AT3G12700

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
4036945 .. 4039185
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12700.3

Sequence Viewer

Length: 1386 bp
ATGTATATAAATACTCTGTTTTGGAAACAGAACCCAACAGGGGACAAAAAAAATCAAGAAGAAAAAATGCAGAAGACATTGCTCTCATGTCTCATCACGACGCTCCTCCTAATCACCGTCGCAGATTCCATGAAAGACACCTCGGTGCGGCTAAAATTAGCGCACAGGGACACTCTCTTGCCGAAACCTCTCAGCCGCATTGAGGACGTTATCGGCGCCGACCAGAAGCGTCATAGTTTGATATCTCGGAAGCGTAACTCCACAGTAGGAGTGAAAATGGATTTGGGATCAGGGATTGATTACGGAACGGCGCAGTATTTCACGGAGATTAGAGTTGGAACTCCGGCGAAGAAGTTCAGAGTGGTGGTTGATACAGGAAGCGAGCTTACTTGGGTGAATTGTAGATACCGTGCGAGAGGCAAAGACAATCGGAGAGTGTTTAGAGCTGACGAATCAAAGAGCTTTAAGACCGTTGGATGTTTAACTCAGACTTGTAAAGTTGATCTGATGAATCTCTTCTCACTCACTACTTGTCCTACTCCTTCCACTCCTTGCTCCTATGATTACAGATATGCAGATGGGTCAGCAGCACAAGGCGTATTCGCAAAGGAGACTATCACAGTTGGTCTCACTAATGGTCGTATGGCTAGACTCCCTGGTCACCTCATTGGTTGTAGTAGTTCCTTTACAGGACAGAGCTTCCAAGGAGCCGATGGGGTTCTTGGTTTAGCCTTTAGCGATTTCTCCTTCACTTCCACAGCCACTAGTCTCTATGGTGCCAAATTTTCATACTGCCTTGTTGACCATCTTTCCAACAAAAACGTCTCCAACTATCTCATCTTCGGCTCCTCCAGATCCACCAAAACCGCCTTCCGACGAACCACTCCGCTTGATCTCACTCGCATCCCACCCTTCTACGCAATCAACGTCATTGGAATCTCCCTCGGATACGACATGCTTGATATCCCCTCGCAAGTATGGGACGCAACTTCCGGTGGTGGGACTATCTTAGACTCTGGAACCAGCCTCACGTTATTGGCTGACGCCGCGTACAAACAGGTGGTTACAGGGCTCGCACGCTACCTTGTTGAGTTGAAAAGAGTCAAACCAGAAGGAGTACCAATAGAGTACTGTTTTAGTTTCACTTCCGGATTTAACGTGAGCAAGTTACCGCAGCTGACATTTCATTTAAAAGGCGGTGCACGATTTGAGCCACATCGTAAAAGTTACCTAGTAGATGCAGCGCCTGGAGTCAAGTGTTTAGGATTTGTGTCGGCTGGAACGCCGGCGACTAATGTGATCGGTAATATAATGCAGCAGAATTATTTGTGGGAGTTTGATCTCATGGCCTCAACTTTGTCTTTTGCTCCCTCTGCTTGCACTTAG

Protein Analysis

461

Amino Acids

50.57

Weight (kDa)

