Rroxscaffold_4G00321180
NAC Family

Nascent polypeptide-associated complex subunit alpha-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011752
Physical Location & Seq
Reverse (-)
50369514 .. 50371590
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321180.1

Sequence Viewer

Length: 555 bp
ATGACTGCTCAGACTCAGGAAGAACTCCTCGCCGCCCATCTCGAACAGCAAACCATCGATGTTGTGATGGATGTAAGATTTGAGATAGGTGGACAAGATGGGGAAGCGAGTGGCAGGTCAAAGCAAAGTAGAAGTGAAAAGAAAAGCCGCAAAGCAATGCTGAAGCTAGGAATGAAATCTATTCCAGGAGTTAGCCGGGTCACAGTCAAAAAGAGCAAGAATATCTTATTTGTGATATCCAAACCGGATGTTTTCAAGAGCCCAACTTCAGACACCTATGTTATCTTTGGTGAGGCAAAGATTGAGGATTTGAGCTCGCAACTGCAGACTCAGGCTGCAGAGCAGTTTAAAGCTCCTGATCTCAGTCATGTGATTTCCAAACCAGAGACCTCGGCCATAGCCCAGGACGATGAAGATGTAGATGAGACCGGAGTAGAGCCCAAGGATATTGAGTTGGTGATGACACAAGCAGGAGTTTCTAGATCAAAGGCTGTAAAGGCACTGAAGGCTGCTGATGGAGACATTGTTTCTGCTATCATGGAACTTACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAC

Protein Analysis

184

Amino Acids

19.97

Weight (kDa)

