Rorug01G0078800
NAC Family

Nascent polypeptide-associated complex subunit alpha-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
12841646 .. 12843025
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0078800.1

Sequence Viewer

Length: 1005 bp
ATGGTCCAAGAAAAGAAGGTGATCGATGAGGTTTCCGGTTGGCTTAGGCTCTTTGACGACGGATCAGTCGACCGGACATGGACGGGACCCCCTGACGTCAAGTTCATGACAGAGCCAGTCCCACCGCACGTTGAGTTCATCGACGGAGTTGCGACAAAAGACATGGTCATCGATGAAACGTCCGGCCTTCGAGTTCGAATTTACTTACCTGAGAGAAAGCCGGAGGATTGTGAGAGTCTGCCCATATTTCTCCACTTCCATGGAGGCGGCTTTTGCATTAGTCAAGCAGATTGGTACATGTACTACCACATGTACACAAACCTCGCACGTGCAGCCAACGCCATATGCGTCTCCGTCTATCTACGCCTCGCACCGGAGCACCGTCTCCCGGCTCCGATCGACGATGGCTTCTCTGCTCTCCTCTGGCTCCGGTCCCTGGCTCGAGGTGATTCATATGAACCATGGTTCAACGACAATGCAGACTTTAACCGTGTTTACCTCCTGGGGGATAGCACAGGAGGAAACATAGTCCATGAAGTGGCTGCAAGAGCAGGGAAGCTGGATTTGAGTCCGGCGAAATTATCCGGCGGGATTCTTATCCACCCTGGTTTTGTCCGGTCATCGAGGAGCAGGTCAGAGCTGGAACAGCCACAGTCACCTATGCTTACTCTAGACATGGTGGACAAGTTCCTGAGCTTTGCACTGCCGGTGGGGTCCACCAAGGACCATCCGGTTACGTGTCCGATGGGTTCCGGCGCACCACCGTTGGAAAGTCTGCAGCTGCCGCGGTTCCTTGTGTGCGTGGCAGAGAGAGACATCATGGTGGACACTGAGATGGAGTACTATGAGGCCATGAAGAAGGCTGGTAAGAATGTGGAGCTCCTGATTAGCACTGGGGTGAGTCACAGCTTTTATCTTAACAAGATTGCTGTGGACATGGATCCGCAAACGGAAGCGCAAACTGAAATCCTAATTTCAAGAATCAAAGAGTTCGTCAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

334

Amino Acids

37.4

Weight (kDa)

