Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005873

Physical Location & Seq

Genomic Coordinates Reverse (-)

78116483 .. 78119209

Gene Structure 2727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAGGGGAGGCCAAACGCATTCCTCTTCATCATTTTCTTTCTCTCTGCCCTTCACGGGATTTTCTCTGTTCATTCATTTCTCAATGAATTGAAACAAGACGAACCCATGAGATTGGAGCTCATTCACAGGCACTCTCCGACGCTCAATGAGCATGGTTTGCGTGACGAAATGCCGAAAACGCAGCTAGAACTCATTGAAGAGCTCCATCGCCACGACCTCATTCGCCAACAAATGATCTCCCGCAAGAGGCAACACCACCATCATCACATTCAAACTGGCCTAAGGAGAAATGCATTGGCAACAGCTTCCATTGCAATGCCATTGAGTTCGGGTTGGGATTTCGGTGTCGGGCAGTACCTTGTTCAGGTTAAAGTGGGAACACCTTCACAGAGATTCCTGTTGATTGCAGACACAGGGAGTGACTTGACATGGATGAAGTGCAAGTACCGGTGCGGTGAGAAATGTGGGCTGAAAAGAGCAAAGATGAAGAAGAACAAGAAGAAGGTGTTTCGAGCCACTCAATCTTCAACCTTCAAAACTATCCCTTGCTCTTCTGAGATGTGCAAGTTCGAGCTTGACTTCTCTCTCACAAGATGTCCAACCCCATTGAGCCCTTGCAAATATGATTATAGGTACGCAGAAAAATCTGGTGCATTGGGCTTCTTTGCGAATGAGACTGTAAGAGTACCCCTTACGAATGGTAGGAGCGCGAAGCTGAATGATGTGCTAATTGGCTGCACAGAGTCCATCGAGGGCCCTAAAGAGGCAAGCATCTGGGGAGGTGATGGGATATTGGGTCTAGGGTTCAGCAAGCACTCATTCGTTGCGAAAGCTGCTTCAAACTTGGGTGACAAGTTTTCCTATTGCCTAATTGATCACATGAGCAACAAGAATGTGTCAAGCTATCTCACATTTGGTGGAAGTGCTGAACCCGCACTGCGAAACAGCATGCGTTACACAAAGCTTGCTTTGGGTGGCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009743 GO:0009744 GO:0009888 GO:0009987 GO:0010019 GO:0010033 GO:0010073 GO:0010074 GO:0010492 GO:0016787 GO:0019538 GO:0019827 GO:0023052 GO:0030163 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048511 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070001 GO:0070011 GO:0071704 GO:0098727 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

328

Amino Acids

36.86

Weight (kDa)

