Rw7G040610

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
63254672 .. 63256554
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040610.1

Sequence Viewer

Length: 1506 bp
ATGATGAAGGGGAGGATGTCAACTAGTTCAACAACATTCCTCTTCATCATTTTCTTGCTTTCTGCCACTCATCATGGACTTTTGCATGTTTGTGCCAATGGTGATCATACCACCATGCGGTTGCCGCTAATTCACAAGTACTCTCCTCATTTCAAAGGAGGAGTTGGTTTGATCAATAAAACCGATATAGATATCATGAAAGAGCTTCACCTCCATGACGTAATCCGCCACCAAACGATTTTCCTAATGAATAGAGATGATCATCAAATCCCAAGGCGACAGGACTCAGAAACTAACTCATCCTTTGCAATGCCGGTGCATTCGGGTTTTGATATGCTGTCGGGGTTGTATTGGGTCGAAGTAAAAATTGGAACACCTCCCAAGACTTTCTTGTTGGCTGCAGATACAGCGAGTGACTTGACATGGATCAAATGCAAATACGATAGAACGTTGACAAAGGAGGCCAAACAGAAAATGATAGACGATCGCAAGAAGAAGAAACACCATCATGGCGATCTCAAAAAGTCATTAATTTTTCTCAATAAAGGTAGGGAATTTCGTGCTGATCTGTCATCGACATTCAATCCTGTTCCATGCTCCGATGGTATGTGCCGCCAAGGGCTCGCACACATGATGTCTTATAAAAACTGCCCAACCCCAACGTCGCCTTGCAGATACACTTACAGGTACATGGGAAAGGAGGGAGCAGATGGTTTCTTTGGGCATGACACTATAACAGTACCCCTCGCAAATGGTAGCAAAACAAAGCTGCCTAATGTGACAATTGGCTGCACAGAGTCCTACCAAAATTTAAAGGAAGGTGATGGCATTCTAGGTTTAGGCTTCGGTTACTACTCATTCGCCGAGACAGTAGTTTCCTCTAAGTTTTCTGGCAAGTTCTCTTACTGCCTAATGTTTCATAGGAGCAACTCGAGTGTGTTGAGTTATCTTACATTTGGTCCCAATAAACAAACTGTTAACAGCCCTATGAGGTACACAAAGTTGATTATGAGGAAGAGGGGAGGTAACTCTAATTTATATGGCGTAAACATAACGGGCATCTCAATCGGGGGCACATTATTGAAGATACCAAGTCAATTTTGGGATGCAACGTCGCGTGATGGTGGTGTAGTGCTTGATTCAGGCTCAACCAACACATTTCTACCCCTACCAGCTTACAAGGCTGTCATGGACGAATTGACAGAGGCTTTGTCAAAATATAATAATTTCGTGATCAAAGAGCTCCCATTTGAATTCTGCTTCAATGATAAAGGATATGACGAGTCTTCGGTGCCTAGACTTGCATTTCATTTTGCAGATGGTGTTCGATATGAGCCACCGGTGAGAAACTATGTTGTACCTGTGACAACGGGGACCAAGTGTATTGGCTTTGTTCCGTCTCCCGATGGCGGGCCTGTTATTGGCAACCAAATGCAGCAAAACCATCTTTGGGAATTTGATATTTCACGTGGTACTGTGGGTTTTGCTCCTTCCAGCTGCACCTAG

Protein Analysis

501

Amino Acids

55.97

Weight (kDa)