5.1

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 67 - 178 1.1e-06 BD-FAE
Abhydrolase_3 PF07859 84 - 305 4.3e-52 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011752)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 621
AccB7I CCANNNNNTGG 1 cut(s) 538
AccI GTMKAC 1 cut(s) 69
AccII CGCG 1 cut(s) 787
AciI CCGC 6 cut(s) 125, 267, 588, 785, 787, 944
AclWI GGATC 3 cut(s) 70, 935, 948
AcsI RAATTY 1 cut(s) 198
AcvI CACGTG 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 4 cut(s) 296, 302, 314, 842
AfiI CCNNNNNNNGG 5 cut(s) 373, 388, 436, 505, 538
AflIII ACRYGT 3 cut(s) 297, 309, 737
AgsI TTSAA 2 cut(s) 469, 978
AjnI CCWGG 3 cut(s) 435, 501, 604
AleI CACNNNNGTG 1 cut(s) 896
AluBI AGCT 6 cut(s) 559, 640, 696, 781, 880, 909
AluI AGCT 6 cut(s) 559, 640, 696, 781, 880, 909
Alw21I GWGCWC 2 cut(s) 381, 882
Alw26I GTCTC 3 cut(s) 355, 389, 807
AlwI GGATC 3 cut(s) 70, 935, 948
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 2 cut(s) 184, 849
ApeKI GCWGC 4 cut(s) 332, 542, 778, 781
ApoI RAATTY 1 cut(s) 198
ArsI GACNNNNNNTTYG 1 cut(s) 978
AspLEI GCGC 2 cut(s) 758, 958
AspS9I GGNCC 5 cut(s) 4, 86, 432, 714, 724
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 4 cut(s) 31, 458, 648, 910
AsuII TTCGAA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 5 cut(s) 4, 86, 432, 714, 724
BamHI GGATCC 1 cut(s) 940
BanII GRGCYC 1 cut(s) 882
BbrPI CACGTG 1 cut(s) 329
Bbv12I GWGCWC 2 cut(s) 381, 882
BbvI GCAGC 4 cut(s) 344, 529, 768, 790
BccI CCATC 4 cut(s) 398, 735, 739, 829
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 3 cut(s) 437, 503, 606
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 3 cut(s) 355, 389, 807
BfaI CTAG 1 cut(s) 671
BfmI CTRYAG 1 cut(s) 776
BfuAI ACCTGC 1 cut(s) 621
BisI GCNGC 6 cut(s) 268, 333, 543, 779, 782, 785
BlsI GCNGC 6 cut(s) 269, 334, 544, 780, 783, 786
BmcAI AGTACT 1 cut(s) 842
Bme1390I CCNGG 4 cut(s) 389, 437, 503, 606
Bme18I GGWCC 5 cut(s) 4, 86, 432, 714, 724
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 5 cut(s) 4, 86, 432, 714, 724
BmiI GGNNCC 9 cut(s) 87, 88, 393, 428, 434, 715, 751, 791, 942
BmrFI CCNGG 4 cut(s) 389, 437, 503, 606
BmrI ACTGGG 1 cut(s) 903
BmuI ACTGGG 1 cut(s) 903
Bpu10I CCTNAGC 2 cut(s) 44, 692
Bpu14I TTCGAA 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 389
Bsa29I ATCGAT 2 cut(s) 24, 171
BsaAI YACGTR 2 cut(s) 329, 738
BsaBI GATNNNNATC 1 cut(s) 596
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 7 cut(s) 259, 435, 461, 502, 604, 720, 785
BsaWI WCCGGW 6 cut(s) 35, 72, 373, 429, 615, 730
Bsc4I CCNNNNNNNGG 5 cut(s) 373, 388, 436, 505, 538
Bse118I RCCGGY 1 cut(s) 706
Bse1I ACTGG 2 cut(s) 116, 898
Bse8I GATNNNNATC 1 cut(s) 596
BseBI CCWGG 3 cut(s) 437, 503, 606
BseCI ATCGAT 2 cut(s) 24, 171
BseDI CCNNGG 7 cut(s) 259, 435, 461, 502, 604, 720, 785
BseGI GGATG 1 cut(s) 727
BseJI GATNNNNATC 1 cut(s) 596
BseLI CCNNNNNNNGG 5 cut(s) 373, 388, 436, 505, 538
BseMII CTCAG 3 cut(s) 201, 683, 822
BseNI ACTGG 2 cut(s) 116, 898
