RchiOBHm_Chr1g0329361
NAC Family

Nascent polypeptide-associated complex subunit alpha-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011752
Physical Location & Seq
Forward (+)
18897086 .. 18899220
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55868

Sequence Viewer

Length: 609 bp
ATGACTGCTCAGACTCAGGAAGAACTCCTCGCCGCCCATCTCGAACAGCAAACTATCGATCCTGATCAGCCTACGGTTGAAGAGGAAGATGACGATGATGAAGATGAAGACGACGATGATGACAAGGATGACGATGAAGTCGAGGGACAAGATGGGGAAGCGAGTGGCAGGTCAAAGCAAAGTAGAAGTGAAAAGAAAAGCCGCAAAGCAATGCTGAAGCTAGGAATGAAATCTATTCCAGGAGTTAGCCGGGTCACAGTAAAAAAGAGCAAGAATATCTTATTTGTGATATCCAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTATGTTATCTTTGGTGAGGCAAAGATTGAGGATTTGAGCTCACAACTGCAGACTCAGGCTGCAGAGCAGTTTAAAGCTCCTGATCTCAGTCATGTGATTTCCAAACCAGAGACCTCGGCCATAGCCCAGGACGATGAAGATGTAGATGAGACCGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTATCTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCTGAGGGAGACATTGTTTCTGCTATCATGGAACTTACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAC

Protein Analysis

202

Amino Acids

22.1

Weight (kDa)