9.31

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 105 - 159 2.5e-09 Eukaryotic aspartyl protease
TAXi_N PF14543 106 - 190 2.5e-20 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 657
AccB1I GGYRCC 2 cut(s) 215, 776
AccII CGCG 1 cut(s) 1049
AccIII TCCGGA 1 cut(s) 1148
AciI CCGC 7 cut(s) 148, 196, 867, 887, 1047, 1172, 1197
AclWI GGATC 2 cut(s) 295, 849
AcsI RAATTY 1 cut(s) 782
AcyI GRCGYC 2 cut(s) 216, 1044
AfaI GTAC 3 cut(s) 1052, 1119, 1130
AfiI CCNNNNNNNGG 4 cut(s) 40, 147, 202, 999
AgsI TTSAA 1 cut(s) 1096
AhlI ACTAGT 1 cut(s) 764
AjnI CCWGG 2 cut(s) 655, 1246
AjuI GAANNNNNNNTTGG 4 cut(s) 266, 298, 854, 886
AleI CACNNNNGTG 1 cut(s) 143
AluBI AGCT 5 cut(s) 385, 446, 462, 699, 1177
AluI AGCT 5 cut(s) 385, 446, 462, 699, 1177
Alw21I GWGCWC 1 cut(s) 1204
Alw26I GTCTC 5 cut(s) 95, 605, 632, 773, 829
Alw44I GTGCAC 1 cut(s) 1200
AlwI GGATC 2 cut(s) 295, 849
AlwNI CAGNNNCTG 1 cut(s) 1247
Aor13HI TCCGGA 1 cut(s) 1148
AoxI GGCC 1 cut(s) 1347
ApaLI GTGCAC 1 cut(s) 1200
ApeKI GCWGC 4 cut(s) 587, 1174, 1241, 1315
ApoI RAATTY 1 cut(s) 782
Asp700I GAANNNNTTC 2 cut(s) 353, 515
AspLEI GCGC 4 cut(s) 163, 218, 313, 1246
AsuHPI GGTGA 3 cut(s) 106, 406, 653
BaeGI GKGCMC 1 cut(s) 1204
BanI GGYRCC 2 cut(s) 215, 776
BanII GRGCYC 1 cut(s) 1074
BarI GAAGNNNNNNTAC 2 cut(s) 370, 402
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 1204
BbvI GCAGC 4 cut(s) 599, 1186, 1253, 1327
BccI CCATC 3 cut(s) 572, 707, 813
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 2 cut(s) 657, 1248
BciVI GTATCC 1 cut(s) 941
BcoDI GTCTC 5 cut(s) 95, 605, 632, 773, 829
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 3 cut(s) 648, 765, 1232
BfoI RGCGCY 2 cut(s) 219, 1247
BfuI GTATCC 1 cut(s) 941
BisI GCNGC 7 cut(s) 149, 196, 588, 1047, 1175, 1242, 1316
BlsI GCNGC 7 cut(s) 150, 197, 589, 1048, 1176, 1243, 1317
BmcAI AGTACT 1 cut(s) 1130
Bme1390I CCNGG 2 cut(s) 657, 1248
BmiI GGNNCC 5 cut(s) 217, 709, 778, 847, 1021
BmrFI CCNGG 2 cut(s) 657, 1248
BmsI GCATC 2 cut(s) 912, 1228
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 2 cut(s) 835, 1269
BsaHI GRCGYC 2 cut(s) 216, 1044
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 4 cut(s) 141, 655, 703, 943
BsaWI WCCGGW 2 cut(s) 992, 1148
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 147, 202, 999
Bse118I RCCGGY 1 cut(s) 1285
Bse3DI GCAATG 1 cut(s) 77
BseAI TCCGGA 1 cut(s) 1148
BseBI CCWGG 2 cut(s) 657, 1248
BseDI CCNNGG 4 cut(s) 141, 655, 703, 943
BseGI GGATG 2 cut(s) 482, 903
BseLI CCNNNNNNNGG 4 cut(s) 40, 147, 202, 999
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 205, 500
BseRI GAGGAG 2 cut(s) 95, 838
BseSI GKGCMC 1 cut(s) 1204
BseXI GCAGC 4 cut(s) 599, 1186, 1253, 1327
Bsh1236I CGCG 1 cut(s) 1049
BshFI GGCC 1 cut(s) 1349
