RLG00000029899
NAC Family

Nascent polypeptide-associated complex subunit alpha-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011752
Physical Location & Seq
Reverse (-)
51030345 .. 51032214
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029899

Sequence Viewer

Length: 558 bp
ATGACTGCTCAGACTCAGGAAGAACTCCTCGCCGCCCATCTCGAACAGCAAACCATCGATCCACAATACTTGATATTTGATGGTTTTATATGTCATGGTGAAAATAACAAGCAGAATGAAAGATCACAAAGTAGAAGTGAAAAAAAAAGCCGCAAAGCAATGCTGAAGCTAGGAATGAAATCTATTCCAGGAGTTAGCCGGGTTACAGTCAAAAAGAGCAAGAATATCTTATTTGTGATATCCAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTATGTTATCTTTGGTGAGGCAAAGATTGAGGATTTGAGCTCGCAACTGCAGACTCAGGCTGCAGAGCAGTTTAAAGCTCCTGATCTCAGTCATGTGATTTCCAAACCAGAGACCTCGGCCATAGCCCAGGACGATGAAGATGTAGATGAGACCGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTATCTAGATCTAAGGCTGTAAAGGCACTGAAGGCTGCTGATGGAGACATTGTTTCTGCTATCATGGAACTTACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAC

Protein Analysis

186

Amino Acids

20.34

Weight (kDa)