9.55

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	119 - 278	4.5e-10	Eukaryotic aspartyl protease
TAXi_N	PF14543	120 - 308	1.2e-45	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12700 AT3G12700 AT3G12700
fragaria_vesca	FvH4_3g13820 FvH4_5g37920
malus_domestica	MD05G1240800.v1.1 MD10G1219200.v1.1
prunus_persica	Prupe.4G124800_v2.0.a1
pyrus_communis	pycom05g21700 pycom10g18470
rosa_chinensis	RchiOBHm_Chr5g0023001 RchiOBHm_Chr7g0239861
rosa_laevigata	RLG00000000724 RLG00000032688
rosa_roxburghii	Rroxscaffold_1G00056340 Rroxscaffold_3G00220750
rosa_rugosa	Rorug05G0076400 Rorug07G0330600
rosa_samantha	Rh5AG162600 Rh5BG161800 Rh5CG176500 Rh5DG163200 Rh7AG484100 Rh7BG457200 Rh7CG501600 Rh7DG469800
rosa_wichuraiana	Rw5G014650 Rw7G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	713
AciI	CCGC	3 cut(s)	244, 456, 936
AfaI	GTAC	4 cut(s)	359, 449, 638, 690
AfiI	CCNNNNNNNGG	4 cut(s)	57, 249, 367, 766
AgeI	ACCGGT	1 cut(s)	450
AgsI	TTSAA	6 cut(s)	94, 200, 275, 531, 538, 843
AluBI	AGCT	9 cut(s)	121, 187, 205, 308, 577, 718, 836, 906, 967
AluI	AGCT	9 cut(s)	121, 187, 205, 308, 577, 718, 836, 906, 967
Alw21I	GWGCWC	2 cut(s)	123, 207
Alw26I	GTCTC	1 cut(s)	671
AoxI	GGCC	4 cut(s)	11, 280, 757, 979
ApaI	GGGCCC	1 cut(s)	761
ApeKI	GCWGC	3 cut(s)	184, 738, 836
AsiGI	ACCGGT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	3 cut(s)	757, 758, 980
AsuHPI	GGTGA	3 cut(s)	470, 797, 863
AxyI	CCTNAGG	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	761
BanII	GRGCYC	4 cut(s)	123, 207, 617, 761
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
Bbv12I	GWGCWC	2 cut(s)	123, 207
BbvI	GCAGC	3 cut(s)	196, 725, 823
BccI	CCATC	4 cut(s)	216, 270, 758, 782
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	2 cut(s)	188, 803
BisI	GCNGC	3 cut(s)	185, 739, 837
BlsI	GCNGC	3 cut(s)	186, 740, 838
BmgT120I	GGNCC	3 cut(s)	757, 758, 980
BmiI	GGNNCC	2 cut(s)	759, 982
BmsI	GCATC	1 cut(s)	783
BsaWI	WCCGGW	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 249, 367, 766
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	284
Bse3DI	GCAATG	2 cut(s)	312, 324
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	4 cut(s)	57, 249, 367, 766
BseMI	GCAATG	2 cut(s)	312, 324
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	761
BseXI	GCAGC	3 cut(s)	196, 725, 823
BsgI	GTGCAG	1 cut(s)	724
Bsh1236I	CGCG	1 cut(s)	713
BshFI	GGCC	4 cut(s)	13, 282, 759, 981
BshTI	ACCGGT	1 cut(s)	450
BsiHKAI	GWGCWC	2 cut(s)	123, 207
BsiSI	CCGG	1 cut(s)	451
BslI	CCNNNNNNNGG	4 cut(s)	57, 249, 367, 766
BsmAI	GTCTC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	13, 282, 759, 981
Bsp120I	GGGCCC	1 cut(s)	757
Bsp1286I	GDGCHC	4 cut(s)	123, 207, 617, 761
Bsp143I	GATC	2 cut(s)	237, 877
BspACI	CCGC	3 cut(s)	244, 456, 936
BspANI	GGCC	4 cut(s)	13, 282, 759, 981
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	713
BspLI	GGNNCC	2 cut(s)	759, 982
BspQI	GCTCTTC	2 cut(s)	195, 559
BsrDI	GCAATG	2 cut(s)	312, 324
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	450
BssMI	GATC	2 cut(s)	237, 877
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	3 cut(s)	32, 195, 559
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	4 cut(s)	772, 815, 953, 969
BstDEI	CTNAG	2 cut(s)	284, 558
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	2 cut(s)	240, 880
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	2 cut(s)	237, 877
BstMWI	GCNNNNNNNGC	6 cut(s)	151, 160, 181, 314, 836, 935
BstNSI	RCATGY	1 cut(s)	955
BstSLI	GKGCMC	1 cut(s)	761
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	196, 725, 823
BstXI	CCANNNNNNTGG	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	284
BsuRI	GGCC	4 cut(s)	13, 282, 759, 981
BtgZI	GCGATG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	441
BtsI	GCAGTG	1 cut(s)	938
BtsIMutI	CAGTG	1 cut(s)	938
Cac8I	GCNNGC	4 cut(s)	772, 815, 953, 969
CfoI	GCGC	1 cut(s)	713
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	3 cut(s)	757, 758, 980
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	4 cut(s)	358, 448, 637, 689
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	5 cut(s)	109, 155, 432, 883, 952
CviQI	GTAC	4 cut(s)	358, 448, 637, 689
DdeI	CTNAG	2 cut(s)	284, 558
DpnI	GATC	2 cut(s)	239, 879
