Rroxscaffold_3G00220750

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
3126237 .. 3127745
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220750.1

Sequence Viewer

Length: 1509 bp
ATGATGAAGGGGAGGATGTCAACTAGTTCAACAACATTCCTCTTCATCATTTTCTTGCTTTCTGCCACTCATCATGGATTTTTGCACGTTTGTGCAAATGGTGATCATACCACCATGCGGTTGCCGCTAATTCACAAGTACTCTCCTCATTTCAATGGAGGAGTTGGTTTGATCAACAAAACCGATATAGATATCATGAAAGAGCTTCACCAACATGACATAATCCGCCACCAAATGATTTTCCAAAGGAATAGAGATGATCATCCAATCCCAAGGCGAGAGGACTCAGAAACTAACTCATCCTTTGCAATGCCGGTGCATTCGGGTTTTGATATGCTGTCGGGGTTGTATTGGGTCGAAGTAAAAATTGGAACACCTCCCAAGACCTTCTTGTTGGCTGCAGATACAGGGAGTGACTTGACATGGGTCAAATGCAAATACGATAGAACGTTGACAAAGGAGGCCAAACAAAAAATGATAGACGATCGCAAGAAGAAGAAACACCATCATGGCGATCTCAAAAAGTCATTAATTTTTCTCAATAAAGGTAGGGAATTTCGTGCTGATCTATCATCGACATTCAAACCTGTTCCATGCTCCGATGGTATGTGCAGACAAGGGCTTGCACACATGATGTCTTATAAAGACTGCCCAACCCCAACGTCGCTTTGCAGATACACTTACAAGTACATGGGAGGGGAGGGAGCAAATGGTTTCTTTGGGTATGACACTATAACAGTACCCCTCGCAAATGGTAGCAAAACAAAGCTGCCTAATGTGACAATCGGCTGCACAGATTCCAACCAAAAGTTAAAGCAAGGTGATGGCATTCTAGGTTTAGGCTTCGGTGACTACTCATTCTCCGAGACAGTAGTTTCTTATAAGTTTGCTGGCAAGTTCTCTTACTGCCTAATGTTTCATAGGAGCAACTCGAGTGTGTTGAGTTATCTTACATTTGGTCCCAATAAACAAACTGTCAACAGCCCTATGAGGTACACAAAGTTGATTATGAGGAAGCAGAACGGAAGTAACTCTAATTTATATGGCGTAAACATAACGGGCATCTCAATCGGGGGCACATTATTGAAGATACCAAGTCAATTTTGGGATGCAACATCGCGTAATGGTGGTGTAGTGCTTGATTCAGGCTCAACCAACACATTTCTATCCCTACCAGCTTACAAGGCTGTCATGGACGAATTGACAGATGCTTTGTCAAAATATAATAGTTTCGTGCTCAAAGAGCTCCCATTTGAATTCTGCTTCAATGATAAAGGATATGACGAGTCTTCGGTGCCAAGACTTGCATTTCATTTTGCAGATGGTGTTCGATATGAGCCACCGGTGAGAAACTATGTTGTACCTGTGACAACGGGGATCAAGTGTATTGGCTTTGTTCCATCTCCCGATGGCAAGTCTGTGATTGGCAACCAAATGCAGCAAAACCATATTTGGGAATTTGATATTTCACGTGGTACTGTGGGTTTTGCTCCTTCCGGCTGCACCTAG

Protein Analysis

502

Amino Acids

56.07

Weight (kDa)