9.09

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 117 - 320 3.1e-37 Xylanase inhibitor N-terminal
Asp PF00026 117 - 497 1e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 347 - 496 2.5e-32 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 1291
AccII CGCG 1 cut(s) 1117
AciI CCGC 5 cut(s) 118, 125, 226, 613, 1410
AclI AACGTT 1 cut(s) 449
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 4 cut(s) 554, 808, 1253, 1454
AcvI CACGTG 1 cut(s) 1469
AfaI GTAC 6 cut(s) 140, 689, 741, 995, 1359, 1474
AfiI CCNNNNNNNGG 5 cut(s) 117, 1409, 1410, 1421, 1450
AgeI ACCGGT 1 cut(s) 1339
AgsI TTSAA 6 cut(s) 30, 154, 583, 1084, 1253, 1264
AhlI ACTAGT 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AluBI AGCT 5 cut(s) 205, 769, 1175, 1243, 1497
AluI AGCT 5 cut(s) 205, 769, 1175, 1243, 1497
Alw21I GWGCWC 1 cut(s) 1245
Alw26I GTCTC 2 cut(s) 860, 1404
AlwI GGATC 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 931
AoxI GGCC 2 cut(s) 462, 1412
ApeKI GCWGC 5 cut(s) 398, 769, 789, 1435, 1497
ApoI RAATTY 4 cut(s) 554, 808, 1253, 1454
ArsI GACNNNNNNTTYG 2 cut(s) 1192, 1224
AseI ATTAAT 1 cut(s) 530
AsiGI ACCGGT 1 cut(s) 1339
AspS9I GGNCC 3 cut(s) 959, 1374, 1412
AsuHPI GGTGA 4 cut(s) 113, 200, 833, 1354
AvaI CYCGRG 1 cut(s) 931
AvaII GGWCC 2 cut(s) 959, 1374
BaeGI GKGCMC 1 cut(s) 1076
BanI GGYRCC 1 cut(s) 1291
BanII GRGCYC 2 cut(s) 624, 1245
BbrPI CACGTG 1 cut(s) 1469
BbsI GAAGAC 1 cut(s) 1278
Bbv12I GWGCWC 1 cut(s) 1245
BbvI GCAGC 5 cut(s) 385, 756, 776, 1447, 1484
BccI CCATC 8 cut(s) 513, 596, 704, 818, 1115, 1313, 1400, 1452
BcgI CGANNNNNNTGC 2 cut(s) 1048, 1082
BclI TGATCA 4 cut(s) 103, 171, 259, 1233
BcoDI GTCTC 2 cut(s) 860, 1404
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 4 cut(s) 24, 833, 1296, 1504
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 7 cut(s) 125, 399, 613, 770, 790, 1436, 1498
BlsI GCNGC 7 cut(s) 126, 400, 614, 771, 791, 1437, 1499
BmcAI AGTACT 1 cut(s) 140
Bme18I GGWCC 2 cut(s) 959, 1374
BmeT110I CYCGRG 1 cut(s) 931
BmgT120I GGNCC 3 cut(s) 959, 1374, 1412
BmiI GGNNCC 3 cut(s) 961, 1293, 1375
BmsI GCATC 2 cut(s) 1068, 1096
BpiI GAAGAC 1 cut(s) 1278
BsaAI YACGTR 1 cut(s) 1469
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 272, 616
BsaWI WCCGGW 1 cut(s) 1339
Bsc4I CCNNNNNNNGG 5 cut(s) 117, 1409, 1410, 1421, 1450
Bse118I RCCGGY 2 cut(s) 313, 1339
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 261
BseDI CCNNGG 2 cut(s) 272, 616
BseGI GGATG 3 cut(s) 21, 299, 1111
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 5 cut(s) 117, 1409, 1410, 1421, 1450