BseRI GAGGAG 2 cut(s) 410, 640
BseXI GCAGC 4 cut(s) 344, 529, 768, 790
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 787
Bsh1285I CGRYCG 2 cut(s) 73, 399
BshFI GGCC 2 cut(s) 186, 851
BshVI ATCGAT 2 cut(s) 24, 171
BsiEI CGRYCG 2 cut(s) 73, 399
BsiHKAI GWGCWC 2 cut(s) 381, 882
BsiHKCI CYCGRG 1 cut(s) 441
BslFI GGGAC 3 cut(s) 99, 104, 418
BslI CCNNNNNNNGG 5 cut(s) 373, 388, 436, 505, 538
BsmAI GTCTC 3 cut(s) 355, 389, 807
BsmBI CGTCTC 2 cut(s) 355, 389
BsmFI GGGAC 3 cut(s) 99, 104, 418
BsnI GGCC 2 cut(s) 186, 851
BsoBI CYCGRG 1 cut(s) 441
Bsp119I TTCGAA 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 381, 882
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 4 cut(s) 21, 62, 396, 940
Bsp19I CCATGG 2 cut(s) 259, 461
BspACI CCGC 6 cut(s) 125, 267, 588, 785, 787, 944
BspANI GGCC 2 cut(s) 186, 851
BspCNI CTCAG 3 cut(s) 202, 684, 823
BspDI ATCGAT 2 cut(s) 24, 171
BspFNI CGCG 1 cut(s) 787
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 9 cut(s) 87, 88, 393, 428, 434, 715, 751, 791, 942
BspMAI CTGCAG 1 cut(s) 780
BspMI ACCTGC 1 cut(s) 621
BspPI GGATC 3 cut(s) 70, 935, 948
BspT104I TTCGAA 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 706
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 2 cut(s) 116, 898
BssAI RCCGGY 1 cut(s) 706
BssECI CCNNGG 7 cut(s) 259, 435, 461, 502, 604, 720, 785
BssMI GATC 4 cut(s) 21, 62, 396, 940
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 3 cut(s) 259, 461, 720
Bst2UI CCWGG 3 cut(s) 437, 503, 606
Bst4CI ACNGT 4 cut(s) 383, 491, 654, 765
BstACI GRCGYC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 312
BstBAI YACGTR 2 cut(s) 329, 738
BstBI TTCGAA 1 cut(s) 196
BstDEI CTNAG 4 cut(s) 44, 210, 692, 831
BstDSI CCRYGG 3 cut(s) 259, 461, 785
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 1 cut(s) 787
BstHHI GCGC 2 cut(s) 758, 958
BstKTI GATC 4 cut(s) 24, 65, 399, 943
BstMAI GTCTC 3 cut(s) 355, 389, 807
BstMBI GATC 4 cut(s) 21, 62, 396, 940
BstMCI CGRYCG 2 cut(s) 73, 399
BstMWI GCNNNNNNNGC 6 cut(s) 273, 332, 338, 548, 646, 784
BstNI CCWGG 3 cut(s) 437, 503, 606
BstNSI RCATGY 2 cut(s) 301, 313
BstSCI CCNGG 4 cut(s) 387, 435, 501, 604
BstSFI CTRYAG 1 cut(s) 776
BstUI CGCG 1 cut(s) 787
BstV1I GCAGC 4 cut(s) 344, 529, 768, 790
BstX2I RGATCY 1 cut(s) 940
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 940
Bsu15I ATCGAT 2 cut(s) 24, 171
BsuRI GGCC 2 cut(s) 186, 851
BsuTUI ATCGAT 2 cut(s) 24, 171
BtgI CCRYGG 3 cut(s) 259, 461, 785
BtsCI GGATG 1 cut(s) 727
BtsI GCAGTG 1 cut(s) 701
BtsIMutI CAGTG 3 cut(s) 701, 828, 891
BveI ACCTGC 1 cut(s) 621
CciI TCATGA 1 cut(s) 105
CfoI GCGC 2 cut(s) 758, 958
Cfr10I RCCGGY 1 cut(s) 706
Cfr13I GGNCC 5 cut(s) 4, 86, 432, 714, 724
Cfr42I CCGCGG 1 cut(s) 788
ClaI ATCGAT 2 cut(s) 24, 171
CseI GACGC 1 cut(s) 337
Csp6I GTAC 4 cut(s) 295, 301, 313, 841
CviQI GTAC 4 cut(s) 295, 301, 313, 841
DdeI CTNAG 4 cut(s) 44, 210, 692, 831
DpnI GATC 4 cut(s) 23, 64, 398, 942
DpnII GATC 4 cut(s) 21, 62, 396, 940