5.19

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAC PF01849 46 - 101 9.5e-23 NAC domain
UBA_HYPK PF19026 144 - 183 6.3e-13 HYPK UBA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011752)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12390 AT5G13850
fragaria_vesca FvH4_7g04351
malus_domestica MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis pycom03g14650 pycom11g18620
rosa_chinensis RchiOBHm_Chr1g0329361
rosa_laevigata RLG00000029899
rosa_multiflora Rmu_sc0001359.1_g000007
rosa_roxburghii Rroxscaffold_4G00321180
rosa_rugosa Rorug01G0078800
rosa_samantha Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana Rw1G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AciI CCGC 2 cut(s) 33, 148
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 3 cut(s) 182, 252, 524
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 2 cut(s) 184, 402
AluBI AGCT 3 cut(s) 166, 315, 353
AluI AGCT 3 cut(s) 166, 315, 353
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 3 cut(s) 380, 419, 513
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 335, 509
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 302, 469
BanII GRGCYC 3 cut(s) 263, 317, 441
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 322, 496
BccI CCATC 5 cut(s) 45, 61, 62, 92, 509
BciT130I CCWGG 2 cut(s) 186, 404
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 3 cut(s) 380, 419, 513
BfaI CTAG 2 cut(s) 167, 480
BfmI CTRYAG 2 cut(s) 323, 336
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 4 cut(s) 33, 148, 336, 510
BlsI GCNGC 4 cut(s) 34, 149, 337, 511
Bme1390I CCNGG 3 cut(s) 186, 197, 404
BmrFI CCNGG 3 cut(s) 186, 197, 404
BpuMI CCSGG 1 cut(s) 197
Bsa29I ATCGAT 1 cut(s) 57
BsaI GGTCTC 2 cut(s) 380, 419
BsaJI CCNNGG 3 cut(s) 390, 402, 441
BsaWI WCCGGW 2 cut(s) 244, 428
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 186, 404
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 390, 402, 441
BseGI GGATG 2 cut(s) 76, 253
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 4 cut(s) 23, 29, 344, 376
BseRI GAGGAG 1 cut(s) 17
BseXI GCAGC 2 cut(s) 322, 496
BshFI GGCC 1 cut(s) 395
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 3 cut(s) 196, 245, 429
BsmAI GTCTC 3 cut(s) 380, 419, 513
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 2 cut(s) 380, 419
Bsp1286I GDGCHC 3 cut(s) 263, 317, 441
Bsp143I GATC 2 cut(s) 358, 482
BspACI CCGC 2 cut(s) 33, 148
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 4 cut(s) 22, 28, 343, 375
BspDI ATCGAT 1 cut(s) 57
BspMAI CTGCAG 2 cut(s) 327, 340
BspMI ACCTGC 1 cut(s) 105
BspTNI GGTCTC 2 cut(s) 380, 419
BsrDI GCAATG 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 390, 402, 441
BssMI GATC 2 cut(s) 358, 482
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 186, 404
Bst4CI ACNGT 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 4 cut(s) 9, 15, 330, 362
BstF5I GGATG 2 cut(s) 76, 253
BstKTI GATC 2 cut(s) 361, 485
BstMAI GTCTC 3 cut(s) 380, 419, 513
BstMBI GATC 2 cut(s) 358, 482
BstMWI GCNNNNNNNGC 2 cut(s) 497, 506
BstNI CCWGG 2 cut(s) 186, 404
BstSCI CCNGG 3 cut(s) 184, 195, 402
BstSFI CTRYAG 2 cut(s) 323, 336
BstV1I GCAGC 2 cut(s) 322, 496
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 395
BsuTUI ATCGAT 1 cut(s) 57
BtsCI GGATG 2 cut(s) 76, 253
BtsIMutI CAGTG 1 cut(s) 500
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 317
ClaI ATCGAT 1 cut(s) 57
CviAII CATG 2 cut(s) 368, 538
DdeI CTNAG 4 cut(s) 9, 15, 330, 362
DpnI GATC 2 cut(s) 360, 484
DpnII GATC 2 cut(s) 358, 482
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 441
Eco24I GRGCYC 3 cut(s) 263, 317, 441
Eco31I GGTCTC 2 cut(s) 380, 419
Eco32I GATATC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 315
Eco57I CTGAAG 3 cut(s) 182, 252, 524
EcoICRI GAGCTC 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 184, 402
EcoRV GATATC 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 441
EcoT38I GRGCYC 3 cut(s) 263, 317, 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 2 cut(s) 371, 541
FaiI YATR 4 cut(s) 279, 369, 398, 539
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 2 cut(s) 367, 537
Fnu4HI GCNGC 4 cut(s) 33, 148, 336, 510
FokI GGATG 2 cut(s) 83, 260
FriOI GRGCYC 3 cut(s) 263, 317, 441
Fsp4HI GCNGC 4 cut(s) 33, 148, 336, 510
FspBI CTAG 2 cut(s) 167, 480
GluI GCNGC 4 cut(s) 33, 148, 336, 510
HaeIII GGCC 1 cut(s) 395
HapII CCGG 3 cut(s) 196, 245, 429
Hin1II CATG 2 cut(s) 371, 541
HinfI GANTC 2 cut(s) 13, 328
HpaII CCGG 3 cut(s) 196, 245, 429
HphI GGTGA 2 cut(s) 302, 469
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 2 cut(s) 12, 271
Hpy188III TCNNGA 5 cut(s) 17, 41, 256, 356, 480
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 325, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 506
HpyF3I CTNAG 4 cut(s) 9, 15, 330, 362
Hsp92II CATG 2 cut(s) 371, 541
Kzo9I GATC 2 cut(s) 358, 482
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 2 cut(s) 322, 496
MaeI CTAG 2 cut(s) 167, 480
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 360, 484
MboI GATC 2 cut(s) 358, 482
MboII GAAGA 2 cut(s) 32, 425
MhlI GDGCHC 3 cut(s) 263, 317, 441
MlyI GAGTC 2 cut(s) 7, 322
MnlI CCTC 4 cut(s) 38, 286, 298, 400
MseI TTAA 1 cut(s) 348
MspI CCGG 3 cut(s) 196, 245, 429
MspR9I CCNGG 3 cut(s) 186, 197, 404
MvaI CCWGG 2 cut(s) 186, 404
MwoI GCNNNNNNNGC 2 cut(s) 497, 506
NciI CCSGG 1 cut(s) 197
NdeII GATC 2 cut(s) 358, 482
NlaIII CATG 2 cut(s) 371, 541
NmeAIII GCCGAG 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 4 cut(s) 34, 149, 337, 511
PleI GAGTC 2 cut(s) 7, 322
PpsI GAGTC 2 cut(s) 7, 322
Psp124BI GAGCTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 184, 402
PspGI CCWGG 2 cut(s) 184, 402
PstI CTGCAG 2 cut(s) 327, 340
SacI GAGCTC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 4 cut(s) 33, 148, 336, 510
Sau3AI GATC 2 cut(s) 358, 482
SchI GAGTC 2 cut(s) 7, 322
ScrFI CCNGG 3 cut(s) 186, 197, 404
SduI GDGCHC 3 cut(s) 263, 317, 441
SetI ASST 7 cut(s) 91, 119, 168, 278, 317, 355, 392
SfcI CTRYAG 2 cut(s) 323, 336
SsiI CCGC 2 cut(s) 33, 148
SspMI CTAG 2 cut(s) 167, 480
SstI GAGCTC 1 cut(s) 317
StyD4I CCNGG 3 cut(s) 184, 195, 402
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 42, 57
TauI GCSGC 2 cut(s) 35, 150
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 2 cut(s) 335, 509
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 188, 426
TspRI CASTG 1 cut(s) 507
XbaI TCTAGA 1 cut(s) 479
XspI CTAG 2 cut(s) 167, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.