKAC 1 cut(s) 495
AciI CCGC 2 cut(s) 339, 413
AcsI RAATTY 1 cut(s) 255
AgsI TTSAA 5 cut(s) 167, 238, 401, 424, 555
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 3 cut(s) 52, 390, 545
AluI AGCT 3 cut(s) 52, 390, 545
Alw21I GWGCWC 2 cut(s) 54, 392
ApeKI GCWGC 3 cut(s) 59, 410, 584
ApoI RAATTY 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 544, 605
BanII GRGCYC 3 cut(s) 54, 338, 392
Bbv12I GWGCWC 2 cut(s) 54, 392
BbvI GCAGC 3 cut(s) 46, 397, 596
BccI CCATC 1 cut(s) 472
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 261
BisI GCNGC 3 cut(s) 60, 411, 585
BlsI GCNGC 3 cut(s) 61, 412, 586
Bme1390I CCNGG 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 429, 513
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 169, 350
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 4 cut(s) 27, 406, 462, 525
BsaJI CCNNGG 1 cut(s) 516
Bse1I ACTGG 2 cut(s) 190, 508
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 1 cut(s) 341
BseMII CTCAG 2 cut(s) 419, 450
BseNI ACTGG 2 cut(s) 190, 508
BseXI GCAGC 3 cut(s) 46, 397, 596
BseYI CCCAGC 1 cut(s) 545
BsiHKAI GWGCWC 2 cut(s) 54, 392
Bsp1286I GDGCHC 3 cut(s) 54, 338, 392
Bsp143I GATC 1 cut(s) 557
BspACI CCGC 2 cut(s) 339, 413
BspCNI CTCAG 2 cut(s) 418, 451
BspHI TCATGA 2 cut(s) 27, 85
BspLI GGNNCC 2 cut(s) 429, 513
BspQI GCTCTTC 2 cut(s) 42, 281
BsrI ACTGG 2 cut(s) 190, 508
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 280, 593
Bst6I CTCTTC 4 cut(s) 42, 212, 281, 308
BstDEI CTNAG 3 cut(s) 195, 405, 459
BstF5I GGATG 1 cut(s) 341
BstKTI GATC 1 cut(s) 560
BstMBI GATC 1 cut(s) 557
BstMWI GCNNNNNNNGC 3 cut(s) 449, 572, 581
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstV1I GCAGC 3 cut(s) 46, 397, 596
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 1 cut(s) 341
CciI TCATGA 2 cut(s) 27, 85
CviAII CATG 2 cut(s) 28, 86
DdeI CTNAG 3 cut(s) 195, 405, 459
DpnI GATC 1 cut(s) 559
DpnII GATC 1 cut(s) 557
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
Eam1104I CTCTTC 4 cut(s) 42, 212, 281, 308
EarI CTCTTC 4 cut(s) 42, 212, 281, 308
Ecl136II GAGCTC 2 cut(s) 52, 390
Eco130I CCWWGG 1 cut(s) 516
Eco24I GRGCYC 3 cut(s) 54, 338, 392
Eco53kI GAGCTC 2 cut(s) 52, 390
EcoICRI GAGCTC 2 cut(s) 52, 390
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 3 cut(s) 54, 338, 392
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 2 cut(s) 31, 89
FaiI YATR 5 cut(s) 29, 87, 352, 354, 614
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 2 cut(s) 27, 85
FauI CCCGC 1 cut(s) 346
FauNDI CATATG 1 cut(s) 352
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 3 cut(s) 60, 411, 585
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 3 cut(s) 54, 338, 392
Fsp4HI GCNGC 3 cut(s) 60, 411, 585
GluI GCNGC 3 cut(s) 60, 411, 585
GsaI CCCAGC 1 cut(s) 549
Hin1II CATG 2 cut(s) 31, 89
HinfI GANTC 3 cut(s) 24, 220, 538
HphI GGTGA 2 cut(s) 544, 605
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 6 cut(s) 28, 44, 86, 283, 479, 555
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 280, 593
HpyCH4V TGCA 2 cut(s) 21, 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 572, 581
HpyF3I CTNAG 3 cut(s) 195, 405, 459
Hsp92II CATG 2 cut(s) 31, 89
Kzo9I GATC 1 cut(s) 557
LguI GCTCTTC 2 cut(s) 42, 281
LmnI GCTCC 3 cut(s) 57, 415, 433
LpnPI CCDG 8 cut(s) 171, 246, 273, 333, 392, 471, 489, 531
Lsp1109I GCAGC 3 cut(s) 46, 397, 596
LweI GCATC 2 cut(s) 169, 350
MaeIII GTNAC 3 cut(s) 274, 445, 593
MalI GATC 1 cut(s) 559
MboI GATC 1 cut(s) 557
MboII GAAGA 8 cut(s) 59, 125, 152, 170, 229, 295, 298, 500
MhlI GDGCHC 3 cut(s) 54, 338, 392
MluCI AATT 4 cut(s) 4, 12, 255, 617
MlyI GAGTC 2 cut(s) 229, 532
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 2 cut(s) 100, 373
MseI TTAA 4 cut(s) 11, 330, 570, 620
MslI CAYNNNNRTG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 3 cut(s) 449, 572, 581
NdeI CATATG 1 cut(s) 352
NdeII GATC 1 cut(s) 557
NlaIII CATG 2 cut(s) 31, 89
NlaIV GGNNCC 2 cut(s) 429, 513
NmuCI GTSAC 3 cut(s) 274, 445, 593
PagI TCATGA 2 cut(s) 27, 85
PciSI GCTCTTC 2 cut(s) 42, 281
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 126
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 3 cut(s) 61, 412, 586
PleI GAGTC 2 cut(s) 228, 532
PpsI GAGTC 2 cut(s) 228, 532
Psp124BI GAGCTC 2 cut(s) 54, 392
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 429, 513
RseI CAYNNNNRTG 1 cut(s) 90
SacI GAGCTC 2 cut(s) 54, 392
SapI GCTCTTC 2 cut(s) 42, 281
SaqAI TTAA 4 cut(s) 11, 330, 570, 620
SatI GCNGC 3 cut(s) 60, 411, 585
Sau3AI GATC 1 cut(s) 557
SchI GAGTC 2 cut(s) 229, 532
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 3 cut(s) 54, 338, 392
SetI ASST 5 cut(s) 54, 194, 265, 392, 547
SfaNI GCATC 2 cut(s) 169, 350
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 4 cut(s) 42, 385, 477, 540
SmoI CTYRAG 4 cut(s) 42, 385, 477, 540
Sse9I AATT 4 cut(s) 4, 12, 255, 617
SsiI CCGC 2 cut(s) 339, 413
SspI AATATT 1 cut(s) 298
SstI GAGCTC 2 cut(s) 54, 392
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 2 cut(s) 280, 593
TaqI TCGA 2 cut(s) 69, 105
TasI AATT 4 cut(s) 4, 12, 255, 617
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 4 cut(s) 11, 330, 570, 620
Tru9I TTAA 4 cut(s) 11, 330, 570, 620
TseFI GTSAC 3 cut(s) 274, 445, 593
TseI GCWGC 3 cut(s) 59, 410, 584
Tsp45I GTSAC 3 cut(s) 274, 445, 593
TspDTI ATGAA 6 cut(s) 17, 74, 153, 171, 263, 501
XapI RAATTY 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.