Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011752

Physical Location & Seq

Genomic Coordinates Forward (+)

16960604 .. 16962914

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG097100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGATATAAGATTTGAGATAGATGGTAATATGATACTTTTTTTTTCTTGGCAGCCTGATCAGCCTACGGTTGAAGAGGAAGATGACGATGATGAAGATGAAGACGACGATGATGACAAGGATGACGATGAAGTCGAGGGACAAGATGGGGAAGCGAGTGGCAGGTCAAAGCAAAGTAGAAGTGAAAAGAAAAGCCGCAAAGCAATGCTGAAGCTAGGAATGAAATCTATTCCAGGAGTTAGCCGGGTCACAGTAAAAAAGAGCAAGAATATCTTATTTGTGATATCCAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTATGTTATCTTTGGTGAGGCAAAGATTGAGGATTTGAGCTCACAACTGCAGACTCAGGCTGCAGAGCAGTTTAAAGCTCCTGATCTCAGTCATGTGATTTCCAAACCAGAGACCTCTGCCATAGCCCAGGACGATGAAGATGTAGATGAGACCGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTATCTAGATCAAAGGCTGTTAAGGCACTGAAGGCTGCTGAGGGAGACATTGTTTCTGCTATCATGGAACTTACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

200

Amino Acids

22.09

Weight (kDa)

