Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011752

Physical Location & Seq

Genomic Coordinates Forward (+)

12051324 .. 12052726

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG077700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATGTAAGATTTGAGATAGATGGACAAGATGGGGAAGCGAGTGGCAGGTCAAAGCAAAGTAGAAGTGAAAAGAAAAGCCGCAAAGCAATGCTGAAGCTAGGAATGAAATCTATTCCAGGAGTTAGCCGGGTCACAGTAAAAAAGAGCAAGAATATCTTATTTGTGATATCCAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTATGTTATCTTTGGTGAGGCAAAGATTGAGGATTTGAGCTCACAACTGCAGACTCAGGCTGCAGAGCAGTTTAAAGCTCCTGATCTCAGTCATGTGATTTCCAAACCAGAGACCTCGGCCATAGCCCAGGACGATGAAGATGTAGATGAGACCGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTATCTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCCGAGGGAGACATTGTTTCTGCTATCATGGAACTTACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

162

Amino Acids

17.59

Weight (kDa)

5.57

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	24 - 79	7.4e-23	NAC domain
UBA_HYPK	PF19026	122 - 161	1.1e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12390 AT5G13850
fragaria_vesca	FvH4_7g04351
malus_domestica	MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica	Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis	pycom03g14650 pycom11g18620
rosa_chinensis	RchiOBHm_Chr1g0329361
rosa_laevigata	RLG00000029899
rosa_multiflora	Rmu_sc0001359.1_g000007
rosa_roxburghii	Rroxscaffold_4G00321180
rosa_rugosa	Rorug01G0078800
rosa_samantha	Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana	Rw1G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	327
AcuI	CTGAAG	3 cut(s)	116, 186, 458
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	118, 336
AluBI	AGCT	3 cut(s)	100, 249, 287
AluI	AGCT	3 cut(s)	100, 249, 287
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	3 cut(s)	314, 353, 447
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	269, 443
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	236, 403
BanII	GRGCYC	3 cut(s)	197, 251, 375
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	256, 430
BccI	CCATC	2 cut(s)	17, 26
BciT130I	CCWGG	2 cut(s)	120, 338
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	3 cut(s)	314, 353, 447
BfaI	CTAG	2 cut(s)	101, 414
BfmI	CTRYAG	2 cut(s)	257, 270
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	3 cut(s)	82, 270, 444
BlsI	GCNGC	3 cut(s)	83, 271, 445
Bme1390I	CCNGG	3 cut(s)	120, 131, 338
BmrFI	CCNGG	3 cut(s)	120, 131, 338
BpuMI	CCSGG	1 cut(s)	131
BsaI	GGTCTC	2 cut(s)	314, 353
BsaJI	CCNNGG	4 cut(s)	324, 336, 375, 447
BsaWI	WCCGGW	2 cut(s)	178, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	120, 338
BseDI	CCNNGG	4 cut(s)	324, 336, 375, 447
BseGI	GGATG	2 cut(s)	10, 187
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	278, 310
BseXI	GCAGC	2 cut(s)	256, 430
BshFI	GGCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	3 cut(s)	130, 179, 363
BsmAI	GTCTC	3 cut(s)	314, 353, 447
BsnI	GGCC	1 cut(s)	329
Bso31I	GGTCTC	2 cut(s)	314, 353
Bsp1286I	GDGCHC	3 cut(s)	197, 251, 375
Bsp143I	GATC	2 cut(s)	292, 416
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	2 cut(s)	277, 309
BspMAI	CTGCAG	2 cut(s)	261, 274
BspMI	ACCTGC	1 cut(s)	39
BspTNI	GGTCTC	2 cut(s)	314, 353
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	4 cut(s)	324, 336, 375, 447
BssMI	GATC	2 cut(s)	292, 416
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	120, 338
Bst4CI	ACNGT	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	264, 296
