Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005873

Physical Location & Seq

Genomic Coordinates Forward (+)

17827520 .. 17830770

Gene Structure 3251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032688

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGAAGGGAAGGCCAAACGCATTCCTCTTCATCATCTTCTTGCTCTCTGCCCTTCACGGGATTTTCTCTGTTCATTCATTTCTCAATGAATTGAAACAAGACGAACCCATGAGATTAGAGCTCATTCACAGGCACTCTCCGAAGCTCAATGGACATGGTTTGCGTGACGAAATGCCGAAAACCCAGCTAGAACTCATCGAAGAGCTCCACCGCCACGACCTCATTCGCCAACAAATGATCTCCCGCAAGAGGCAACACCACCATCATCACATTCAAACTGGCCTAAGGAGAAATGCATTGGAAACAGCTTCCATTGCAATGCCATTGAGTTCGGGTTGGGATTTCGGTGTCGGCCAGTACCTTGTTCAGTTTAAAGTGGGAACACCTTCACAGAGATTCCTGTTGATTGCAGACACAGGGAGTGACTTGACATGGATGAAGTGCAAGTACCGGTGCGGTGAGAAATGTGGGTTGAAAAGAGCAAAGATGAAGAAGAACAAGAATAAGGTGTTTCGTGCCATTCAATCTTCAACCTTCAAAACTATCCCTTGCTCTTCTGAGATGTGCAAGTTCGAGCTTGACTTCTCTCTCACAATATGTCCAACCCCATTGAGCCCTTGCAAGTATGATTATAGGTACGCAGAAAAATCTAGTGCATTGGGCTTCTTTGCGAATGAGACTGTAAGAGTACCCCTTACGAATGGTAGGAGCGCGAAGCTGAATGATGTGCTAATTGGCTGCACAGAGTCCATCGAGGGCCCGAAAGAGGCAAGCATCTGGGGAGGTGATGGGATATTGGGTCTAGGGTTCAGCAAGCACTCATTCGTTGCGAAAGCTGCTTCAAACTTGGGTGACAAGTTTTCCTATTGCCTAATTGATCACATGAGCAACAAGAATGTGTCAAGCTATCTCACATTTGGTGGAAGTGCTGAACCCGCACTGCGAAACAGCGTGAGGTACACAAAGCTTGCTTTGGGTGGCCCTAAAATTGGCCCATTTTACGCTGTAAACTTGGTGGGGATATCAGTCGGGGGCAAAATGCTAAAGATACCAAATGAAGTGTGGGTTGAAAACCTCGGTGGTGGAACAATTGTTGATTCAGGCACAAGCCTCACGTTTCTAACCTCACCAGCTTACATACCTGTCATGGCTGAATTGACAATGGCTTTGTCCAAGTACAAAAAAATACCGTTGGACGCATTTGAGTTCTGCTTCAATTCCACTGGTTATGATGAGTCTTCAGTGCCGAGATTTGCAGTTCATTTTGCAGATGGAGCTAAATTTGAGCCCCCAGTGAAGAGCTATGTTATTGATGTTGCTGTACAGACAAAGTGTCTAGGGTTTATGTCAGCTATATTTCCTGGCACCATTGTTATTGGCAACATAATGCAACAAAATTATTTGTGGGAATTCGATTTGCGGGGAGGTACATTGGGTTTTGCTCCTTCAAGCTGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009743 GO:0009744 GO:0009888 GO:0009987 GO:0010019 GO:0010033 GO:0010073 GO:0010074 GO:0010492 GO:0016787 GO:0019538 GO:0019827 GO:0023052 GO:0030163 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048511 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070001 GO:0070011 GO:0071704 GO:0098727 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

487

Amino Acids

53.9

Weight (kDa)