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 2 cut(s) 135, 174
BseSI GKGCMC 1 cut(s) 1076
BseXI GCAGC 5 cut(s) 385, 756, 776, 1447, 1484
BsgI GTGCAG 2 cut(s) 775, 1483
Bsh1236I CGCG 1 cut(s) 1117
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 2 cut(s) 464, 1414
BshNI GGYRCC 1 cut(s) 1291
BshTI ACCGGT 1 cut(s) 1339
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 1245
BsiHKCI CYCGRG 1 cut(s) 931
BsiSI CCGG 2 cut(s) 314, 1340
BslFI GGGAC 2 cut(s) 945, 1387
BslI CCNNNNNNNGG 5 cut(s) 117, 1409, 1410, 1421, 1450
BsmAI GTCTC 2 cut(s) 860, 1404
BsmBI CGTCTC 1 cut(s) 1404
BsmFI GGGAC 2 cut(s) 945, 1387
BsmI GAATGC 2 cut(s) 319, 828
BsnI GGCC 2 cut(s) 464, 1414
BsoBI CYCGRG 1 cut(s) 931
Bsp1286I GDGCHC 3 cut(s) 624, 1076, 1245
Bsp143I GATC 8 cut(s) 103, 171, 259, 426, 484, 514, 565, 1233
BspACI CCGC 5 cut(s) 118, 125, 226, 613, 1410
BspANI GGCC 2 cut(s) 464, 1414
BspCNI CTCAG 1 cut(s) 299
BspFNI CGCG 1 cut(s) 1117
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 3 cut(s) 961, 1293, 1375
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 1291
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 2 cut(s) 313, 1339
BssAI RCCGGY 2 cut(s) 313, 1339
BssECI CCNNGG 2 cut(s) 272, 616
BssMI GATC 8 cut(s) 103, 171, 259, 426, 484, 514, 565, 1233
BssT1I CCWWGG 2 cut(s) 272, 616
Bst4CI ACNGT 4 cut(s) 739, 871, 976, 1477
Bst6I CTCTTC 2 cut(s) 47, 1010
BstBAI YACGTR 1 cut(s) 1469
BstC8I GCNNGC 2 cut(s) 624, 1412
BstDEI CTNAG 2 cut(s) 286, 882
BstF5I GGATG 3 cut(s) 21, 299, 1111
BstFNI CGCG 1 cut(s) 1117
BstKTI GATC 8 cut(s) 106, 174, 262, 429, 487, 517, 568, 1236
BstMAI GTCTC 2 cut(s) 860, 1404
BstMBI GATC 8 cut(s) 103, 171, 259, 426, 484, 514, 565, 1233
BstMCI CGRYCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 3 cut(s) 124, 407, 1181
BstNSI RCATGY 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 1076
BstUI CGCG 1 cut(s) 1117
BstV1I GCAGC 5 cut(s) 385, 756, 776, 1447, 1484
BstV2I GAAGAC 1 cut(s) 1278
BsuRI GGCC 2 cut(s) 464, 1414
BtsCI GGATG 3 cut(s) 21, 299, 1111
Cac8I GCNNGC 2 cut(s) 624, 1412
CciI TCATGA 1 cut(s) 195
Cfr10I RCCGGY 2 cut(s) 313, 1339
Cfr13I GGNCC 3 cut(s) 959, 1374, 1412
Csp6I GTAC 6 cut(s) 139, 688, 740, 994, 1358, 1473
CspAI ACCGGT 1 cut(s) 1339
CviQI GTAC 6 cut(s) 139, 688, 740, 994, 1358, 1473
DdeI CTNAG 2 cut(s) 286, 882
DpnI GATC 8 cut(s) 105, 173, 261, 428, 486, 516, 567, 1235
DpnII GATC 8 cut(s) 103, 171, 259, 426, 484, 514, 565, 1233
DraI TTTAAA 1 cut(s) 813
Eam1104I CTCTTC 2 cut(s) 47, 1010
EarI CTCTTC 2 cut(s) 47, 1010
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 1243