9.13

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 117 - 320 1.3e-37 Xylanase inhibitor N-terminal
Asp PF00026 117 - 498 4e-17 Eukaryotic aspartyl protease
TAXi_C PF14541 348 - 497 4.8e-32 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 642, 882
AccB1I GGYRCC 1 cut(s) 1294
AccII CGCG 1 cut(s) 1120
AciI CCGC 3 cut(s) 118, 125, 226
AclI AACGTT 1 cut(s) 449
AclWI GGATC 1 cut(s) 1385
AcsI RAATTY 3 cut(s) 554, 1256, 1457
AcvI CACGTG 1 cut(s) 1472
AfaI GTAC 6 cut(s) 140, 689, 741, 995, 1362, 1477
AfiI CCNNNNNNNGG 2 cut(s) 117, 1453
AgeI ACCGGT 1 cut(s) 1342
AgsI TTSAA 6 cut(s) 30, 154, 583, 1087, 1256, 1267
AhlI ACTAGT 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AleI CACNNNNGTG 1 cut(s) 90
AluBI AGCT 4 cut(s) 205, 769, 1178, 1246
AluI AGCT 4 cut(s) 205, 769, 1178, 1246
Alw21I GWGCWC 2 cut(s) 1239, 1248
Alw26I GTCTC 1 cut(s) 860
AlwI GGATC 1 cut(s) 1385
Ama87I CYCGRG 1 cut(s) 931
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 5 cut(s) 398, 769, 789, 1438, 1500
ApoI RAATTY 3 cut(s) 554, 1256, 1457
ArsI GACNNNNNNTTYG 2 cut(s) 1195, 1227
AseI ATTAAT 1 cut(s) 530
AsiGI ACCGGT 1 cut(s) 1342
AspS9I GGNCC 1 cut(s) 959
AsuHPI GGTGA 5 cut(s) 113, 200, 833, 860, 1357
AvaI CYCGRG 1 cut(s) 931
AvaII GGWCC 1 cut(s) 959
BaeGI GKGCMC 1 cut(s) 1079
BanI GGYRCC 1 cut(s) 1294
BanII GRGCYC 1 cut(s) 1248
BbrPI CACGTG 1 cut(s) 1472
BbsI GAAGAC 1 cut(s) 1281
Bbv12I GWGCWC 2 cut(s) 1239, 1248
BbvI GCAGC 5 cut(s) 385, 756, 776, 1450, 1487
BccI CCATC 6 cut(s) 513, 596, 818, 1316, 1403, 1408
BcgI CGANNNNNNTGC 2 cut(s) 1051, 1085
BclI TGATCA 3 cut(s) 103, 171, 259
BcoDI GTCTC 1 cut(s) 860
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 3 cut(s) 24, 833, 1507
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 6 cut(s) 125, 399, 770, 790, 1439, 1501
BlsI GCNGC 6 cut(s) 126, 400, 771, 791, 1440, 1502
BmcAI AGTACT 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 959
BmeT110I CYCGRG 1 cut(s) 931
BmgT120I GGNCC 1 cut(s) 959
BmiI GGNNCC 2 cut(s) 961, 1296
BmsI GCATC 3 cut(s) 1071, 1099, 1198
BoxI GACNNNNGTC 1 cut(s) 425
BpiI GAAGAC 1 cut(s) 1281
BsaAI YACGTR 1 cut(s) 1472
BsaBI GATNNNNATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 1342
BsaXI ACNNNNNCTCC 2 cut(s) 845, 875
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 1453
Bse118I RCCGGY 2 cut(s) 313, 1342
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 4 cut(s) 21, 262, 299, 1114
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 117, 1453
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 2 cut(s) 135, 174
BseSI GKGCMC 1 cut(s) 1079
BseXI GCAGC 5 cut(s) 385, 756, 776, 1450, 1487
BsgI GTGCAG 3 cut(s) 631, 775, 1486
Bsh1236I CGCG 1 cut(s) 1120
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 1 cut(s) 464
BshNI GGYRCC 1 cut(s) 1294
BshTI ACCGGT 1 cut(s) 1342
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 2 cut(s) 1239, 1248
BsiHKCI CYCGRG 1 cut(s) 931
BsiSI CCGG 3 cut(s) 314, 1343, 1497
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 2 cut(s) 117, 1453
BsmAI GTCTC 1 cut(s) 860
BsmFI GGGAC 1 cut(s) 945
BsmI GAATGC 2 cut(s) 319, 828
BsnI GGCC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 931
Bsp1286I GDGCHC 3 cut(s) 1079, 1239, 1248
Bsp143I GATC 7 cut(s) 103, 171, 259, 484, 514, 565, 1377
BspACI CCGC 3 cut(s) 118, 125, 226
