Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011752

Physical Location & Seq

Genomic Coordinates Forward (+)

4471277 .. 4472946

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACTGCCGAACAGAAAGTGGAGCTCGCCGCCAAATTGGAAGAGCAGAAGATCGATCTTGATAAACCTGAGGTTGAAGATGATGATGACAATGATGAGGATGATTCCGAGGACGATGACGAGGCGGAGGGACATGATGGGGAGGCCGGTGGCCGGTCAAAGCAAAGCAGAAGTGAGAAAAAGAGTCGTAAAGCTATGTTGAAGCTTGGGATGAAACCAATCACTGGTGTTAGCCGTGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTGATATCAAAACCTGATGTGTTCAAGAGTCCAGCTTCAGATACATATGTGATCTTTGGTGAGGCCAAGATAGAGGATTTGAGCTCGCAGCTGCAGAGTCAAGCCGCAGAGCAGTTCAAGGCTCCCAACCTCAGCAACGTGATTTCACAGGGAGAAACATCGAGTGCTGCAACTGCAGCTGCTGTTCAAGATGATGATGATGAAGAGGTAGACGAGGAGGGAGTAGAGCCAAAGGACATCGAGCTTGTGATGACCCAAGCAGGAGTGTCTAAGCCAAGGGCAGTTAAGGCGCTCAAGCTCGCTAATGGAGATATAGTCTCTGCCATCATGGAGCTTACCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005840 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0012505 GO:0022626 GO:0030054 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0055044 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAC

Protein Analysis

204

Amino Acids

22.06

Weight (kDa)