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 3 cut(s) 259, 461, 720
Eco24I GRGCYC 1 cut(s) 882
Eco47I GGWCC 5 cut(s) 4, 86, 432, 714, 724
Eco53kI GAGCTC 1 cut(s) 880
Eco72I CACGTG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 880
EcoO109I RGGNCCY 1 cut(s) 86
EcoRII CCWGG 3 cut(s) 435, 501, 604
EcoT14I CCWWGG 3 cut(s) 259, 461, 720
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 3 cut(s) 259, 461, 720
Esp3I CGTCTC 2 cut(s) 355, 389
FaqI GGGAC 3 cut(s) 99, 104, 418
FauI CCCGC 1 cut(s) 581
FauNDI CATATG 2 cut(s) 344, 454
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 6 cut(s) 268, 333, 543, 779, 782, 785
FokI GGATG 1 cut(s) 714
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 6 cut(s) 268, 333, 543, 779, 782, 785
FspBI CTAG 1 cut(s) 671
GlaI GCGC 2 cut(s) 757, 957
GluI GCNGC 6 cut(s) 268, 333, 543, 779, 782, 785
HaeIII GGCC 2 cut(s) 186, 851
HgaI GACGC 1 cut(s) 337
HhaI GCGC 2 cut(s) 758, 958
Hin1I GRCGYC 1 cut(s) 96
Hin6I GCGC 2 cut(s) 756, 956
HinP1I GCGC 2 cut(s) 756, 956
HincII GTYRAC 2 cut(s) 70, 997
HindII GTYRAC 2 cut(s) 70, 997
HinfI GANTC 6 cut(s) 235, 449, 568, 592, 901, 981
HphI GGTGA 4 cut(s) 31, 458, 648, 910
Hpy166II GTNNAC 8 cut(s) 70, 315, 496, 682, 717, 826, 934, 997
Hpy188I TCNGA 3 cut(s) 396, 637, 744
Hpy188III TCNNGA 5 cut(s) 106, 671, 691, 883, 978
Hpy8I GTNNAC 8 cut(s) 70, 315, 496, 682, 717, 826, 934, 997
Hpy99I CGWCG 3 cut(s) 62, 146, 404
HpyAV CCTTC 3 cut(s) 10, 197, 853
HpyCH4III ACNGT 4 cut(s) 383, 491, 654, 765
HpyCH4IV ACGT 5 cut(s) 96, 129, 179, 328, 737
HpyCH4V TGCA 6 cut(s) 276, 332, 479, 545, 701, 778
HpyF10VI GCNNNNNNNGC 6 cut(s) 273, 332, 338, 548, 646, 784
HpyF3I CTNAG 4 cut(s) 44, 210, 692, 831
HpySE526I ACGT 5 cut(s) 96, 129, 179, 328, 737
Hsp92I GRCGYC 1 cut(s) 96
HspAI GCGC 2 cut(s) 756, 956
KflI GGGWCCC 1 cut(s) 86
KspI CCGCGG 1 cut(s) 788
Kzo9I GATC 4 cut(s) 21, 62, 396, 940
LmnI GCTCC 6 cut(s) 376, 397, 432, 627, 877, 885
Lsp1109I GCAGC 4 cut(s) 344, 529, 768, 790
MaeI CTAG 1 cut(s) 671
MaeII ACGT 5 cut(s) 96, 129, 179, 328, 737
MaeIII GTNAC 3 cut(s) 654, 733, 902
MalI GATC 4 cut(s) 23, 64, 398, 942
MboI GATC 4 cut(s) 21, 62, 396, 940
MboII GAAGA 1 cut(s) 868
MflI RGATCY 1 cut(s) 940
MhlI GDGCHC 2 cut(s) 381, 882
MluCI AATT 4 cut(s) 198, 578, 972, 1000
MlyI GAGTC 3 cut(s) 244, 577, 910
MmeI TCCRAC 1 cut(s) 747
MseI TTAA 3 cut(s) 486, 918, 1003
MslI CAYNNNNRTG 4 cut(s) 258, 821, 833, 896
MspA1I CMGCKG 2 cut(s) 781, 787
MspR9I CCNGG 4 cut(s) 389, 437, 503, 606
MvaI CCWGG 3 cut(s) 437, 503, 606
MvnI CGCG 1 cut(s) 787
MwoI GCNNNNNNNGC 6 cut(s) 273, 332, 338, 548, 646, 784
NciI CCSGG 1 cut(s) 389
NcoI CCATGG 2 cut(s) 259, 461
NdeI CATATG 2 cut(s) 344, 454
NdeII GATC 4 cut(s) 21, 62, 396, 940
NlaIV GGNNCC 9 cut(s) 87, 88, 393, 428, 434, 715, 751, 791, 942
NmuCI GTSAC 2 cut(s) 654, 902
NspI RCATGY 2 cut(s) 301, 313
NspV TTCGAA 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 896
PaeR7I CTCGAG 1 cut(s) 441