Eco130I CCWWGG 2 cut(s) 272, 616
Eco24I GRGCYC 2 cut(s) 624, 1245
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 959, 1374
Eco53kI GAGCTC 1 cut(s) 1243
Eco72I CACGTG 1 cut(s) 1469
Eco88I CYCGRG 1 cut(s) 931
EcoICRI GAGCTC 1 cut(s) 1243
EcoRI GAATTC 1 cut(s) 1253
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 272, 616
EcoT38I GRGCYC 2 cut(s) 624, 1245
ErhI CCWWGG 2 cut(s) 272, 616
Esp3I CGTCTC 1 cut(s) 1404
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 2 cut(s) 945, 1387
FauI CCCGC 1 cut(s) 1403
FbaI TGATCA 4 cut(s) 103, 171, 259, 1233
Fnu4HI GCNGC 7 cut(s) 125, 399, 613, 770, 790, 1436, 1498
FokI GGATG 3 cut(s) 28, 286, 1118
FriOI GRGCYC 2 cut(s) 624, 1245
Fsp4HI GCNGC 7 cut(s) 125, 399, 613, 770, 790, 1436, 1498
FspBI CTAG 4 cut(s) 24, 833, 1296, 1504
GluI GCNGC 7 cut(s) 125, 399, 613, 770, 790, 1436, 1498
HaeIII GGCC 2 cut(s) 464, 1414
HapII CCGG 2 cut(s) 314, 1340
HincII GTYRAC 3 cut(s) 21, 453, 979
HindII GTYRAC 3 cut(s) 21, 453, 979
HinfI GANTC 4 cut(s) 284, 797, 1139, 1283
HpaI GTTAAC 1 cut(s) 979
HpaII CCGG 2 cut(s) 314, 1340
HphI GGTGA 4 cut(s) 113, 200, 833, 1354
Hpy166II GTNNAC 5 cut(s) 21, 453, 979, 996, 1048
Hpy188I TCNGA 2 cut(s) 289, 601
Hpy188III TCNNGA 3 cut(s) 196, 1231, 1403
Hpy8I GTNNAC 5 cut(s) 21, 453, 979, 996, 1048
Hpy99I CGWCG 2 cut(s) 667, 1117
HpyAV CCTTC 2 cut(s) 812, 1500
HpyCH4III ACNGT 4 cut(s) 739, 871, 976, 1477
HpyCH4IV ACGT 5 cut(s) 219, 449, 662, 1112, 1468
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 407, 1181
HpyF3I CTNAG 2 cut(s) 286, 882
HpySE526I ACGT 5 cut(s) 219, 449, 662, 1112, 1468
Ksp22I TGATCA 4 cut(s) 103, 171, 259, 1233
KspAI GTTAAC 1 cut(s) 979
Kzo9I GATC 8 cut(s) 103, 171, 259, 426, 484, 514, 565, 1233
LmnI GCTCC 5 cut(s) 602, 704, 924, 1248, 1492
Lsp1109I GCAGC 5 cut(s) 385, 756, 776, 1447, 1484
LweI GCATC 2 cut(s) 1068, 1096
MaeI CTAG 4 cut(s) 24, 833, 1296, 1504
MaeII ACGT 5 cut(s) 219, 449, 662, 1112, 1468
MaeIII GTNAC 5 cut(s) 413, 778, 848, 1025, 1363
MalI GATC 8 cut(s) 105, 173, 261, 428, 486, 516, 567, 1235
MboI GATC 8 cut(s) 103, 171, 259, 426, 484, 514, 565, 1233
MboII GAAGA 6 cut(s) 34, 505, 508, 1027, 1096, 1278
MfeI CAATTG 1 cut(s) 783
MhlI GDGCHC 3 cut(s) 624, 1076, 1245
MlyI GAGTC 3 cut(s) 278, 806, 1292
MseI TTAA 3 cut(s) 530, 812, 978
MslI CAYNNNNRTG 3 cut(s) 90, 213, 507
MspA1I CMGCKG 1 cut(s) 1497
MspI CCGG 2 cut(s) 314, 1340
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 2 cut(s) 319, 828
MvnI CGCG 1 cut(s) 1117
MwoI GCNNNNNNNGC 3 cut(s) 124, 407, 1181