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 1 cut(s) 299
BspFNI CGCG 1 cut(s) 1120
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 961, 1296
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 1385
BspT107I GGYRCC 1 cut(s) 1294
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 2 cut(s) 313, 1342
BssAI RCCGGY 2 cut(s) 313, 1342
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 7 cut(s) 103, 171, 259, 484, 514, 565, 1377
BssT1I CCWWGG 1 cut(s) 272
Bst4CI ACNGT 4 cut(s) 739, 871, 976, 1480
Bst6I CTCTTC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 1472
BstC8I GCNNGC 2 cut(s) 624, 892
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 4 cut(s) 21, 262, 299, 1114
BstFNI CGCG 1 cut(s) 1120
BstKTI GATC 7 cut(s) 106, 174, 262, 487, 517, 568, 1380
BstMAI GTCTC 1 cut(s) 860
BstMBI GATC 7 cut(s) 103, 171, 259, 484, 514, 565, 1377
BstMCI CGRYCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 3 cut(s) 124, 1184, 1243
BstPAI GACNNNNGTC 1 cut(s) 425
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 1079
BstUI CGCG 1 cut(s) 1120
BstV1I GCAGC 5 cut(s) 385, 756, 776, 1450, 1487
BstV2I GAAGAC 1 cut(s) 1281
BsuRI GGCC 1 cut(s) 464
BtgZI GCGATG 1 cut(s) 1101
BtsCI GGATG 4 cut(s) 21, 262, 299, 1114
Cac8I GCNNGC 2 cut(s) 624, 892
CciI TCATGA 1 cut(s) 195
Cfr10I RCCGGY 2 cut(s) 313, 1342
Cfr13I GGNCC 1 cut(s) 959
Csp6I GTAC 6 cut(s) 139, 688, 740, 994, 1361, 1476
CspAI ACCGGT 1 cut(s) 1342
CviQI GTAC 6 cut(s) 139, 688, 740, 994, 1361, 1476
DdeI CTNAG 1 cut(s) 286
DpnI GATC 7 cut(s) 105, 173, 261, 486, 516, 567, 1379
DpnII GATC 7 cut(s) 103, 171, 259, 484, 514, 565, 1377
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 1246
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 1248
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 959
Eco53kI GAGCTC 1 cut(s) 1246
Eco72I CACGTG 1 cut(s) 1472
Eco88I CYCGRG 1 cut(s) 931
EcoICRI GAGCTC 1 cut(s) 1246
EcoRI GAATTC 1 cut(s) 1256
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 1248
ErhI CCWWGG 1 cut(s) 272
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 945
FbaI TGATCA 3 cut(s) 103, 171, 259
Fnu4HI GCNGC 6 cut(s) 125, 399, 770, 790, 1439, 1501
FokI GGATG 4 cut(s) 28, 249, 286, 1121
FriOI GRGCYC 1 cut(s) 1248
Fsp4HI GCNGC 6 cut(s) 125, 399, 770, 790, 1439, 1501
FspBI CTAG 3 cut(s) 24, 833, 1507
GluI GCNGC 6 cut(s) 125, 399, 770, 790, 1439, 1501
HaeIII GGCC 1 cut(s) 464
HapII CCGG 3 cut(s) 314, 1343, 1497
HincII GTYRAC 3 cut(s) 21, 453, 979
HindII GTYRAC 3 cut(s) 21, 453, 979
HinfI GANTC 4 cut(s) 284, 797, 1142, 1286
HpaII CCGG 3 cut(s) 314, 1343, 1497
HphI GGTGA 5 cut(s) 113, 200, 833, 860, 1357
Hpy166II GTNNAC 5 cut(s) 21, 453, 979, 996, 1051
Hpy188I TCNGA 3 cut(s) 289, 601, 865
Hpy188III TCNNGA 2 cut(s) 196, 1406
Hpy8I GTNNAC 5 cut(s) 21, 453, 979, 996, 1051
Hpy99I CGWCG 1 cut(s) 667
HpyAV CCTTC 2 cut(s) 397, 1503
HpyCH4III ACNGT 4 cut(s) 739, 871, 976, 1480
HpyCH4IV ACGT 4 cut(s) 87, 449, 662, 1471
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 1184, 1243
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 4 cut(s) 87, 449, 662, 1471
Ksp22I TGATCA 3 cut(s) 103, 171, 259
Kzo9I GATC 7 cut(s) 103, 171, 259, 484, 514, 565, 1377
LmnI GCTCC 5 cut(s) 602, 704, 924, 1251, 1495
LpnPI CCDG 8 cut(s) 327, 393, 600, 876, 1131, 1188, 1356, 1377
Lsp1109I GCAGC 5 cut(s) 385, 756, 776, 1450, 1487
