Prupe.2G049200_v2.0.a1
NAC Family

Nascent polypeptide-associated complex subunit alpha-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011752
Physical Location & Seq
Forward (+)
5659348 .. 5661571
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G049200.1

Sequence Viewer

Length: 615 bp
ATGACTGCTCAGACCCAGGAAGAGCTCCTCGCTGCCCATCTCGAACAGCAAGCCATCGATCCTGATCAGCCAACAGTTGAAGAGGAAGATGATGACGACGACGACGACGAAGATGACGATGATGACAAGGACGATGATGAAGCCGAGGGACAACAAGATGGAGAGGCAAGTGGGAGGTCAAAGCAAAGCAGAAGTGAAAAGAAAAGCCGCAAAGCAATGTTGAAGCTTGGAATGAAGCCCATTCCAGGTGTTAGCCGGGTTACAGTCAAAAAGAGCAAGAATATCTTGTTTGTGATATCCAAACCGGATGTTTTCAAGAGTCCAACTTCAGATACATATGTTATCTTTGGTGAGGCAAAGATTGAGGACTTGAGCTCGCAACTACAGACTCAGGCTGCTGAGCAGTTTAAGGCTCCTGATCTCAGTCATGTGATCTCCAAACCTGAGACCTCGACCCTTGCTCAGGATGATGAAGATGTAGATGAGACTGGAGTGGAGCCCAAGGACATTGAGTTGGTGATGACACAGGCAGGAGTATCAAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCAGATGGAGACATAGTTTCTGCAATTATGGAGCTTACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAC

Protein Analysis

205

Amino Acids

22.3

Weight (kDa)