BstF5I	GGATG	2 cut(s)	10, 187
BstKTI	GATC	2 cut(s)	295, 419
BstMAI	GTCTC	3 cut(s)	314, 353, 447
BstMBI	GATC	2 cut(s)	292, 416
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 440
BstNI	CCWGG	2 cut(s)	120, 338
BstSCI	CCNGG	3 cut(s)	118, 129, 336
BstSFI	CTRYAG	2 cut(s)	257, 270
BstV1I	GCAGC	2 cut(s)	256, 430
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	10, 187
BtsIMutI	CAGTG	1 cut(s)	434
BveI	ACCTGC	1 cut(s)	39
CviAII	CATG	2 cut(s)	302, 472
DdeI	CTNAG	2 cut(s)	264, 296
DpnI	GATC	2 cut(s)	294, 418
DpnII	GATC	2 cut(s)	292, 416
DraI	TTTAAA	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	3 cut(s)	197, 251, 375
Eco31I	GGTCTC	2 cut(s)	314, 353
Eco32I	GATATC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	249
Eco57I	CTGAAG	3 cut(s)	116, 186, 458
EcoICRI	GAGCTC	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	118, 336
EcoRV	GATATC	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	3 cut(s)	197, 251, 375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	2 cut(s)	305, 475
FaiI	YATR	4 cut(s)	213, 303, 332, 473
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	2 cut(s)	301, 471
Fnu4HI	GCNGC	3 cut(s)	82, 270, 444
FokI	GGATG	2 cut(s)	17, 194
FriOI	GRGCYC	3 cut(s)	197, 251, 375
Fsp4HI	GCNGC	3 cut(s)	82, 270, 444
FspBI	CTAG	2 cut(s)	101, 414
GluI	GCNGC	3 cut(s)	82, 270, 444
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	3 cut(s)	130, 179, 363
Hin1II	CATG	2 cut(s)	305, 475
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	3 cut(s)	130, 179, 363
HphI	GGTGA	2 cut(s)	236, 403
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	3 cut(s)	190, 290, 414
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	259, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 440
HpyF3I	CTNAG	2 cut(s)	264, 296
Hsp92II	CATG	2 cut(s)	305, 475
Kzo9I	GATC	2 cut(s)	292, 416
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	256, 430
MaeI	CTAG	2 cut(s)	101, 414
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	294, 418
MboI	GATC	2 cut(s)	292, 416
MboII	GAAGA	1 cut(s)	359
MhlI	GDGCHC	3 cut(s)	197, 251, 375
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	4 cut(s)	220, 232, 334, 442
MseI	TTAA	1 cut(s)	282
MspI	CCGG	3 cut(s)	130, 179, 363
MspR9I	CCNGG	3 cut(s)	120, 131, 338
MvaI	CCWGG	2 cut(s)	120, 338
MwoI	GCNNNNNNNGC	2 cut(s)	431, 440
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	292, 416
NlaIII	CATG	2 cut(s)	305, 475
NmeAIII	GCCGAG	2 cut(s)	305, 472
NmuCI	GTSAC	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	83, 271, 445
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	118, 336
PspGI	CCWGG	2 cut(s)	118, 336
PstI	CTGCAG	2 cut(s)	261, 274
SacI	GAGCTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	3 cut(s)	82, 270, 444
Sau3AI	GATC	2 cut(s)	292, 416
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	3 cut(s)	120, 131, 338
SduI	GDGCHC	3 cut(s)	197, 251, 375
SetI	ASST	6 cut(s)	53, 102, 212, 251, 289, 326
SfcI	CTRYAG	2 cut(s)	257, 270
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	2 cut(s)	101, 414
SstI	GAGCTC	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	118, 129, 336
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	139
TauI	GCSGC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	269, 443
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	122, 360
TspRI	CASTG	1 cut(s)	441
XbaI	TCTAGA	1 cut(s)	413
XspI	CTAG	2 cut(s)	101, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.