BshNI GGYRCC 2 cut(s) 215, 776
BsiHKAI GWGCWC 1 cut(s) 1204
BsiSI CCGG 4 cut(s) 344, 993, 1149, 1286
BslFI GGGAC 4 cut(s) 56, 182, 995, 1015
BslI CCNNNNNNNGG 4 cut(s) 40, 147, 202, 999
BsmAI GTCTC 5 cut(s) 95, 605, 632, 773, 829
BsmBI CGTCTC 1 cut(s) 829
BsmFI GGGAC 4 cut(s) 56, 182, 995, 1015
BsnI GGCC 1 cut(s) 1349
Bso31I GGTCTC 1 cut(s) 632
Bsp1286I GDGCHC 2 cut(s) 1074, 1204
Bsp13I TCCGGA 1 cut(s) 1148
Bsp143I GATC 6 cut(s) 287, 502, 854, 892, 1299, 1339
BspACI CCGC 7 cut(s) 148, 196, 867, 887, 1047, 1172, 1197
BspANI GGCC 1 cut(s) 1349
BspCNI CTCAG 2 cut(s) 204, 499
BspEI TCCGGA 1 cut(s) 1148
BspFNI CGCG 1 cut(s) 1049
BspLI GGNNCC 5 cut(s) 217, 709, 778, 847, 1021
BspPI GGATC 2 cut(s) 295, 849
BspT107I GGYRCC 2 cut(s) 215, 776
BspTNI GGTCTC 1 cut(s) 632
BsrDI GCAATG 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 1285
BssAI RCCGGY 1 cut(s) 1285
BssECI CCNNGG 4 cut(s) 141, 655, 703, 943
BssMI GATC 6 cut(s) 287, 502, 854, 892, 1299, 1339
BssNI GRCGYC 2 cut(s) 216, 1044
BssT1I CCWWGG 1 cut(s) 703
Bst2UI CCWGG 2 cut(s) 657, 1248
Bst4CI ACNGT 6 cut(s) 118, 265, 410, 472, 622, 1133
Bst6I CTCTTC 1 cut(s) 521
BstACI GRCGYC 2 cut(s) 216, 1044
BstC8I GCNNGC 5 cut(s) 383, 1074, 1078, 1287, 1378
BstDEI CTNAG 4 cut(s) 191, 486, 1009, 1383
BstEII GGTNACC 1 cut(s) 659
BstF5I GGATG 2 cut(s) 482, 903
BstFNI CGCG 1 cut(s) 1049
BstH2I RGCGCY 2 cut(s) 219, 1247
BstHHI GCGC 4 cut(s) 163, 218, 313, 1246
BstKTI GATC 6 cut(s) 290, 505, 857, 895, 1302, 1342
BstMAI GTCTC 5 cut(s) 95, 605, 632, 773, 829
BstMBI GATC 6 cut(s) 287, 502, 854, 892, 1299, 1339
BstMWI GCNNNNNNNGC 2 cut(s) 1046, 1373
BstNI CCWGG 2 cut(s) 657, 1248
BstNSI RCATGY 1 cut(s) 958
BstPI GGTNACC 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 655, 1246
BstSLI GKGCMC 1 cut(s) 1204
BstUI CGCG 1 cut(s) 1049
BstV1I GCAGC 4 cut(s) 599, 1186, 1253, 1327
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 854
BstYI RGATCY 1 cut(s) 854
BsuI GTATCC 1 cut(s) 941
BsuRI GGCC 1 cut(s) 1349
BtsCI GGATG 2 cut(s) 482, 903
Cac8I GCNNGC 5 cut(s) 383, 1074, 1078, 1287, 1378
CaiI CAGNNNCTG 1 cut(s) 1247
CfoI GCGC 4 cut(s) 163, 218, 313, 1246
Cfr10I RCCGGY 1 cut(s) 1285
CseI GACGC 4 cut(s) 109, 218, 992, 1052
Csp6I GTAC 3 cut(s) 1051, 1118, 1129
CspCI CAANNNNNGTGG 2 cut(s) 871, 906
CviAII CATG 4 cut(s) 87, 130, 955, 1345
CviQI GTAC 3 cut(s) 1051, 1118, 1129
DdeI CTNAG 4 cut(s) 191, 486, 1009, 1383
DinI GGCGCC 1 cut(s) 217
DpnI GATC 6 cut(s) 289, 504, 856, 894, 1301, 1341
DpnII GATC 6 cut(s) 287, 502, 854, 892, 1299, 1339
DraI TTTAAA 1 cut(s) 1191
DrdI GACNNNNNNGTC 1 cut(s) 657
DseDI GACNNNNNNGTC 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 521
EarI CTCTTC 1 cut(s) 521
Eco130I CCWWGG 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 1074