4.27

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011752)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12390 AT5G13850
fragaria_vesca FvH4_7g04351
malus_domestica MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis pycom03g14650 pycom11g18620
rosa_chinensis RchiOBHm_Chr1g0329361
rosa_laevigata RLG00000029899
rosa_multiflora Rmu_sc0001359.1_g000007
rosa_roxburghii Rroxscaffold_4G00321180
rosa_rugosa Rorug01G0078800
rosa_samantha Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana Rw1G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 208
AclWI GGATC 1 cut(s) 53
AcuI CTGAAG 2 cut(s) 312, 584
AfiI CCNNNNNNNGG 2 cut(s) 245, 463
AgsI TTSAA 3 cut(s) 80, 223, 316
AjnI CCWGG 2 cut(s) 15, 244
AluBI AGCT 4 cut(s) 25, 226, 375, 604
AluI AGCT 4 cut(s) 25, 226, 375, 604
Alw21I GWGCWC 2 cut(s) 27, 377
Alw26I GTCTC 3 cut(s) 440, 479, 573
AlwI GGATC 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 32, 395, 569
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 362, 529
BaeI ACNNNNGTAYC 2 cut(s) 324, 357
BanII GRGCYC 3 cut(s) 27, 377, 501
Bbv12I GWGCWC 2 cut(s) 27, 377
BbvI GCAGC 3 cut(s) 19, 382, 556
BccI CCATC 4 cut(s) 45, 62, 152, 569
BciT130I CCWGG 2 cut(s) 17, 246
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 3 cut(s) 440, 479, 573
BfmI CTRYAG 2 cut(s) 383, 570
BisI GCNGC 4 cut(s) 33, 208, 396, 570
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 4 cut(s) 34, 209, 397, 571
Bme1390I CCNGG 3 cut(s) 17, 246, 257
BmiI GGNNCC 2 cut(s) 414, 498
BmrFI CCNGG 3 cut(s) 17, 246, 257
BpmI CTGGAG 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 3 cut(s) 15, 144, 501
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 463
Bse1I ACTGG 1 cut(s) 493
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 17, 246
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 15, 144, 501
BseGI GGATG 2 cut(s) 313, 472
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 245, 463
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 6 cut(s) 23, 390, 404, 435, 436, 476
BseNI ACTGG 1 cut(s) 493
BseRI GAGGAG 1 cut(s) 17
BseXI GCAGC 3 cut(s) 19, 382, 556
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 27, 377
BsiSI CCGG 2 cut(s) 256, 305
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 245, 463
BsmAI GTCTC 3 cut(s) 440, 479, 573
BsmFI GGGAC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 440
Bsp1286I GDGCHC 3 cut(s) 27, 377, 501
Bsp143I GATC 5 cut(s) 58, 64, 418, 432, 542
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 1 cut(s) 208
BspCNI CTCAG 6 cut(s) 22, 391, 403, 435, 436, 475
BspDI ATCGAT 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 414, 498
BspMAI CTGCAG 1 cut(s) 574
BspPI GGATC 1 cut(s) 53
BspQI GCTCTTC 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 493
BssECI CCNNGG 3 cut(s) 15, 144, 501
BssMI GATC 5 cut(s) 58, 64, 418, 432, 542
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 17, 246
Bst4CI ACNGT 2 cut(s) 76, 265
Bst6I CTCTTC 2 cut(s) 15, 75
BstC8I GCNNGC 2 cut(s) 51, 377
BstDEI CTNAG 6 cut(s) 9, 390, 399, 422, 444, 462
BstENI CCTNNNNNAGG 1 cut(s) 461
BstF5I GGATG 2 cut(s) 313, 472
BstKTI GATC 5 cut(s) 61, 67, 421, 435, 545
BstMAI GTCTC 3 cut(s) 440, 479, 573
BstMBI GATC 5 cut(s) 58, 64, 418, 432, 542
BstMWI GCNNNNNNNGC 2 cut(s) 557, 566
BstNI CCWGG 2 cut(s) 17, 246
BstSCI CCNGG 3 cut(s) 15, 244, 255
BstSFI CTRYAG 2 cut(s) 383, 570
BstV1I GCAGC 3 cut(s) 19, 382, 556
Bsu15I ATCGAT 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 2 cut(s) 313, 472
BtsIMutI CAGTG 1 cut(s) 560
Cac8I GCNNGC 2 cut(s) 51, 377
ClaI ATCGAT 1 cut(s) 57
CviAII CATG 1 cut(s) 428
DdeI CTNAG 6 cut(s) 9, 390, 399, 422, 444, 462
DpnI GATC 5 cut(s) 60, 66, 420, 434, 544
DpnII GATC 5 cut(s) 58, 64, 418, 432, 542
Eam1104I CTCTTC 2 cut(s) 15, 75
EarI CTCTTC 2 cut(s) 15, 75
Ecl136II GAGCTC 2 cut(s) 25, 375
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 3 cut(s) 27, 377, 501
Eco31I GGTCTC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 297
Eco53kI GAGCTC 2 cut(s) 25, 375
Eco57I CTGAAG 2 cut(s) 312, 584
EcoICRI GAGCTC 2 cut(s) 25, 375
EcoNI CCTNNNNNAGG 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 15, 244
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 3 cut(s) 27, 377, 501
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 1 cut(s) 431
FaiI YATR 5 cut(s) 337, 339, 429, 584, 599
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 162
FatI CATG 1 cut(s) 427
FauNDI CATATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 4 cut(s) 33, 208, 396, 570
FokI GGATG 2 cut(s) 320, 479
FriOI GRGCYC 3 cut(s) 27, 377, 501
Fsp4HI GCNGC 4 cut(s) 33, 208, 396, 570
GluI GCNGC 4 cut(s) 33, 208, 396, 570
GsuI CTGGAG 1 cut(s) 510
HapII CCGG 2 cut(s) 256, 305
Hin1II CATG 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 2 cut(s) 319, 388
HpaII CCGG 2 cut(s) 256, 305
HphI GGTGA 2 cut(s) 362, 529
Hpy188I TCNGA 2 cut(s) 12, 331
Hpy188III TCNNGA 6 cut(s) 41, 62, 316, 416, 464, 540
Hpy99I CGWCG 4 cut(s) 101, 104, 107, 110
HpyAV CCTTC 1 cut(s) 559
HpyCH4III ACNGT 2 cut(s) 76, 265
HpyCH4V TGCA 2 cut(s) 572, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 557, 566
HpyF3I CTNAG 6 cut(s) 9, 390, 399, 422, 444, 462
Hsp92II CATG 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 5 cut(s) 58, 64, 418, 432, 542
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 4 cut(s) 30, 418, 496, 601
Lsp1109I GCAGC 3 cut(s) 19, 382, 556
MaeIII GTNAC 1 cut(s) 259
MalI GATC 5 cut(s) 60, 66, 420, 434, 544
MboI GATC 5 cut(s) 58, 64, 418, 432, 542
MboII GAAGA 5 cut(s) 32, 92, 98, 122, 485
MhlI GDGCHC 3 cut(s) 27, 377, 501
MluCI AATT 1 cut(s) 594
MlyI GAGTC 2 cut(s) 328, 382
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 8 cut(s) 38, 76, 139, 157, 168, 346, 358, 460
MseI TTAA 1 cut(s) 408
MspI CCGG 2 cut(s) 256, 305
MspR9I CCNGG 3 cut(s) 17, 246, 257
MvaI CCWGG 2 cut(s) 17, 246
MwoI GCNNNNNNNGC 2 cut(s) 557, 566
NciI CCSGG 1 cut(s) 257
NdeI CATATG 1 cut(s) 337
NdeII GATC 5 cut(s) 58, 64, 418, 432, 542
NlaIII CATG 1 cut(s) 431
NlaIV GGNNCC 2 cut(s) 414, 498
NmeAIII GCCGAG 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 105, 114
PkrI GCNGC 4 cut(s) 34, 209, 397, 571
PleI GAGTC 2 cut(s) 327, 382
PpsI GAGTC 2 cut(s) 327, 382
Psp124BI GAGCTC 2 cut(s) 27, 377
Psp6I CCWGG 2 cut(s) 15, 244
PspGI CCWGG 2 cut(s) 15, 244
PspN4I GGNNCC 2 cut(s) 414, 498
PstI CTGCAG 1 cut(s) 574
SacI GAGCTC 2 cut(s) 27, 377
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 4 cut(s) 33, 208, 396, 570
Sau3AI GATC 5 cut(s) 58, 64, 418, 432, 542
SchI GAGTC 2 cut(s) 328, 382
ScrFI CCNGG 3 cut(s) 17, 246, 257
SduI GDGCHC 3 cut(s) 27, 377, 501
SetI ASST 8 cut(s) 27, 179, 228, 250, 377, 445, 452, 606
SfcI CTRYAG 2 cut(s) 383, 570
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 1 cut(s) 594
SsiI CCGC 1 cut(s) 208
SstI GAGCTC 2 cut(s) 27, 377
StyD4I CCNGG 3 cut(s) 15, 244, 255
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 2 cut(s) 76, 265
TaqI TCGA 3 cut(s) 42, 57, 452
TasI AATT 1 cut(s) 594
TauI GCSGC 1 cut(s) 210
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 1 cut(s) 567
TseI GCWGC 3 cut(s) 32, 395, 569
TspDTI ATGAA 3 cut(s) 153, 248, 486
TspRI CASTG 1 cut(s) 567
XagI CCTNNNNNAGG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.