LweI GCATC 3 cut(s) 1071, 1099, 1198
MaeI CTAG 3 cut(s) 24, 833, 1507
MaeII ACGT 4 cut(s) 87, 449, 662, 1471
MaeIII GTNAC 5 cut(s) 413, 778, 848, 1028, 1366
MalI GATC 7 cut(s) 105, 173, 261, 486, 516, 567, 1379
MboI GATC 7 cut(s) 103, 171, 259, 484, 514, 565, 1377
MboII GAAGA 5 cut(s) 34, 505, 508, 1099, 1281
MhlI GDGCHC 3 cut(s) 1079, 1239, 1248
MluCI AATT 9 cut(s) 129, 366, 531, 554, 1036, 1100, 1199, 1256, 1457
MlyI GAGTC 2 cut(s) 278, 1295
MmeI TCCRAC 1 cut(s) 825
MseI TTAA 2 cut(s) 530, 812
MslI CAYNNNNRTG 4 cut(s) 90, 153, 213, 507
MspI CCGG 3 cut(s) 314, 1343, 1497
Mva1269I GAATGC 2 cut(s) 319, 828
MvnI CGCG 1 cut(s) 1120
MwoI GCNNNNNNNGC 3 cut(s) 124, 1184, 1243
NdeII GATC 7 cut(s) 103, 171, 259, 484, 514, 565, 1377
NlaIV GGNNCC 2 cut(s) 961, 1296
NmuCI GTSAC 4 cut(s) 413, 778, 848, 1366
OliI CACNNNNGTG 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 931
PagI TCATGA 1 cut(s) 195
PctI GAATGC 2 cut(s) 319, 828
PfeI GAWTC 2 cut(s) 797, 1142
PinAI ACCGGT 1 cut(s) 1342
PkrI GCNGC 6 cut(s) 126, 400, 771, 791, 1440, 1502
Ple19I CGATCG 1 cut(s) 487
PleI GAGTC 2 cut(s) 278, 1294
PmaCI CACGTG 1 cut(s) 1472
PmlI CACGTG 1 cut(s) 1472
PpsI GAGTC 2 cut(s) 278, 1294
Ppu21I YACGTR 1 cut(s) 1472
PshAI GACNNNNGTC 1 cut(s) 425
PshBI ATTAAT 1 cut(s) 530
PsiI TTATAA 2 cut(s) 642, 882
Psp124BI GAGCTC 1 cut(s) 1248
Psp1406I AACGTT 1 cut(s) 449
PspCI CACGTG 1 cut(s) 1472
PspN4I GGNNCC 2 cut(s) 961, 1296
PspPI GGNCC 1 cut(s) 959
PspXI VCTCGAGB 1 cut(s) 931
PstI CTGCAG 1 cut(s) 403
PvuI CGATCG 1 cut(s) 487
RsaI GTAC 6 cut(s) 140, 689, 741, 995, 1362, 1477
RsaNI GTAC 6 cut(s) 139, 688, 740, 994, 1361, 1476
RseI CAYNNNNRTG 4 cut(s) 90, 153, 213, 507
SacI GAGCTC 1 cut(s) 1248
SaqAI TTAA 2 cut(s) 530, 812
SatI GCNGC 6 cut(s) 125, 399, 770, 790, 1439, 1501
Sau3AI GATC 7 cut(s) 103, 171, 259, 484, 514, 565, 1377
Sau96I GGNCC 1 cut(s) 959
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 2 cut(s) 278, 1295
SduI GDGCHC 3 cut(s) 1079, 1239, 1248
SfaNI GCATC 3 cut(s) 1071, 1099, 1198
SfcI CTRYAG 1 cut(s) 399
Sfr274I CTCGAG 1 cut(s) 931
SgrAI CRCCGGYG 1 cut(s) 1342
SinI GGWCC 1 cut(s) 959
SlaI CTCGAG 1 cut(s) 931
SmiMI CAYNNNNRTG 4 cut(s) 90, 153, 213, 507
SmlI CTYRAG 1 cut(s) 931
SmoI CTYRAG 1 cut(s) 931
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 9 cut(s) 129, 366, 531, 554, 1036, 1100, 1199, 1256, 1457
SsiI CCGC 3 cut(s) 118, 125, 226
SspMI CTAG 3 cut(s) 24, 833, 1507
SstI GAGCTC 1 cut(s) 1248
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 4 cut(s) 739, 871, 976, 1480
TaiI ACGT 4 cut(s) 90, 452, 665, 1474
TaqI TCGA 4 cut(s) 357, 575, 932, 1330
TasI AATT 9 cut(s) 129, 366, 531, 554, 1036, 1100, 1199, 1256, 1457
TatI WGTACW 2 cut(s) 138, 687
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 2 cut(s) 797, 1142
Tru1I TTAA 2 cut(s) 530, 812
Tru9I TTAA 2 cut(s) 530, 812
TseFI GTSAC 4 cut(s) 413, 778, 848, 1366
TseI GCWGC 5 cut(s) 398, 769, 789, 1438, 1500
Tsp45I GTSAC 4 cut(s) 413, 778, 848, 1366
TspDTI ATGAA 5 cut(s) 20, 34, 212, 908, 1301
TspGWI ACGGA 1 cut(s) 1038
VpaK11BI GGWCC 1 cut(s) 959
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 3 cut(s) 554, 1256, 1457
XcmI CCANNNNNNNNNTGG 1 cut(s) 1101
XhoI CTCGAG 1 cut(s) 931
XspI CTAG 3 cut(s) 24, 833, 1507
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.