9.14

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	119 - 482	1.5e-19	Eukaryotic aspartyl protease
TAXi_N	PF14543	120 - 308	2.9e-44	Xylanase inhibitor N-terminal
TAXi_C	PF14541	334 - 481	2.6e-33	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12700 AT3G12700 AT3G12700
fragaria_vesca	FvH4_3g13820 FvH4_5g37920
malus_domestica	MD05G1240800.v1.1 MD10G1219200.v1.1
prunus_persica	Prupe.4G124800_v2.0.a1
pyrus_communis	pycom05g21700 pycom10g18470
rosa_chinensis	RchiOBHm_Chr5g0023001 RchiOBHm_Chr7g0239861
rosa_laevigata	RLG00000000724 RLG00000032688
rosa_roxburghii	Rroxscaffold_1G00056340 Rroxscaffold_3G00220750
rosa_rugosa	Rorug05G0076400 Rorug07G0330600
rosa_samantha	Rh5AG162600 Rh5BG161800 Rh5CG176500 Rh5DG163200 Rh7AG484100 Rh7BG457200 Rh7CG501600 Rh7DG469800
rosa_wichuraiana	Rw5G014650 Rw7G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1364
AccII	CGCG	1 cut(s)	713
AciI	CCGC	5 cut(s)	211, 244, 456, 936, 1420
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	1280, 1409
AcuI	CTGAAG	1 cut(s)	1224
AfaI	GTAC	8 cut(s)	359, 449, 638, 690, 959, 1178, 1323, 1429
AfiI	CCNNNNNNNGG	4 cut(s)	57, 249, 766, 989
AgeI	ACCGGT	1 cut(s)	450
AhdI	GACNNNNNGTC	1 cut(s)	1332
AjnI	CCWGG	1 cut(s)	1360
Alw21I	GWGCWC	2 cut(s)	123, 207
Alw26I	GTCTC	1 cut(s)	671
AoxI	GGCC	6 cut(s)	11, 280, 352, 757, 979, 991
ApaI	GGGCCC	1 cut(s)	761
ApeKI	GCWGC	3 cut(s)	738, 836, 1452
ApoI	RAATTY	2 cut(s)	1280, 1409
ArsI	GACNNNNNNTTYG	2 cut(s)	1150, 1182
AsiGI	ACCGGT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	4 cut(s)	757, 758, 980, 992
AsuHPI	GGTGA	4 cut(s)	470, 797, 863, 1119
AxyI	CCTNAGG	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	1364
BanII	GRGCYC	5 cut(s)	123, 207, 617, 761, 1290
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
BbsI	GAAGAC	1 cut(s)	1230
Bbv12I	GWGCWC	2 cut(s)	123, 207
BbvI	GCAGC	3 cut(s)	725, 823, 1439
BccI	CCATC	4 cut(s)	270, 758, 782, 1265
BciT130I	CCWGG	1 cut(s)	1362
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	5 cut(s)	188, 651, 803, 1337, 1459
BisI	GCNGC	3 cut(s)	739, 837, 1453
BlsI	GCNGC	3 cut(s)	740, 838, 1454
Bme1390I	CCNGG	1 cut(s)	1362
BmeRI	GACNNNNNGTC	1 cut(s)	1332
BmgT120I	GGNCC	4 cut(s)	757, 758, 980, 992
BmiI	GGNNCC	2 cut(s)	759, 1366
BmrFI	CCNGG	1 cut(s)	1362
BmrI	ACTGGG	1 cut(s)	1286
BmsI	GCATC	1 cut(s)	783
BmuI	ACTGGG	1 cut(s)	1286
BpiI	GAAGAC	1 cut(s)	1230
BsaJI	CCNNGG	1 cut(s)	1075
BsaWI	WCCGGW	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 249, 766, 989
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	4 cut(s)	283, 355, 1228, 1292
Bse21I	CCTNAGG	1 cut(s)	284
Bse3DI	GCAATG	2 cut(s)	312, 324
BseBI	CCWGG	1 cut(s)	1362
BseDI	CCNNGG	1 cut(s)	1075
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	4 cut(s)	57, 249, 766, 989
BseMI	GCAATG	2 cut(s)	312, 324
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	4 cut(s)	283, 355, 1228, 1292
BseSI	GKGCMC	1 cut(s)	761
BseXI	GCAGC	3 cut(s)	725, 823, 1439
BseYI	CCCAGC	1 cut(s)	183
BsgI	GTGCAG	2 cut(s)	724, 1438
Bsh1236I	CGCG	1 cut(s)	713
BshFI	GGCC	6 cut(s)	13, 282, 354, 759, 981, 993
BshNI	GGYRCC	1 cut(s)	1364
BshTI	ACCGGT	1 cut(s)	450
BsiHKAI	GWGCWC	2 cut(s)	123, 207
BsiSI	CCGG	1 cut(s)	451
BslI	CCNNNNNNNGG	4 cut(s)	57, 249, 766, 989
BsmAI	GTCTC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	6 cut(s)	13, 282, 354, 759, 981, 993
Bsp120I	GGGCCC	1 cut(s)	757