5.3

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 47 - 102 9.6e-23 NAC domain
UBA_HYPK PF19026 145 - 184 6.4e-13 HYPK UBA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011752)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12390 AT5G13850
fragaria_vesca FvH4_7g04351
malus_domestica MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis pycom03g14650 pycom11g18620
rosa_chinensis RchiOBHm_Chr1g0329361
rosa_laevigata RLG00000029899
rosa_multiflora Rmu_sc0001359.1_g000007
rosa_roxburghii Rroxscaffold_4G00321180
rosa_rugosa Rorug01G0078800
rosa_samantha Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana Rw1G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 33, 151
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 396
AcuI CTGAAG 3 cut(s) 185, 255, 527
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 2 cut(s) 187, 405
AluBI AGCT 3 cut(s) 169, 318, 356
AluI AGCT 3 cut(s) 169, 318, 356
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 3 cut(s) 383, 422, 516
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 338, 512
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 110, 305, 472
BanII GRGCYC 3 cut(s) 266, 320, 444
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 325, 499
BccI CCATC 4 cut(s) 45, 62, 74, 512
BciT130I CCWGG 2 cut(s) 189, 407
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 3 cut(s) 383, 422, 516
BfaI CTAG 2 cut(s) 170, 483
BfmI CTRYAG 2 cut(s) 326, 339
BglII AGATCT 1 cut(s) 485
BisI GCNGC 4 cut(s) 33, 151, 339, 513
BlsI GCNGC 4 cut(s) 34, 152, 340, 514
Bme1390I CCNGG 3 cut(s) 189, 200, 407
BmrFI CCNGG 3 cut(s) 189, 200, 407
BpuMI CCSGG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 57
BsaI GGTCTC 2 cut(s) 383, 422
BsaJI CCNNGG 3 cut(s) 393, 405, 444
BsaWI WCCGGW 2 cut(s) 247, 431
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 2 cut(s) 189, 407
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 393, 405, 444
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 4 cut(s) 23, 29, 347, 379
BseRI GAGGAG 1 cut(s) 17
BseXI GCAGC 2 cut(s) 325, 499
BshFI GGCC 1 cut(s) 398
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 3 cut(s) 199, 248, 432
BsmAI GTCTC 3 cut(s) 383, 422, 516
BsnI GGCC 1 cut(s) 398
Bso31I GGTCTC 2 cut(s) 383, 422
Bsp1286I GDGCHC 3 cut(s) 266, 320, 444
Bsp143I GATC 4 cut(s) 58, 122, 361, 485
BspACI CCGC 2 cut(s) 33, 151
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 4 cut(s) 22, 28, 346, 378
BspDI ATCGAT 1 cut(s) 57
BspMAI CTGCAG 2 cut(s) 330, 343
BspPI GGATC 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 383, 422
BsrDI GCAATG 1 cut(s) 165
BssECI CCNNGG 3 cut(s) 393, 405, 444
BssMI GATC 4 cut(s) 58, 122, 361, 485
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 2 cut(s) 189, 407
Bst4CI ACNGT 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 5 cut(s) 9, 15, 333, 365, 489
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 4 cut(s) 61, 125, 364, 488
BstMAI GTCTC 3 cut(s) 383, 422, 516
BstMBI GATC 4 cut(s) 58, 122, 361, 485
BstMWI GCNNNNNNNGC 2 cut(s) 500, 509
BstNI CCWGG 2 cut(s) 189, 407
BstSCI CCNGG 3 cut(s) 187, 198, 405
BstSFI CTRYAG 2 cut(s) 326, 339
BstV1I GCAGC 2 cut(s) 325, 499
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 398
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 503
Cac8I GCNNGC 1 cut(s) 320
ClaI ATCGAT 1 cut(s) 57
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 3 cut(s) 95, 371, 541
DdeI CTNAG 5 cut(s) 9, 15, 333, 365, 489
DpnI GATC 4 cut(s) 60, 124, 363, 487
DpnII GATC 4 cut(s) 58, 122, 361, 485
DraI TTTAAA 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 444
Eco24I GRGCYC 3 cut(s) 266, 320, 444
Eco31I GGTCTC 2 cut(s) 383, 422
Eco32I GATATC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 318
Eco57I CTGAAG 3 cut(s) 185, 255, 527
EcoICRI GAGCTC 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 187, 405
EcoRV GATATC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 3 cut(s) 266, 320, 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 98, 374, 544
FaiI YATR 7 cut(s) 89, 91, 96, 282, 372, 401, 542
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 3 cut(s) 94, 370, 540
Fnu4HI GCNGC 4 cut(s) 33, 151, 339, 513
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 3 cut(s) 266, 320, 444
Fsp4HI GCNGC 4 cut(s) 33, 151, 339, 513
FspBI CTAG 2 cut(s) 170, 483
GluI GCNGC 4 cut(s) 33, 151, 339, 513
HaeIII GGCC 1 cut(s) 398
HapII CCGG 3 cut(s) 199, 248, 432
Hin1II CATG 3 cut(s) 98, 374, 544
HinfI GANTC 2 cut(s) 13, 331
HpaII CCGG 3 cut(s) 199, 248, 432
HphI GGTGA 3 cut(s) 110, 305, 472
Hpy188I TCNGA 2 cut(s) 12, 274
Hpy188III TCNNGA 5 cut(s) 17, 41, 259, 359, 483
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 328, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 509
HpyF3I CTNAG 5 cut(s) 9, 15, 333, 365, 489
Hsp92II CATG 3 cut(s) 98, 374, 544
Kzo9I GATC 4 cut(s) 58, 122, 361, 485
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 2 cut(s) 325, 499
MaeI CTAG 2 cut(s) 170, 483
MaeIII GTNAC 1 cut(s) 202
MalI GATC 4 cut(s) 60, 124, 363, 487
MboI GATC 4 cut(s) 58, 122, 361, 485
MboII GAAGA 2 cut(s) 32, 428
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 3 cut(s) 266, 320, 444
MlyI GAGTC 2 cut(s) 7, 325
MnlI CCTC 4 cut(s) 38, 289, 301, 403
MseI TTAA 1 cut(s) 351
MspI CCGG 3 cut(s) 199, 248, 432
MspR9I CCNGG 3 cut(s) 189, 200, 407
MvaI CCWGG 2 cut(s) 189, 407
MwoI GCNNNNNNNGC 2 cut(s) 500, 509
NciI CCSGG 1 cut(s) 200
NdeII GATC 4 cut(s) 58, 122, 361, 485
NlaIII CATG 3 cut(s) 98, 374, 544
NmeAIII GCCGAG 1 cut(s) 374
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 4 cut(s) 34, 152, 340, 514
PleI GAGTC 2 cut(s) 7, 325
PpsI GAGTC 2 cut(s) 7, 325
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 2 cut(s) 187, 405
PspGI CCWGG 2 cut(s) 187, 405
PstI CTGCAG 2 cut(s) 330, 343
PsuI RGATCY 1 cut(s) 485
SacI GAGCTC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 4 cut(s) 33, 151, 339, 513
Sau3AI GATC 4 cut(s) 58, 122, 361, 485
SchI GAGTC 2 cut(s) 7, 325
ScrFI CCNGG 3 cut(s) 189, 200, 407
SduI GDGCHC 3 cut(s) 266, 320, 444
SetI ASST 5 cut(s) 171, 281, 320, 358, 395
SfcI CTRYAG 2 cut(s) 326, 339
SsiI CCGC 2 cut(s) 33, 151
SspMI CTAG 2 cut(s) 170, 483
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 3 cut(s) 187, 198, 405
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 42, 57
TauI GCSGC 2 cut(s) 35, 153
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 510
TseI GCWGC 2 cut(s) 338, 512
TspDTI ATGAA 3 cut(s) 132, 191, 429
TspRI CASTG 1 cut(s) 510
XbaI TCTAGA 1 cut(s) 482
XspI CTAG 2 cut(s) 170, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.