Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005873

Physical Location & Seq

Genomic Coordinates Forward (+)

6564180 .. 6566500

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0076400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACGGCCTGCTTGTTCCTAAATCTGCCACTTTCTTCCTCATCTGCTTCCTTTACTTCTCAAACTAATAAGAATAACCCAGCAGTTTCTTCACACTCACTTCTCACTCTAATCCCAACCCAATTCCCTCTTCGAACCCCTCGATTCTCACGCCAAATCAGAGCCGCATCGACTGCCATGGAAGCCCAGAAAAGTGAGACCAGCGGCTCAGCTCAACCTATGAAGCTCTTGTTCGTGGAGATGGGTGTGGGCTACGACCAACATGGGCAAGATGTTACGTCCGCAGCAATGCGGGCTTGTAGAGATGCCATCACTTCCAATTCGATTCCTGCTTTTCGAAGAGGGTCAATACCTGGTGTTACATTTGAGGAGATGAAACTACAGATCAAGCTGGGAGTGCCTCATATACTACAACAGTCGCTCGATGTCGAGAAGGTCAAATCAGTCTTTCCATATGGAAAGATTTTGAATGTTGAAGTTGTTGATGGTGGACTGATATGCTCAAGTGGCGTGGTTGTAGAAGATATGGGAGATAAGAATGATGACTGTTATATAGTGAATGCAGCAGTTTATATTGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009743 GO:0009744 GO:0009888 GO:0009987 GO:0010019 GO:0010033 GO:0010073 GO:0010074 GO:0010492 GO:0016787 GO:0019538 GO:0019827 GO:0023052 GO:0030163 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048511 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070001 GO:0070011 GO:0071704 GO:0098727 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

194

Amino Acids

20.97

Weight (kDa)

6.82

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lin0512_fam	PF09585	77 - 191	1.1e-38	Conserved hypothetical protein (Lin0512_fam)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12700 AT3G12700 AT3G12700
fragaria_vesca	FvH4_3g13820 FvH4_5g37920
malus_domestica	MD05G1240800.v1.1 MD10G1219200.v1.1
prunus_persica	Prupe.4G124800_v2.0.a1
pyrus_communis	pycom05g21700 pycom10g18470
rosa_chinensis	RchiOBHm_Chr5g0023001 RchiOBHm_Chr7g0239861
rosa_laevigata	RLG00000000724 RLG00000032688
rosa_roxburghii	Rroxscaffold_1G00056340 Rroxscaffold_3G00220750
rosa_rugosa	Rorug05G0076400 Rorug07G0330600
rosa_samantha	Rh5AG162600 Rh5BG161800 Rh5CG176500 Rh5DG163200 Rh7AG484100 Rh7BG457200 Rh7CG501600 Rh7DG469800
rosa_wichuraiana	Rw5G014650 Rw7G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	165, 204, 282, 292
AgsI	TTSAA	2 cut(s)	469, 476
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	3 cut(s)	212, 226, 391
AluI	AGCT	3 cut(s)	212, 226, 391
Alw26I	GTCTC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	284, 563
AsuII	TTCGAA	2 cut(s)	133, 337
BbvI	GCAGC	2 cut(s)	296, 575
BccI	CCATC	3 cut(s)	235, 317, 479
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	583
BfmI	CTRYAG	1 cut(s)	380
BisI	GCNGC	4 cut(s)	165, 205, 285, 564
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	4 cut(s)	166, 206, 286, 565
Bme1390I	CCNGG	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	2 cut(s)	176, 295
Bpu1102I	GCTNAGC	1 cut(s)	208
Bpu14I	TTCGAA	2 cut(s)	133, 337
BpuEI	CTTGAG	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	296, 575
BseYI	CCCAGC	2 cut(s)	79, 391
BshFI	GGCC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	2 cut(s)	133, 337
Bsp143I	GATC	1 cut(s)	384
Bsp1720I	GCTNAGC	1 cut(s)	208
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	4 cut(s)	165, 204, 282, 292
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	221
BspT104I	TTCGAA	2 cut(s)	133, 337
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	417, 548
Bst6I	CTCTTC	2 cut(s)	135, 334
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBI	TTCGAA	2 cut(s)	133, 337
BstC8I	GCNNGC	2 cut(s)	10, 294
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 182, 293, 397, 507
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	296, 575
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	10, 294
CsiI	ACCWGGT	1 cut(s)	352
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	2 cut(s)	178, 263
CviJI	RGCY	9 cut(s)	8, 164, 185, 207, 212, 226, 252, 296, 391
CviKI_1	RGCY	9 cut(s)	8, 164, 185, 207, 212, 226, 252, 296, 391
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	135, 334
EarI	CTCTTC	2 cut(s)	135, 334
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	181, 266
FatI	CATG	2 cut(s)	177, 262
FauI	CCCGC	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	454
Fnu4HI	GCNGC	4 cut(s)	165, 205, 285, 564
Fsp4HI	GCNGC	4 cut(s)	165, 205, 285, 564
FspBI	CTAG	1 cut(s)	583
GluI	GCNGC	4 cut(s)	165, 205, 285, 564
GsaI	CCCAGC	2 cut(s)	83, 395
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	181, 266
HinfI	GANTC	2 cut(s)	144, 325
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	1 cut(s)	491
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	417, 548
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 182, 293, 397, 507
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	181, 266
Kzo9I	GATC	1 cut(s)	384
LpnPI	CCDG	8 cut(s)	22, 93, 200, 214, 339, 342, 366, 377
Lsp1109I	GCAGC	2 cut(s)	296, 575
LweI	GCATC	2 cut(s)	176, 295
MabI	ACCWGGT	1 cut(s)	352
MaeI	CTAG	1 cut(s)	583
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	3 cut(s)	274, 358, 578
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	5 cut(s)	27, 81, 122, 351, 533
MluCI	AATT	2 cut(s)	122, 319
MnlI	CCTC	6 cut(s)	49, 138, 150, 335, 361, 411
MspA1I	CMGCKG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	5 cut(s)	173, 182, 293, 397, 507
NcoI	CCATGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	2 cut(s)	181, 266
NspV	TTCGAA	2 cut(s)	133, 337
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	144, 325
PkrI	GCNGC	4 cut(s)	166, 206, 286, 565
Psp6I	CCWGG	1 cut(s)	352
PspFI	CCCAGC	2 cut(s)	79, 391
PspGI	CCWGG	1 cut(s)	352
SatI	GCNGC	4 cut(s)	165, 205, 285, 564
Sau3AI	GATC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	7 cut(s)	214, 220, 228, 281, 355, 393, 438
SexAI	ACCWGGT	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	176, 295
SfcI	CTRYAG	1 cut(s)	380
SfuI	TTCGAA	2 cut(s)	133, 337
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	2 cut(s)	122, 319
SsiI	CCGC	4 cut(s)	165, 204, 282, 292
SspMI	CTAG	1 cut(s)	583
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	417, 548
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	7 cut(s)	133, 142, 170, 323, 337, 423, 429
TasI	AATT	2 cut(s)	122, 319
TauI	GCSGC	2 cut(s)	167, 207
TfiI	GAWTC	2 cut(s)	144, 325
TseI	GCWGC	2 cut(s)	284, 563
TspDTI	ATGAA	2 cut(s)	236, 389
XspI	CTAG	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.