NdeII GATC 8 cut(s) 103, 171, 259, 426, 484, 514, 565, 1233
NlaIV GGNNCC 3 cut(s) 961, 1293, 1375
NmeAIII GCCGAG 1 cut(s) 889
NmuCI GTSAC 3 cut(s) 413, 778, 1363
NspI RCATGY 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 931
PagI TCATGA 1 cut(s) 195
PctI GAATGC 2 cut(s) 319, 828
PfeI GAWTC 1 cut(s) 1139
PinAI ACCGGT 1 cut(s) 1339
PkrI GCNGC 7 cut(s) 126, 400, 614, 771, 791, 1437, 1499
Ple19I CGATCG 1 cut(s) 487
PleI GAGTC 3 cut(s) 278, 805, 1291
PmaCI CACGTG 1 cut(s) 1469
PmlI CACGTG 1 cut(s) 1469
PpsI GAGTC 3 cut(s) 278, 805, 1291
Ppu21I YACGTR 1 cut(s) 1469
PshBI ATTAAT 1 cut(s) 530
PsiI TTATAA 1 cut(s) 642
Psp124BI GAGCTC 1 cut(s) 1245
Psp1406I AACGTT 1 cut(s) 449
PspCI CACGTG 1 cut(s) 1469
PspN4I GGNNCC 3 cut(s) 961, 1293, 1375
PspPI GGNCC 3 cut(s) 959, 1374, 1412
PspXI VCTCGAGB 1 cut(s) 931
PstI CTGCAG 1 cut(s) 403
PvuI CGATCG 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 1497
RsaI GTAC 6 cut(s) 140, 689, 741, 995, 1359, 1474
RsaNI GTAC 6 cut(s) 139, 688, 740, 994, 1358, 1473
RseI CAYNNNNRTG 3 cut(s) 90, 213, 507
SacI GAGCTC 1 cut(s) 1245
SaqAI TTAA 3 cut(s) 530, 812, 978
SatI GCNGC 7 cut(s) 125, 399, 613, 770, 790, 1436, 1498
Sau3AI GATC 8 cut(s) 103, 171, 259, 426, 484, 514, 565, 1233
Sau96I GGNCC 3 cut(s) 959, 1374, 1412
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 3 cut(s) 278, 806, 1292
SduI GDGCHC 3 cut(s) 624, 1076, 1245
SfaNI GCATC 2 cut(s) 1068, 1096
SfcI CTRYAG 1 cut(s) 399
Sfr274I CTCGAG 1 cut(s) 931
SgrAI CRCCGGYG 1 cut(s) 1339
SinI GGWCC 2 cut(s) 959, 1374
SlaI CTCGAG 1 cut(s) 931
SmiMI CAYNNNNRTG 3 cut(s) 90, 213, 507
SmlI CTYRAG 1 cut(s) 931
SmoI CTYRAG 1 cut(s) 931
SpeI ACTAGT 1 cut(s) 23
SsiI CCGC 5 cut(s) 118, 125, 226, 613, 1410
SspMI CTAG 4 cut(s) 24, 833, 1296, 1504
SstI GAGCTC 1 cut(s) 1245
StyI CCWWGG 2 cut(s) 272, 616
TaaI ACNGT 4 cut(s) 739, 871, 976, 1477
TaiI ACGT 5 cut(s) 222, 452, 665, 1115, 1471
TaqI TCGA 4 cut(s) 357, 575, 932, 1327
TatI WGTACW 1 cut(s) 138
TauI GCSGC 2 cut(s) 127, 615
TfiI GAWTC 1 cut(s) 1139
Tru1I TTAA 3 cut(s) 530, 812, 978
Tru9I TTAA 3 cut(s) 530, 812, 978
TseFI GTSAC 3 cut(s) 413, 778, 1363
TseI GCWGC 5 cut(s) 398, 769, 789, 1435, 1497
Tsp45I GTSAC 3 cut(s) 413, 778, 1363
TspDTI ATGAA 6 cut(s) 20, 34, 212, 263, 908, 1298
TspGWI ACGGA 1 cut(s) 1386
VpaK11BI GGWCC 2 cut(s) 959, 1374
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 4 cut(s) 554, 808, 1253, 1454
XceI RCATGY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 1098
XhoI CTCGAG 1 cut(s) 931
XspI CTAG 4 cut(s) 24, 833, 1296, 1504
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.