DpnII	GATC	2 cut(s)	237, 877
Eam1104I	CTCTTC	3 cut(s)	32, 195, 559
EarI	CTCTTC	3 cut(s)	32, 195, 559
Ecl136II	GAGCTC	2 cut(s)	121, 205
Eco24I	GRGCYC	4 cut(s)	123, 207, 617, 761
Eco53kI	GAGCTC	2 cut(s)	121, 205
Eco81I	CCTNAGG	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	121, 205
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	2 cut(s)	757, 758
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	4 cut(s)	123, 207, 617, 761
FaeI	CATG	5 cut(s)	112, 158, 435, 886, 955
FaiI	YATR	7 cut(s)	110, 156, 433, 627, 633, 884, 953
FatI	CATG	5 cut(s)	108, 154, 431, 882, 951
FauI	CCCGC	2 cut(s)	251, 943
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	3 cut(s)	185, 739, 837
FokI	GGATG	1 cut(s)	448
FriOI	GRGCYC	4 cut(s)	123, 207, 617, 761
Fsp4HI	GCNGC	3 cut(s)	185, 739, 837
FspBI	CTAG	2 cut(s)	188, 803
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	3 cut(s)	185, 739, 837
HaeIII	GGCC	4 cut(s)	13, 282, 759, 981
HapII	CCGG	1 cut(s)	451
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	5 cut(s)	112, 158, 435, 886, 955
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HindIII	AAGCTT	1 cut(s)	965
HinfI	GANTC	2 cut(s)	396, 746
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	3 cut(s)	470, 797, 863
Hpy188I	TCNGA	2 cut(s)	141, 559
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	4 cut(s)	62, 396, 499, 544
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4V	TGCA	8 cut(s)	296, 317, 410, 444, 567, 621, 656, 741
HpyF10VI	GCNNNNNNNGC	6 cut(s)	151, 160, 181, 314, 836, 935
HpyF3I	CTNAG	2 cut(s)	284, 558
Hsp92II	CATG	5 cut(s)	112, 158, 435, 886, 955
HspAI	GCGC	1 cut(s)	711
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	2 cut(s)	237, 877
LguI	GCTCTTC	2 cut(s)	195, 559
LmnI	GCTCC	3 cut(s)	118, 210, 708
LpnPI	CCDG	8 cut(s)	115, 264, 353, 402, 413, 464, 636, 763
Lsp1109I	GCAGC	3 cut(s)	196, 725, 823
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	2 cut(s)	188, 803
MaeIII	GTNAC	4 cut(s)	164, 422, 851, 956
MalI	GATC	2 cut(s)	239, 879
MboI	GATC	2 cut(s)	237, 877
MboII	GAAGA	7 cut(s)	19, 212, 502, 505, 514, 519, 546
MhlI	GDGCHC	4 cut(s)	123, 207, 617, 761
MluCI	AATT	3 cut(s)	89, 732, 873
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	2 cut(s)	164, 626
MnlI	CCTC	7 cut(s)	3, 35, 230, 243, 748, 760, 776
Mph1103I	ATGCAT	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	451
Mva1269I	GAATGC	1 cut(s)	20
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	6 cut(s)	151, 160, 181, 314, 836, 935
NdeII	GATC	2 cut(s)	237, 877
NlaIII	CATG	5 cut(s)	112, 158, 435, 886, 955
NlaIV	GGNNCC	2 cut(s)	759, 982
NmuCI	GTSAC	3 cut(s)	164, 422, 851
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	1 cut(s)	955
PaeI	GCATGC	1 cut(s)	955
PciSI	GCTCTTC	2 cut(s)	195, 559
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	396
PinAI	ACCGGT	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	186, 740, 838
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
Psp124BI	GAGCTC	2 cut(s)	123, 207
PspN4I	GGNNCC	2 cut(s)	759, 982
PspOMI	GGGCCC	1 cut(s)	757
PspPI	GGNCC	3 cut(s)	757, 758, 980
RsaI	GTAC	4 cut(s)	359, 449, 638, 690
RsaNI	GTAC	4 cut(s)	358, 448, 637, 689
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	2 cut(s)	123, 207
SapI	GCTCTTC	2 cut(s)	195, 559
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	185, 739, 837
Sau3AI	GATC	2 cut(s)	237, 877
Sau96I	GGNCC	3 cut(s)	757, 758, 980
SchI	GAGTC	1 cut(s)	755
SduI	GDGCHC	4 cut(s)	123, 207, 617, 761
SfaNI	GCATC	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	955
Sse9I	AATT	3 cut(s)	89, 732, 873
SsiI	CCGC	3 cut(s)	244, 456, 936
SspMI	CTAG	2 cut(s)	188, 803
SstI	GAGCTC	2 cut(s)	123, 207
TaaI	ACNGT	1 cut(s)	682
TaqI	TCGA	3 cut(s)	514, 573, 753
TasI	AATT	3 cut(s)	89, 732, 873
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	945
TseFI	GTSAC	3 cut(s)	164, 422, 851
TseI	GCWGC	3 cut(s)	184, 738, 836
Tsp45I	GTSAC	3 cut(s)	164, 422, 851
TspDTI	ATGAA	7 cut(s)	17, 19, 62, 66, 102, 452, 503
TspRI	CASTG	1 cut(s)	945
XagI	CCTNNNNNAGG	1 cut(s)	365
XceI	RCATGY	1 cut(s)	955
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	2 cut(s)	188, 803
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.