PagI TCATGA 1 cut(s) 105
PciI ACATGT 2 cut(s) 297, 309
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 345
PfeI GAWTC 3 cut(s) 449, 592, 981
PflFI GACNNNGTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 538
PkrI GCNGC 6 cut(s) 269, 334, 544, 780, 783, 786
Ple19I CGATCG 1 cut(s) 399
PleI GAGTC 3 cut(s) 243, 576, 909
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 3 cut(s) 243, 576, 909
Ppu21I YACGTR 2 cut(s) 329, 738
PpuMI RGGWCCY 1 cut(s) 86
PscI ACATGT 2 cut(s) 297, 309
Psp124BI GAGCTC 1 cut(s) 882
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 3 cut(s) 435, 501, 604
PspCI CACGTG 1 cut(s) 329
PspGI CCWGG 3 cut(s) 435, 501, 604
PspN4I GGNNCC 9 cut(s) 87, 88, 393, 428, 434, 715, 751, 791, 942
PspPI GGNCC 5 cut(s) 4, 86, 432, 714, 724
PspPPI RGGWCCY 1 cut(s) 86
PspXI VCTCGAGB 1 cut(s) 441
PstI CTGCAG 1 cut(s) 780
PsuI RGATCY 1 cut(s) 940
PsyI GACNNNGTC 1 cut(s) 164
PvuI CGATCG 1 cut(s) 399
PvuII CAGCTG 1 cut(s) 781
RsaI GTAC 4 cut(s) 296, 302, 314, 842
RsaNI GTAC 4 cut(s) 295, 301, 313, 841
RseI CAYNNNNRTG 4 cut(s) 258, 821, 833, 896
SacI GAGCTC 1 cut(s) 882
SacII CCGCGG 1 cut(s) 788
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 3 cut(s) 486, 918, 1003
SatI GCNGC 6 cut(s) 268, 333, 543, 779, 782, 785
Sau3AI GATC 4 cut(s) 21, 62, 396, 940
Sau96I GGNCC 5 cut(s) 4, 86, 432, 714, 724
ScaI AGTACT 1 cut(s) 842
SchI GAGTC 3 cut(s) 244, 577, 910
ScrFI CCNGG 4 cut(s) 389, 437, 503, 606
SduI GDGCHC 2 cut(s) 381, 882
SfcI CTRYAG 1 cut(s) 776
Sfr274I CTCGAG 1 cut(s) 441
Sfr303I CCGCGG 1 cut(s) 788
SfuI TTCGAA 1 cut(s) 196
SgrBI CCGCGG 1 cut(s) 788
SinI GGWCC 5 cut(s) 4, 86, 432, 714, 724
SlaI CTCGAG 1 cut(s) 441
SmiMI CAYNNNNRTG 4 cut(s) 258, 821, 833, 896
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 4 cut(s) 198, 578, 972, 1000
SsiI CCGC 6 cut(s) 125, 267, 588, 785, 787, 944
SspMI CTAG 1 cut(s) 671
SstI GAGCTC 1 cut(s) 882
StyD4I CCNGG 4 cut(s) 387, 435, 501, 604
StyI CCWWGG 3 cut(s) 259, 461, 720
TaaI ACNGT 4 cut(s) 383, 491, 654, 765
TaiI ACGT 5 cut(s) 99, 132, 182, 331, 740
TaqI TCGA 9 cut(s) 24, 69, 141, 171, 190, 196, 399, 442, 623
TasI AATT 4 cut(s) 198, 578, 972, 1000
TatI WGTACW 3 cut(s) 300, 312, 840
TauI GCSGC 2 cut(s) 270, 787
TfiI GAWTC 3 cut(s) 449, 592, 981
Tru1I TTAA 3 cut(s) 486, 918, 1003
Tru9I TTAA 3 cut(s) 486, 918, 1003
TscAI CASTG 3 cut(s) 708, 835, 898
TseFI GTSAC 2 cut(s) 654, 902
TseI GCWGC 4 cut(s) 332, 542, 778, 781
Tsp45I GTSAC 2 cut(s) 654, 902
TspDTI ATGAA 7 cut(s) 94, 127, 189, 441, 471, 549, 869
TspGWI ACGGA 4 cut(s) 75, 159, 343, 965
TspRI CASTG 3 cut(s) 708, 835, 898
Tth111I GACNNNGTC 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 538
VpaK11BI GGWCC 5 cut(s) 4, 86, 432, 714, 724
XapI RAATTY 1 cut(s) 198
XbaI TCTAGA 1 cut(s) 670
XceI RCATGY 2 cut(s) 301, 313
XhoI CTCGAG 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 1 cut(s) 671
ZraI GACGTC 1 cut(s) 97
ZrmI AGTACT 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.