Bsp1286I	GDGCHC	5 cut(s)	123, 207, 617, 761, 1290
Bsp1407I	TGTACA	1 cut(s)	1321
Bsp143I	GATC	2 cut(s)	237, 877
BspACI	CCGC	5 cut(s)	211, 244, 456, 936, 1420
BspANI	GGCC	6 cut(s)	13, 282, 354, 759, 981, 993
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	713
BspLI	GGNNCC	2 cut(s)	759, 1366
BspQI	GCTCTTC	3 cut(s)	195, 559, 1292
BspT107I	GGYRCC	1 cut(s)	1364
BsrDI	GCAATG	2 cut(s)	312, 324
BsrFI	RCCGGY	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	1321
BsrI	ACTGG	4 cut(s)	283, 355, 1228, 1292
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	1075
BssMI	GATC	2 cut(s)	237, 877
Bst2UI	CCWGG	1 cut(s)	1362
Bst4CI	ACNGT	2 cut(s)	682, 1191
Bst6I	CTCTTC	4 cut(s)	32, 195, 559, 1292
BstAUI	TGTACA	1 cut(s)	1321
BstC8I	GCNNGC	3 cut(s)	772, 815, 969
BstDEI	CTNAG	2 cut(s)	284, 558
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	2 cut(s)	240, 880
BstMAI	GTCTC	1 cut(s)	671
BstMBI	GATC	2 cut(s)	237, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 836, 935, 1274
BstNI	CCWGG	1 cut(s)	1362
BstSCI	CCNGG	1 cut(s)	1360
BstSLI	GKGCMC	1 cut(s)	761
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	725, 823, 1439
BstV2I	GAAGAC	1 cut(s)	1230
Bsu36I	CCTNAGG	1 cut(s)	284
BsuRI	GGCC	6 cut(s)	13, 282, 354, 759, 981, 993
BtsCI	GGATG	1 cut(s)	441
BtsI	GCAGTG	1 cut(s)	938
BtsIMutI	CAGTG	4 cut(s)	938, 1221, 1248, 1299
Cac8I	GCNNGC	3 cut(s)	772, 815, 969
CfoI	GCGC	1 cut(s)	713
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	4 cut(s)	757, 758, 980, 992
CseI	GACGC	1 cut(s)	1205
Csp6I	GTAC	8 cut(s)	358, 448, 637, 689, 958, 1177, 1322, 1428
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	5 cut(s)	109, 155, 432, 883, 1147
CviQI	GTAC	8 cut(s)	358, 448, 637, 689, 958, 1177, 1322, 1428
DdeI	CTNAG	2 cut(s)	284, 558
DpnI	GATC	2 cut(s)	239, 879
DpnII	GATC	2 cut(s)	237, 877
DraI	TTTAAA	1 cut(s)	373
DriI	GACNNNNNGTC	1 cut(s)	1332
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	4 cut(s)	32, 195, 559, 1292
Eam1105I	GACNNNNNGTC	1 cut(s)	1332
EarI	CTCTTC	4 cut(s)	32, 195, 559, 1292
Ecl136II	GAGCTC	2 cut(s)	121, 205
Eco24I	GRGCYC	5 cut(s)	123, 207, 617, 761, 1290
Eco32I	GATATC	1 cut(s)	1023
Eco53kI	GAGCTC	2 cut(s)	121, 205
Eco57I	CTGAAG	1 cut(s)	1224
Eco81I	CCTNAGG	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	121, 205
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRI	GAATTC	1 cut(s)	1409
EcoRII	CCWGG	1 cut(s)	1360
EcoRV	GATATC	1 cut(s)	1023
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	5 cut(s)	123, 207, 617, 761, 1290
FaeI	CATG	5 cut(s)	112, 158, 435, 886, 1150
FatI	CATG	5 cut(s)	108, 154, 431, 882, 1146
FauI	CCCGC	3 cut(s)	251, 943, 1413
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	3 cut(s)	739, 837, 1453
FokI	GGATG	1 cut(s)	448
FriOI	GRGCYC	5 cut(s)	123, 207, 617, 761, 1290
Fsp4HI	GCNGC	3 cut(s)	739, 837, 1453
FspBI	CTAG	5 cut(s)	188, 651, 803, 1337, 1459
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	3 cut(s)	739, 837, 1453
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	6 cut(s)	13, 282, 354, 759, 981, 993
HapII	CCGG	1 cut(s)	451
HgaI	GACGC	1 cut(s)	1205
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	5 cut(s)	112, 158, 435, 886, 1150
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HindIII	AAGCTT	1 cut(s)	965
HinfI	GANTC	4 cut(s)	396, 746, 1097, 1235
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	4 cut(s)	470, 797, 863, 1119