4.32

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	62 - 117	1.1e-22	NAC domain
UBA_HYPK	PF19026	160 - 199	1.6e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12390 AT5G13850
fragaria_vesca	FvH4_7g04351
malus_domestica	MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica	Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis	pycom03g14650 pycom11g18620
rosa_chinensis	RchiOBHm_Chr1g0329361
rosa_laevigata	RLG00000029899
rosa_multiflora	Rmu_sc0001359.1_g000007
rosa_roxburghii	Rroxscaffold_4G00321180
rosa_rugosa	Rorug01G0078800
rosa_samantha	Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana	Rw1G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	153
AciI	CCGC	1 cut(s)	196
AcuI	CTGAAG	3 cut(s)	230, 300, 572
AgsI	TTSAA	2 cut(s)	74, 304
AjnI	CCWGG	2 cut(s)	232, 450
AluBI	AGCT	3 cut(s)	214, 363, 401
AluI	AGCT	3 cut(s)	214, 363, 401
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	3 cut(s)	428, 467, 561
ApeKI	GCWGC	3 cut(s)	52, 383, 557
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	350, 517
BanII	GRGCYC	3 cut(s)	311, 365, 489
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	365
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	64, 370, 544
BccI	CCATC	2 cut(s)	17, 140
BciT130I	CCWGG	2 cut(s)	234, 452
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	3 cut(s)	428, 467, 561
BfaI	CTAG	2 cut(s)	215, 528
BfmI	CTRYAG	2 cut(s)	371, 384
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	4 cut(s)	53, 196, 384, 558
BlsI	GCNGC	4 cut(s)	54, 197, 385, 559
Bme1390I	CCNGG	3 cut(s)	234, 245, 452
BmrFI	CCNGG	3 cut(s)	234, 245, 452
BpiI	GAAGAC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	245
BsaI	GGTCTC	2 cut(s)	428, 467
BsaJI	CCNNGG	2 cut(s)	450, 489
BsaWI	WCCGGW	2 cut(s)	292, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	234, 452
BseDI	CCNNGG	2 cut(s)	450, 489
BseGI	GGATG	2 cut(s)	127, 301
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	392, 424, 552
BseXI	GCAGC	3 cut(s)	64, 370, 544
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	3 cut(s)	244, 293, 477
BslFI	GGGAC	1 cut(s)	153
BsmAI	GTCTC	3 cut(s)	428, 467, 561
BsmFI	GGGAC	1 cut(s)	153
Bso31I	GGTCTC	2 cut(s)	428, 467
Bsp1286I	GDGCHC	3 cut(s)	311, 365, 489
Bsp143I	GATC	3 cut(s)	58, 406, 530
BspACI	CCGC	1 cut(s)	196
BspCNI	CTCAG	3 cut(s)	391, 423, 553
BspMAI	CTGCAG	2 cut(s)	375, 388
BspMI	ACCTGC	1 cut(s)	153
BspTNI	GGTCTC	2 cut(s)	428, 467
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	450, 489
BssMI	GATC	3 cut(s)	58, 406, 530
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	234, 452
Bst4CI	ACNGT	2 cut(s)	70, 253
Bst6I	CTCTTC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	378, 410, 561
BstF5I	GGATG	2 cut(s)	127, 301
BstKTI	GATC	3 cut(s)	61, 409, 533
BstMAI	GTCTC	3 cut(s)	428, 467, 561
BstMBI	GATC	3 cut(s)	58, 406, 530
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 545, 554
BstNI	CCWGG	2 cut(s)	234, 452
BstSCI	CCNGG	3 cut(s)	232, 243, 450
BstSFI	CTRYAG	2 cut(s)	371, 384
BstV1I	GCAGC	3 cut(s)	64, 370, 544
BstV2I	GAAGAC	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	127, 301
BtsIMutI	CAGTG	1 cut(s)	548
BveI	ACCTGC	1 cut(s)	153
CviAII	CATG	2 cut(s)	416, 586
DdeI	CTNAG	3 cut(s)	378, 410, 561
DpnI	GATC	3 cut(s)	60, 408, 532
DpnII	GATC	3 cut(s)	58, 406, 530
DraI	TTTAAA	1 cut(s)	397
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	3 cut(s)	311, 365, 489
Eco31I	GGTCTC	2 cut(s)	428, 467
Eco32I	GATATC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	363
Eco57I	CTGAAG	3 cut(s)	230, 300, 572
EcoICRI	GAGCTC	1 cut(s)	363
EcoRII	CCWGG	2 cut(s)	232, 450
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	489
EcoT38I	GRGCYC	3 cut(s)	311, 365, 489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	2 cut(s)	419, 589
FaiI	YATR	6 cut(s)	8, 32, 327, 417, 446, 587
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	2 cut(s)	415, 585
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	4 cut(s)	53, 196, 384, 558
FokI	GGATG	2 cut(s)	134, 308
FriOI	GRGCYC	3 cut(s)	311, 365, 489
Fsp4HI	GCNGC	4 cut(s)	53, 196, 384, 558
FspBI	CTAG	2 cut(s)	215, 528
GluI	GCNGC	4 cut(s)	53, 196, 384, 558
HapII	CCGG	3 cut(s)	244, 293, 477
Hin1II	CATG	2 cut(s)	419, 589
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	3 cut(s)	244, 293, 477
HphI	GGTGA	2 cut(s)	350, 517
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	3 cut(s)	304, 404, 528
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	2 cut(s)	70, 253
HpyCH4V	TGCA	2 cut(s)	373, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 545, 554
HpyF3I	CTNAG	3 cut(s)	378, 410, 561
Hsp92II	CATG	2 cut(s)	419, 589
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	58, 406, 530
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	3 cut(s)	64, 370, 544
MaeI	CTAG	2 cut(s)	215, 528
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	3 cut(s)	60, 408, 532
MboI	GATC	3 cut(s)	58, 406, 530
MboII	GAAGA	5 cut(s)	86, 92, 107, 113, 473
MhlI	GDGCHC	3 cut(s)	311, 365, 489
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	6 cut(s)	70, 130, 334, 346, 448, 556
MseI	TTAA	2 cut(s)	396, 543
MspI	CCGG	3 cut(s)	244, 293, 477
MspR9I	CCNGG	3 cut(s)	234, 245, 452
MvaI	CCWGG	2 cut(s)	234, 452
MwoI	GCNNNNNNNGC	3 cut(s)	61, 545, 554
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	3 cut(s)	58, 406, 530
NlaIII	CATG	2 cut(s)	419, 589
NmuCI	GTSAC	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	54, 197, 385, 559
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	232, 450
PspGI	CCWGG	2 cut(s)	232, 450
PstI	CTGCAG	2 cut(s)	375, 388
SacI	GAGCTC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	396, 543
SatI	GCNGC	4 cut(s)	53, 196, 384, 558
Sau3AI	GATC	3 cut(s)	58, 406, 530
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	3 cut(s)	234, 245, 452
SduI	GDGCHC	3 cut(s)	311, 365, 489
SetI	ASST	6 cut(s)	167, 216, 326, 365, 403, 440
SfcI	CTRYAG	2 cut(s)	371, 384
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	2 cut(s)	215, 528
SstI	GAGCTC	1 cut(s)	365
StyD4I	CCNGG	3 cut(s)	232, 243, 450
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	70, 253
TaqI	TCGA	1 cut(s)	135
TauI	GCSGC	1 cut(s)	198
Tru1I	TTAA	2 cut(s)	396, 543
Tru9I	TTAA	2 cut(s)	396, 543
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	52, 383, 557
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	5 cut(s)	108, 114, 144, 236, 474
TspRI	CASTG	1 cut(s)	555
XbaI	TCTAGA	1 cut(s)	527
XspI	CTAG	2 cut(s)	215, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.