Eco31I GGTCTC 1 cut(s) 632
Eco32I GATATC 2 cut(s) 243, 964
Eco91I GGTNACC 1 cut(s) 659
EcoO65I GGTNACC 1 cut(s) 659
EcoRII CCWGG 2 cut(s) 655, 1246
EcoRV GATATC 2 cut(s) 243, 964
EcoT14I CCWWGG 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 1074
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 829
FaeI CATG 4 cut(s) 90, 133, 958, 1348
FaqI GGGAC 4 cut(s) 56, 182, 995, 1015
FatI CATG 4 cut(s) 86, 129, 954, 1344
Fnu4HI GCNGC 7 cut(s) 149, 196, 588, 1047, 1175, 1242, 1316
FokI GGATG 2 cut(s) 489, 890
FriOI GRGCYC 1 cut(s) 1074
Fsp4HI GCNGC 7 cut(s) 149, 196, 588, 1047, 1175, 1242, 1316
FspBI CTAG 3 cut(s) 648, 765, 1232
GlaI GCGC 4 cut(s) 162, 217, 312, 1245
GluI GCNGC 7 cut(s) 149, 196, 588, 1047, 1175, 1242, 1316
GsuI CTGGAG 2 cut(s) 835, 1269
HaeII RGCGCY 2 cut(s) 219, 1247
HaeIII GGCC 1 cut(s) 1349
HapII CCGG 4 cut(s) 344, 993, 1149, 1286
HgaI GACGC 4 cut(s) 109, 218, 992, 1052
HhaI GCGC 4 cut(s) 163, 218, 313, 1246
Hin1I GRCGYC 2 cut(s) 216, 1044
Hin1II CATG 4 cut(s) 90, 133, 958, 1348
Hin6I GCGC 4 cut(s) 161, 216, 311, 1244
HinP1I GCGC 4 cut(s) 161, 216, 311, 1244
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HinfI GANTC 8 cut(s) 125, 452, 511, 651, 936, 1013, 1101, 1251
HpaII CCGG 4 cut(s) 344, 993, 1149, 1286
HphI GGTGA 3 cut(s) 106, 406, 653
Hpy166II GTNNAC 2 cut(s) 802, 1202
Hpy188I TCNGA 7 cut(s) 249, 359, 432, 489, 507, 875, 947
Hpy188III TCNNGA 5 cut(s) 56, 97, 852, 1017, 1149
Hpy8I GTNNAC 2 cut(s) 802, 1202
Hpy99I CGWCG 3 cut(s) 103, 122, 879
HpyAV CCTTC 5 cut(s) 552, 757, 880, 922, 1106
HpyCH4III ACNGT 6 cut(s) 118, 265, 410, 472, 622, 1133
HpyCH4IV ACGT 5 cut(s) 207, 822, 927, 1031, 1158
HpyCH4V TGCA 6 cut(s) 70, 575, 1202, 1241, 1315, 1380
HpyF10VI GCNNNNNNNGC 2 cut(s) 1046, 1373
HpyF3I CTNAG 4 cut(s) 191, 486, 1009, 1383
HpySE526I ACGT 5 cut(s) 207, 822, 927, 1031, 1158
Hsp92I GRCGYC 2 cut(s) 216, 1044
Hsp92II CATG 4 cut(s) 90, 133, 958, 1348
HspAI GCGC 4 cut(s) 161, 216, 311, 1244
KasI GGCGCC 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 1148
KroI GCCGGC 1 cut(s) 1285
KroNI GCCGGC 1 cut(s) 1287
Kzo9I GATC 6 cut(s) 287, 502, 854, 892, 1299, 1339
LmnI GCTCC 5 cut(s) 108, 560, 707, 851, 1372
Lsp1109I GCAGC 4 cut(s) 599, 1186, 1253, 1327
LweI GCATC 2 cut(s) 912, 1228
MaeI CTAG 3 cut(s) 648, 765, 1232
MaeII ACGT 5 cut(s) 207, 822, 927, 1031, 1158
MaeIII GTNAC 5 cut(s) 254, 659, 1063, 1167, 1226
MalI GATC 6 cut(s) 289, 504, 856, 894, 1301, 1341
MboI GATC 6 cut(s) 287, 502, 854, 892, 1299, 1339
MboII GAAGA 5 cut(s) 71, 85, 361, 508, 832
MflI RGATCY 1 cut(s) 854
MhlI GDGCHC 2 cut(s) 1074, 1204
MluCI AATT 4 cut(s) 155, 397, 782, 1321
Mly113I GGCGCC 1 cut(s) 216
MlyI GAGTC 4 cut(s) 645, 1007, 1110, 1260
MmeI TCCRAC 5 cut(s) 316, 454, 837, 852, 898