Hpy166II	GTNNAC	2 cut(s)	960, 1009
Hpy188I	TCNGA	2 cut(s)	141, 559
Hpy8I	GTNNAC	2 cut(s)	960, 1009
HpyAV	CCTTC	5 cut(s)	3, 62, 396, 544, 1455
HpyCH4III	ACNGT	2 cut(s)	682, 1191
HpyCH4IV	ACGT	1 cut(s)	1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 836, 935, 1274
HpyF3I	CTNAG	2 cut(s)	284, 558
HpySE526I	ACGT	1 cut(s)	1115
Hsp92II	CATG	5 cut(s)	112, 158, 435, 886, 1150
HspAI	GCGC	1 cut(s)	711
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	2 cut(s)	237, 877
LguI	GCTCTTC	3 cut(s)	195, 559, 1292
LmnI	GCTCC	4 cut(s)	210, 708, 1274, 1447
Lsp1109I	GCAGC	3 cut(s)	725, 823, 1439
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	5 cut(s)	188, 651, 803, 1337, 1459
MaeII	ACGT	1 cut(s)	1115
MaeIII	GTNAC	3 cut(s)	164, 422, 851
MalI	GATC	2 cut(s)	239, 879
MboI	GATC	2 cut(s)	237, 877
MboII	GAAGA	9 cut(s)	19, 28, 212, 502, 505, 519, 546, 1230, 1309
MfeI	CAATTG	1 cut(s)	1089
MhlI	GDGCHC	5 cut(s)	123, 207, 617, 761, 1290
MlyI	GAGTC	2 cut(s)	755, 1244
MmeI	TCCRAC	2 cut(s)	626, 1173
Mph1103I	ATGCAT	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	1 cut(s)	1362
MunI	CAATTG	1 cut(s)	1089
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	1362
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	4 cut(s)	314, 836, 935, 1274
NdeII	GATC	2 cut(s)	237, 877
NlaIII	CATG	5 cut(s)	112, 158, 435, 886, 1150
NlaIV	GGNNCC	2 cut(s)	759, 1366
NmeAIII	GCCGAG	1 cut(s)	1272
NmuCI	GTSAC	3 cut(s)	164, 422, 851
NsiI	ATGCAT	1 cut(s)	298
PciSI	GCTCTTC	3 cut(s)	195, 559, 1292
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	396, 1097
PinAI	ACCGGT	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	740, 838, 1454
PleI	GAGTC	2 cut(s)	754, 1243
PpsI	GAGTC	2 cut(s)	754, 1243
Psp124BI	GAGCTC	2 cut(s)	123, 207
Psp6I	CCWGG	1 cut(s)	1360
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	1360
PspN4I	GGNNCC	2 cut(s)	759, 1366
PspOMI	GGGCCC	1 cut(s)	757
PspPI	GGNCC	4 cut(s)	757, 758, 980, 992
RsaI	GTAC	8 cut(s)	359, 449, 638, 690, 959, 1178, 1323, 1429
RsaNI	GTAC	8 cut(s)	358, 448, 637, 689, 958, 1177, 1322, 1428
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	2 cut(s)	123, 207
SapI	GCTCTTC	3 cut(s)	195, 559, 1292
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	739, 837, 1453
Sau3AI	GATC	2 cut(s)	237, 877
Sau96I	GGNCC	4 cut(s)	757, 758, 980, 992
SchI	GAGTC	2 cut(s)	755, 1244
ScrFI	CCNGG	1 cut(s)	1362
SduI	GDGCHC	5 cut(s)	123, 207, 617, 761, 1290
SfaNI	GCATC	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	317
SsiI	CCGC	5 cut(s)	211, 244, 456, 936, 1420
SspMI	CTAG	5 cut(s)	188, 651, 803, 1337, 1459
SstI	GAGCTC	2 cut(s)	123, 207
StyD4I	CCNGG	1 cut(s)	1360
TaaI	ACNGT	2 cut(s)	682, 1191
TaiI	ACGT	1 cut(s)	1118
TaqI	TCGA	4 cut(s)	198, 573, 753, 1413
TatI	WGTACW	2 cut(s)	1176, 1321
TfiI	GAWTC	2 cut(s)	396, 1097
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	4 cut(s)	945, 1228, 1248, 1299
TseFI	GTSAC	3 cut(s)	164, 422, 851
TseI	GCWGC	3 cut(s)	738, 836, 1452
Tsp45I	GTSAC	3 cut(s)	164, 422, 851
TspDTI	ATGAA	9 cut(s)	17, 19, 62, 66, 102, 452, 503, 1071, 1250
TspRI	CASTG	4 cut(s)	945, 1228, 1248, 1299
XapI	RAATTY	2 cut(s)	1280, 1409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1059
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	5 cut(s)	188, 651, 803, 1337, 1459
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.