4.41

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAC	PF01849	59 - 114	3.8e-23	NAC domain
UBA_HYPK	PF19026	165 - 203	2.4e-12	HYPK UBA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12390 AT5G13850
fragaria_vesca	FvH4_7g04351
malus_domestica	MD03G1194100.v1.1 MD11G1210600.v1.1
prunus_persica	Prupe.2G049200_v2.0.a1 Prupe.7G020000_v2.0.a1
pyrus_communis	pycom03g14650 pycom11g18620
rosa_chinensis	RchiOBHm_Chr1g0329361
rosa_laevigata	RLG00000029899
rosa_multiflora	Rmu_sc0001359.1_g000007
rosa_roxburghii	Rroxscaffold_4G00321180
rosa_rugosa	Rorug01G0078800
rosa_samantha	Rh1AG097100 Rh1BG077700 Rh1CG094000 Rh1DG100700
rosa_wichuraiana	Rw1G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	3 cut(s)	30, 125, 375
AcoI	YGGCCR	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	153, 224
AgsI	TTSAA	5 cut(s)	77, 202, 295, 388, 458
Alw21I	GWGCWC	2 cut(s)	27, 356
Alw26I	GTCTC	1 cut(s)	592
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	3 cut(s)	144, 151, 333
ApeKI	GCWGC	5 cut(s)	358, 361, 437, 446, 449
AspLEI	GCGC	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	232, 341
AxyI	CCTNAGG	1 cut(s)	69
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BanII	GRGCYC	2 cut(s)	27, 356
Bbv12I	GWGCWC	2 cut(s)	27, 356
BbvCI	CCTCAGC	1 cut(s)	401
BbvI	GCAGC	5 cut(s)	348, 370, 424, 436, 458
BccI	CCATC	2 cut(s)	131, 602
BceAI	ACGGC	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	592
BfmI	CTRYAG	2 cut(s)	362, 444
BfoI	RGCGCY	1 cut(s)	563
BisI	GCNGC	7 cut(s)	30, 359, 362, 375, 438, 447, 450
BlsI	GCNGC	7 cut(s)	31, 360, 363, 376, 439, 448, 451
BmiI	GGNNCC	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	108, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 224
Bse118I	RCCGGY	2 cut(s)	146, 153
Bse1I	ACTGG	1 cut(s)	229
Bse21I	CCTNAGG	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	108, 545
BseGI	GGATG	2 cut(s)	106, 216
BseLI	CCNNNNNNNGG	2 cut(s)	153, 224
BseMII	CTCAG	2 cut(s)	60, 415
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	5 cut(s)	348, 370, 424, 436, 458
BshFI	GGCC	3 cut(s)	146, 153, 335
BshVI	ATCGAT	1 cut(s)	54
BsiHKAI	GWGCWC	2 cut(s)	27, 356
BsiSI	CCGG	2 cut(s)	147, 154
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	153, 224
BsmAI	GTCTC	1 cut(s)	592
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	146, 153, 335
Bsp1286I	GDGCHC	2 cut(s)	27, 356
Bsp143I	GATC	3 cut(s)	51, 55, 321
BspACI	CCGC	3 cut(s)	30, 125, 375
BspANI	GGCC	3 cut(s)	146, 153, 335
BspCNI	CTCAG	2 cut(s)	61, 414
BspDI	ATCGAT	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	393
BspMAI	CTGCAG	2 cut(s)	366, 448
BspQI	GCTCTTC	1 cut(s)	36
BsrFI	RCCGGY	2 cut(s)	146, 153
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	2 cut(s)	146, 153
BssECI	CCNNGG	2 cut(s)	108, 545
BssMI	GATC	3 cut(s)	51, 55, 321
BssT1I	CCWWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	36, 468
BstC8I	GCNNGC	3 cut(s)	27, 356, 570
BstDEI	CTNAG	3 cut(s)	69, 401, 540
BstF5I	GGATG	2 cut(s)	106, 216
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	3 cut(s)	54, 58, 324
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	3 cut(s)	51, 55, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 446, 557
BstSFI	CTRYAG	2 cut(s)	362, 444
BstV1I	GCAGC	5 cut(s)	348, 370, 424, 436, 458
Bsu15I	ATCGAT	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	146, 153, 335
BsuTUI	ATCGAT	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	106, 216
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	27, 356, 570
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	562
Cfr10I	RCCGGY	2 cut(s)	146, 153
ClaI	ATCGAT	1 cut(s)	54
CviAII	CATG	2 cut(s)	134, 598
DdeI	CTNAG	3 cut(s)	69, 401, 540
DpnI	GATC	3 cut(s)	53, 57, 323
DpnII	GATC	3 cut(s)	51, 55, 321
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	36, 468
EarI	CTCTTC	2 cut(s)	36, 468
EciI	GGCGGA	1 cut(s)	140
Ecl136II	GAGCTC	2 cut(s)	25, 354
Eco130I	CCWWGG	1 cut(s)	545
Eco24I	GRGCYC	2 cut(s)	27, 356
Eco32I	GATATC	1 cut(s)	276
Eco53kI	GAGCTC	2 cut(s)	25, 354
Eco57I	CTGAAG	1 cut(s)	291
Eco81I	CCTNAGG	1 cut(s)	69
EcoICRI	GAGCTC	2 cut(s)	25, 354
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	545
EcoT38I	GRGCYC	2 cut(s)	27, 356
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	2 cut(s)	137, 601
FaiI	YATR	6 cut(s)	135, 197, 316, 318, 584, 599
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	2 cut(s)	133, 597
FauNDI	CATATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	7 cut(s)	30, 359, 362, 375, 438, 447, 450
FokI	GGATG	2 cut(s)	113, 223
FriOI	GRGCYC	2 cut(s)	27, 356
Fsp4HI	GCNGC	7 cut(s)	30, 359, 362, 375, 438, 447, 450
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	7 cut(s)	30, 359, 362, 375, 438, 447, 450
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	3 cut(s)	146, 153, 335
HapII	CCGG	2 cut(s)	147, 154
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	2 cut(s)	137, 601
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	4 cut(s)	104, 184, 298, 367
HpaII	CCGG	2 cut(s)	147, 154
HphI	GGTGA	2 cut(s)	232, 341
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	2 cut(s)	109, 310
Hpy188III	TCNNGA	3 cut(s)	59, 295, 458
Hpy8I	GTNNAC	1 cut(s)	481
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	364, 440, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 446, 557
HpyF3I	CTNAG	3 cut(s)	69, 401, 540
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	137, 601
HspAI	GCGC	1 cut(s)	560
Kzo9I	GATC	3 cut(s)	51, 55, 321
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	3 cut(s)	22, 397, 601
LpnPI	CCDG	8 cut(s)	81, 160, 167, 210, 297, 315, 404, 516
Lsp1109I	GCAGC	5 cut(s)	348, 370, 424, 436, 458
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	3 cut(s)	53, 57, 323
MboI	GATC	3 cut(s)	51, 55, 321
MboII	GAAGA	4 cut(s)	53, 61, 89, 485
MhlI	GDGCHC	2 cut(s)	27, 356
MluCI	AATT	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	193, 307, 376
MseI	TTAA	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	361, 449
MspI	CCGG	2 cut(s)	147, 154
MwoI	GCNNNNNNNGC	3 cut(s)	443, 446, 557
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	51, 55, 321
NlaIII	CATG	2 cut(s)	137, 601
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	7 cut(s)	31, 360, 363, 376, 439, 448, 451
PleI	GAGTC	3 cut(s)	192, 306, 375
PpsI	GAGTC	3 cut(s)	192, 306, 375
Psp124BI	GAGCTC	2 cut(s)	27, 356
PspN4I	GGNNCC	1 cut(s)	393
PstI	CTGCAG	2 cut(s)	366, 448
PstNI	CAGNNNCTG	1 cut(s)	452
PvuII	CAGCTG	2 cut(s)	361, 449
SacI	GAGCTC	2 cut(s)	27, 356
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	7 cut(s)	30, 359, 362, 375, 438, 447, 450
Sau3AI	GATC	3 cut(s)	51, 55, 321
SchI	GAGTC	3 cut(s)	193, 307, 376
SduI	GDGCHC	2 cut(s)	27, 356
SfcI	CTRYAG	2 cut(s)	362, 444
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	1 cut(s)	35
SsiI	CCGC	3 cut(s)	30, 125, 375
SstI	GAGCTC	2 cut(s)	27, 356
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	3 cut(s)	54, 431, 510
TasI	AATT	1 cut(s)	35
TauI	GCSGC	2 cut(s)	32, 377
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	5 cut(s)	358, 361, 437, 446, 449
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	227, 486
TspRI	CASTG	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.