MreI CGCCGGCG 1 cut(s) 1285
MroI TCCGGA 1 cut(s) 1148
MroNI GCCGGC 1 cut(s) 1285
MroXI GAANNNNTTC 2 cut(s) 353, 515
MseI TTAA 4 cut(s) 465, 482, 1155, 1190
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 1177
MspI CCGG 4 cut(s) 344, 993, 1149, 1286
MspR9I CCNGG 2 cut(s) 657, 1248
MvaI CCWGG 2 cut(s) 657, 1248
MvnI CGCG 1 cut(s) 1049
MwoI GCNNNNNNNGC 2 cut(s) 1046, 1373
NaeI GCCGGC 1 cut(s) 1287
NarI GGCGCC 1 cut(s) 216
NdeII GATC 6 cut(s) 287, 502, 854, 892, 1299, 1339
NgoMIV GCCGGC 1 cut(s) 1285
NlaIII CATG 4 cut(s) 90, 133, 958, 1348
NlaIV GGNNCC 5 cut(s) 217, 709, 778, 847, 1021
NmuCI GTSAC 1 cut(s) 659
NspI RCATGY 1 cut(s) 958
OliI CACNNNNGTG 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 924
PdiI GCCGGC 1 cut(s) 1287
PdmI GAANNNNTTC 2 cut(s) 353, 515
PfeI GAWTC 4 cut(s) 125, 452, 511, 936
PkrI GCNGC 7 cut(s) 150, 197, 589, 1048, 1176, 1243, 1317
PleI GAGTC 4 cut(s) 645, 1007, 1109, 1259
PluTI GGCGCC 1 cut(s) 219
PpsI GAGTC 4 cut(s) 645, 1007, 1109, 1259
Psp6I CCWGG 2 cut(s) 655, 1246
PspEI GGTNACC 1 cut(s) 659
PspGI CCWGG 2 cut(s) 655, 1246
PspN4I GGNNCC 5 cut(s) 217, 709, 778, 847, 1021
PstNI CAGNNNCTG 1 cut(s) 1247
PsuI RGATCY 1 cut(s) 854
PvuII CAGCTG 1 cut(s) 1177
RsaI GTAC 3 cut(s) 1052, 1119, 1130
RsaNI GTAC 3 cut(s) 1051, 1118, 1129
RseI CAYNNNNRTG 1 cut(s) 143
SaqAI TTAA 4 cut(s) 465, 482, 1155, 1190
SatI GCNGC 7 cut(s) 149, 196, 588, 1047, 1175, 1242, 1316
Sau3AI GATC 6 cut(s) 287, 502, 854, 892, 1299, 1339
ScaI AGTACT 1 cut(s) 1130
SchI GAGTC 4 cut(s) 645, 1007, 1110, 1260
ScrFI CCNGG 2 cut(s) 657, 1248
SduI GDGCHC 2 cut(s) 1074, 1204
SfaNI GCATC 2 cut(s) 912, 1228
SfoI GGCGCC 1 cut(s) 217
SgrAI CRCCGGYG 1 cut(s) 1285
SmiMI CAYNNNNRTG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 4 cut(s) 155, 397, 782, 1321
SsiI CCGC 7 cut(s) 148, 196, 867, 887, 1047, 1172, 1197
SspDI GGCGCC 1 cut(s) 215
SspMI CTAG 3 cut(s) 648, 765, 1232
StyD4I CCNGG 2 cut(s) 655, 1246
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 6 cut(s) 118, 265, 410, 472, 622, 1133
TaiI ACGT 5 cut(s) 210, 825, 930, 1034, 1161
TasI AATT 4 cut(s) 155, 397, 782, 1321
TatI WGTACW 1 cut(s) 1128
TauI GCSGC 3 cut(s) 151, 198, 1049
TfiI GAWTC 4 cut(s) 125, 452, 511, 936
Tru1I TTAA 4 cut(s) 465, 482, 1155, 1190
Tru9I TTAA 4 cut(s) 465, 482, 1155, 1190
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 4 cut(s) 587, 1174, 1241, 1315
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 4 cut(s) 146, 524, 777, 1175
TspGWI ACGGA 2 cut(s) 318, 338
VneI GTGCAC 1 cut(s) 1200
XapI RAATTY 1 cut(s) 782
XceI RCATGY 1 cut(s) 958
XcmI CCANNNNNNNNNTGG 1 cut(s) 710
XmnI GAANNNNTTC 2 cut(s) 353, 515
XspI CTAG 3 cut(s) 648, 765, 1232
ZrmI AGTACT 1 cut(s) 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.