4.31

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 64 - 119 1.1e-22 NAC domain
UBA_HYPK PF19026 162 - 201 1.7e-12 HYPK UBA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011752)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12390 AT5G13850
fragaria_vesca FvH4_7g04351
malus_domestica MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis pycom03g14650 pycom11g18620
rosa_chinensis RchiOBHm_Chr1g0329361
rosa_laevigata RLG00000029899
rosa_multiflora Rmu_sc0001359.1_g000007
rosa_roxburghii Rroxscaffold_4G00321180
rosa_rugosa Rorug01G0078800
rosa_samantha Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana Rw1G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 159
AciI CCGC 2 cut(s) 33, 202
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 447
AcuI CTGAAG 3 cut(s) 236, 306, 578
AgsI TTSAA 2 cut(s) 80, 310
AjnI CCWGG 2 cut(s) 238, 456
AluBI AGCT 3 cut(s) 220, 369, 407
AluI AGCT 3 cut(s) 220, 369, 407
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 3 cut(s) 434, 473, 567
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 389, 563
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 356, 523
BanII GRGCYC 3 cut(s) 317, 371, 495
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 371
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 2 cut(s) 376, 550
BccI CCATC 2 cut(s) 45, 146
BciT130I CCWGG 2 cut(s) 240, 458
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 3 cut(s) 434, 473, 567
BfaI CTAG 2 cut(s) 221, 534
BfmI CTRYAG 2 cut(s) 377, 390
BfuAI ACCTGC 1 cut(s) 159
BisI GCNGC 4 cut(s) 33, 202, 390, 564
BlsI GCNGC 4 cut(s) 34, 203, 391, 565
Bme1390I CCNGG 3 cut(s) 240, 251, 458
BmrFI CCNGG 3 cut(s) 240, 251, 458
BpiI GAAGAC 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 63
BsaI GGTCTC 2 cut(s) 434, 473
BsaJI CCNNGG 3 cut(s) 444, 456, 495
BsaWI WCCGGW 2 cut(s) 298, 482
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 240, 458
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 444, 456, 495
BseGI GGATG 2 cut(s) 133, 307
BseJI GATNNNNATC 1 cut(s) 63
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 5 cut(s) 23, 29, 398, 430, 558
BseRI GAGGAG 1 cut(s) 17
BseXI GCAGC 2 cut(s) 376, 550
BshFI GGCC 1 cut(s) 449
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 371
BsiSI CCGG 3 cut(s) 250, 299, 483
BslFI GGGAC 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 434, 473, 567
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 449
Bso31I GGTCTC 2 cut(s) 434, 473
Bsp1286I GDGCHC 3 cut(s) 317, 371, 495
Bsp143I GATC 4 cut(s) 58, 64, 412, 536
BspACI CCGC 2 cut(s) 33, 202
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 5 cut(s) 22, 28, 397, 429, 559
BspDI ATCGAT 1 cut(s) 57
BspMAI CTGCAG 2 cut(s) 381, 394
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 434, 473
BsrDI GCAATG 1 cut(s) 216
BssECI CCNNGG 3 cut(s) 444, 456, 495
BssMI GATC 4 cut(s) 58, 64, 412, 536
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 240, 458
Bst4CI ACNGT 2 cut(s) 76, 259
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 5 cut(s) 9, 15, 384, 416, 567
BstF5I GGATG 2 cut(s) 133, 307
BstKTI GATC 4 cut(s) 61, 67, 415, 539
BstMAI GTCTC 3 cut(s) 434, 473, 567
BstMBI GATC 4 cut(s) 58, 64, 412, 536
BstMWI GCNNNNNNNGC 2 cut(s) 551, 560
BstNI CCWGG 2 cut(s) 240, 458
BstSCI CCNGG 3 cut(s) 238, 249, 456
BstSFI CTRYAG 2 cut(s) 377, 390
BstV1I GCAGC 2 cut(s) 376, 550
BstV2I GAAGAC 1 cut(s) 114
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 449
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 2 cut(s) 133, 307
BtsIMutI CAGTG 1 cut(s) 554
BveI ACCTGC 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 57
CviAII CATG 2 cut(s) 422, 592
DdeI CTNAG 5 cut(s) 9, 15, 384, 416, 567
DpnI GATC 4 cut(s) 60, 66, 414, 538
DpnII GATC 4 cut(s) 58, 64, 412, 536
DraI TTTAAA 1 cut(s) 403
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 3 cut(s) 317, 371, 495
Eco31I GGTCTC 2 cut(s) 434, 473
Eco32I GATATC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 369
Eco57I CTGAAG 3 cut(s) 236, 306, 578
EcoICRI GAGCTC 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 238, 456
EcoRV GATATC 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 495
EcoT38I GRGCYC 3 cut(s) 317, 371, 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 2 cut(s) 425, 595
FaiI YATR 4 cut(s) 333, 423, 452, 593
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 421, 591
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 4 cut(s) 33, 202, 390, 564
FokI GGATG 2 cut(s) 140, 314
FriOI GRGCYC 3 cut(s) 317, 371, 495
Fsp4HI GCNGC 4 cut(s) 33, 202, 390, 564
FspBI CTAG 2 cut(s) 221, 534
GluI GCNGC 4 cut(s) 33, 202, 390, 564
HaeIII GGCC 1 cut(s) 449
HapII CCGG 3 cut(s) 250, 299, 483
Hin1II CATG 2 cut(s) 425, 595
HinfI GANTC 2 cut(s) 13, 382
HpaII CCGG 3 cut(s) 250, 299, 483
HphI GGTGA 2 cut(s) 356, 523
Hpy188I TCNGA 2 cut(s) 12, 325
Hpy188III TCNNGA 6 cut(s) 17, 41, 62, 310, 410, 534
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 2 cut(s) 76, 259
HpyCH4V TGCA 2 cut(s) 379, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 551, 560
HpyF3I CTNAG 5 cut(s) 9, 15, 384, 416, 567
Hsp92II CATG 2 cut(s) 425, 595
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 58, 64, 412, 536
LmnI GCTCC 1 cut(s) 412
Lsp1109I GCAGC 2 cut(s) 376, 550
MaeI CTAG 2 cut(s) 221, 534
MaeIII GTNAC 1 cut(s) 253
MalI GATC 4 cut(s) 60, 66, 414, 538
MboI GATC 4 cut(s) 58, 64, 412, 536
MboII GAAGA 6 cut(s) 32, 92, 98, 113, 119, 479
MhlI GDGCHC 3 cut(s) 317, 371, 495
MlyI GAGTC 2 cut(s) 7, 376
MnlI CCTC 7 cut(s) 38, 76, 136, 340, 352, 454, 562
MseI TTAA 1 cut(s) 402
MspI CCGG 3 cut(s) 250, 299, 483
MspR9I CCNGG 3 cut(s) 240, 251, 458
MvaI CCWGG 2 cut(s) 240, 458
MwoI GCNNNNNNNGC 2 cut(s) 551, 560
NciI CCSGG 1 cut(s) 251
NdeII GATC 4 cut(s) 58, 64, 412, 536
NlaIII CATG 2 cut(s) 425, 595
NmeAIII GCCGAG 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 238
PkrI GCNGC 4 cut(s) 34, 203, 391, 565
PleI GAGTC 2 cut(s) 7, 376
PpsI GAGTC 2 cut(s) 7, 376
Psp124BI GAGCTC 1 cut(s) 371
Psp6I CCWGG 2 cut(s) 238, 456
PspGI CCWGG 2 cut(s) 238, 456
PstI CTGCAG 2 cut(s) 381, 394
SacI GAGCTC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 4 cut(s) 33, 202, 390, 564
Sau3AI GATC 4 cut(s) 58, 64, 412, 536
SchI GAGTC 2 cut(s) 7, 376
ScrFI CCNGG 3 cut(s) 240, 251, 458
SduI GDGCHC 3 cut(s) 317, 371, 495
SetI ASST 6 cut(s) 173, 222, 332, 371, 409, 446
SfcI CTRYAG 2 cut(s) 377, 390
SsiI CCGC 2 cut(s) 33, 202
SspMI CTAG 2 cut(s) 221, 534
SstI GAGCTC 1 cut(s) 371
StyD4I CCNGG 3 cut(s) 238, 249, 456
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 2 cut(s) 76, 259
TaqI TCGA 3 cut(s) 42, 57, 141
TauI GCSGC 2 cut(s) 35, 204
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 2 cut(s) 389, 563
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 5 cut(s) 114, 120, 150, 242, 480
TspRI CASTG 1 cut(s) 561
XbaI TCTAGA 1 cut(s) 533
XspI CTAG 2 cut(s) 221, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.